Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 U6atac.2-201ENST00000408644 118 ntBASIC1.29□□□□□ -2.2
FOXA3P55318 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.29□□□□□ -2.2
FOXA3P55318 ZNF863P-201ENST00000426746 417 ntBASIC1.29□□□□□ -2.2
FOXA3P55318 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC1.29□□□□□ -2.2
FOXA3P55318 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC1.29□□□□□ -2.2
FOXA3P55318 RPL30P4-201ENST00000429309 333 ntBASIC1.29□□□□□ -2.2
FOXA3P55318 Z98742.2-201ENST00000431564 187 ntBASIC1.29□□□□□ -2.2
FOXA3P55318 HSPE1P21-201ENST00000438283 308 ntBASIC1.29□□□□□ -2.2
FOXA3P55318 RPL12P25-201ENST00000455592 494 ntBASIC1.29□□□□□ -2.2
FOXA3P55318 RPL26P9-201ENST00000457466 433 ntBASIC1.29□□□□□ -2.2
FOXA3P55318 AC027575.1-201ENST00000481064 460 ntBASIC1.29□□□□□ -2.2
FOXA3P55318 AC079203.1-201ENST00000487972 404 ntBASIC1.29□□□□□ -2.2
FOXA3P55318 AL049874.1-201ENST00000489560 388 ntBASIC1.29□□□□□ -2.2
FOXA3P55318 AC055855.1-201ENST00000489563 579 ntBASIC1.29□□□□□ -2.2
FOXA3P55318 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC1.29□□□□□ -2.2
FOXA3P55318 RPL9P6-201ENST00000492764 598 ntBASIC1.29□□□□□ -2.2
FOXA3P55318 AC106872.3-201ENST00000495104 446 ntBASIC1.29□□□□□ -2.2
FOXA3P55318 RPS29P11-201ENST00000496507 171 ntBASIC1.29□□□□□ -2.2
FOXA3P55318 AC104685.1-201ENST00000502445 371 ntBASIC1.29□□□□□ -2.2
FOXA3P55318 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC1.29□□□□□ -2.2
FOXA3P55318 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC1.29□□□□□ -2.2
FOXA3P55318 AF213884.2-201ENST00000510417 903 ntBASIC1.29□□□□□ -2.2
FOXA3P55318 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC1.29□□□□□ -2.2
FOXA3P55318 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC1.29□□□□□ -2.2
FOXA3P55318 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC1.29□□□□□ -2.2
FOXA3P55318 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.29□□□□□ -2.2
FOXA3P55318 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC1.29□□□□□ -2.2
FOXA3P55318 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC1.29□□□□□ -2.2
FOXA3P55318 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC1.29□□□□□ -2.2
FOXA3P55318 MIR3126-201ENST00000577443 74 ntBASIC1.29□□□□□ -2.2
FOXA3P55318 OR4K8P-201ENST00000578842 1048 ntBASIC1.29□□□□□ -2.2
FOXA3P55318 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.29□□□□□ -2.2
FOXA3P55318 DUXAP10-204ENST00000612052 616 ntBASIC1.29□□□□□ -2.2
FOXA3P55318 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC1.29□□□□□ -2.2
FOXA3P55318 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC1.29□□□□□ -2.2
FOXA3P55318 AC073569.3-201ENST00000619055 682 ntBASIC1.29□□□□□ -2.2
FOXA3P55318 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC1.29□□□□□ -2.2
FOXA3P55318 AC005832.2-201ENST00000538921 1430 ntBASIC1.29□□□□□ -2.2
FOXA3P55318 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC1.28□□□□□ -2.2
FOXA3P55318 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC1.28□□□□□ -2.2
FOXA3P55318 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC1.28□□□□□ -2.2
FOXA3P55318 WWP1P1-201ENST00000466609 2769 ntBASIC1.28□□□□□ -2.2
FOXA3P55318 MIR888-201ENST00000401186 77 ntBASIC1.28□□□□□ -2.2
FOXA3P55318 RPA3-203ENST00000401447 414 ntTSL 3 BASIC1.28□□□□□ -2.2
FOXA3P55318 POLHP1-201ENST00000411806 470 ntBASIC1.28□□□□□ -2.2
FOXA3P55318 VN1R36P-201ENST00000414936 291 ntBASIC1.28□□□□□ -2.2
FOXA3P55318 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC1.28□□□□□ -2.2
FOXA3P55318 AC244636.1-201ENST00000421152 228 ntBASIC1.28□□□□□ -2.2
FOXA3P55318 AL353729.1-201ENST00000425044 720 ntBASIC1.28□□□□□ -2.2
FOXA3P55318 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC1.28□□□□□ -2.2
FOXA3P55318 SNORD121B-201ENST00000458838 81 ntBASIC1.28□□□□□ -2.2
FOXA3P55318 HMGB1P36-201ENST00000487709 576 ntBASIC1.28□□□□□ -2.2
FOXA3P55318 AC140059.1-201ENST00000489238 361 ntBASIC1.28□□□□□ -2.2
FOXA3P55318 MTCO3P42-201ENST00000509488 518 ntBASIC1.28□□□□□ -2.2
FOXA3P55318 MTCO3P39-201ENST00000514812 518 ntBASIC1.28□□□□□ -2.2
FOXA3P55318 RNU6-416P-201ENST00000516265 103 ntBASIC1.28□□□□□ -2.2
FOXA3P55318 RNA5SP137-201ENST00000516833 135 ntBASIC1.28□□□□□ -2.2
FOXA3P55318 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC1.28□□□□□ -2.2
FOXA3P55318 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC1.28□□□□□ -2.2
FOXA3P55318 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC1.28□□□□□ -2.2
FOXA3P55318 AC011131.1-201ENST00000521224 252 ntTSL 2 BASIC1.28□□□□□ -2.2
FOXA3P55318 LINC02316-201ENST00000553346 768 ntTSL 3 BASIC1.28□□□□□ -2.2
FOXA3P55318 AL049835.1-201ENST00000555850 514 ntTSL 3 BASIC1.28□□□□□ -2.2
FOXA3P55318 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC1.28□□□□□ -2.2
FOXA3P55318 MTCYBP23-201ENST00000558717 1102 ntBASIC1.28□□□□□ -2.2
FOXA3P55318 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC1.28□□□□□ -2.2
FOXA3P55318 AC124283.4-201ENST00000581815 456 ntBASIC1.28□□□□□ -2.2
FOXA3P55318 AP001269.3-201ENST00000588718 329 ntBASIC1.28□□□□□ -2.2
FOXA3P55318 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC1.28□□□□□ -2.2
FOXA3P55318 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC1.28□□□□□ -2.2
FOXA3P55318 AP000403.1-201ENST00000603349 851 ntBASIC1.28□□□□□ -2.2
FOXA3P55318 RPAP2P1-201ENST00000603626 1168 ntBASIC1.28□□□□□ -2.2
FOXA3P55318 AC126118.1-201ENST00000607744 628 ntBASIC1.28□□□□□ -2.2
FOXA3P55318 AL773524.1-201ENST00000614065 229 ntBASIC1.28□□□□□ -2.2
FOXA3P55318 MKKS-204ENST00000639674 192 ntBASIC1.28□□□□□ -2.2
FOXA3P55318 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC1.28□□□□□ -2.2
FOXA3P55318 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.27□□□□□ -2.21
FOXA3P55318 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
FOXA3P55318 U8.3-201ENST00000363321 132 ntBASIC1.27□□□□□ -2.21
FOXA3P55318 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC1.27□□□□□ -2.21
FOXA3P55318 MIR1294-201ENST00000408503 142 ntBASIC1.27□□□□□ -2.21
FOXA3P55318 AC008173.1-201ENST00000418901 264 ntBASIC1.27□□□□□ -2.21
FOXA3P55318 MED14P1-201ENST00000430517 648 ntBASIC1.27□□□□□ -2.21
FOXA3P55318 AL645568.3-201ENST00000433683 316 ntBASIC1.27□□□□□ -2.21
FOXA3P55318 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC1.27□□□□□ -2.21
FOXA3P55318 GTF2IP7-202ENST00000436677 309 ntBASIC1.27□□□□□ -2.21
FOXA3P55318 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC1.27□□□□□ -2.21
FOXA3P55318 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC1.27□□□□□ -2.21
FOXA3P55318 AL929288.2-201ENST00000446368 407 ntBASIC1.27□□□□□ -2.21
FOXA3P55318 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC1.27□□□□□ -2.21
FOXA3P55318 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC1.27□□□□□ -2.21
FOXA3P55318 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
FOXA3P55318 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
FOXA3P55318 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC1.27□□□□□ -2.21
FOXA3P55318 RNU6-970P-201ENST00000516312 107 ntBASIC1.27□□□□□ -2.21
FOXA3P55318 SNORA31.22-201ENST00000517204 135 ntBASIC1.27□□□□□ -2.21
FOXA3P55318 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC1.27□□□□□ -2.21
FOXA3P55318 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
FOXA3P55318 AL356804.1-201ENST00000553791 448 ntTSL 5 BASIC1.27□□□□□ -2.21
FOXA3P55318 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC1.27□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 113.6 ms