Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 Y_RNA.394-201ENST00000383942 103 ntBASIC3.2□□□□□ -1.9
HOXD3P31249 PTMAP2-201ENST00000397627 327 ntBASIC3.2□□□□□ -1.9
HOXD3P31249 RNA5SP111-201ENST00000411386 101 ntBASIC3.2□□□□□ -1.9
HOXD3P31249 NAP1L1P2-201ENST00000414182 1089 ntBASIC3.2□□□□□ -1.9
HOXD3P31249 RAC1P3-201ENST00000416129 580 ntBASIC3.2□□□□□ -1.9
HOXD3P31249 AC016831.2-201ENST00000417179 352 ntBASIC3.2□□□□□ -1.9
HOXD3P31249 AL451054.2-201ENST00000420896 202 ntBASIC3.2□□□□□ -1.9
HOXD3P31249 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC3.2□□□□□ -1.9
HOXD3P31249 AC006946.1-201ENST00000429106 328 ntBASIC3.2□□□□□ -1.9
HOXD3P31249 HMGB1P18-201ENST00000438801 619 ntBASIC3.2□□□□□ -1.9
HOXD3P31249 AL121871.1-201ENST00000443413 436 ntBASIC3.2□□□□□ -1.9
HOXD3P31249 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC3.2□□□□□ -1.9
HOXD3P31249 AC233279.1-201ENST00000455300 423 ntBASIC3.2□□□□□ -1.9
HOXD3P31249 RNU7-66P-201ENST00000459469 62 ntBASIC3.2□□□□□ -1.9
HOXD3P31249 RNU6-1208P-201ENST00000459588 107 ntBASIC3.2□□□□□ -1.9
HOXD3P31249 AC004801.2-202ENST00000463559 283 ntBASIC3.2□□□□□ -1.9
HOXD3P31249 MTND4P17-201ENST00000470444 350 ntBASIC3.2□□□□□ -1.9
HOXD3P31249 AC010285.1-201ENST00000470580 392 ntBASIC3.2□□□□□ -1.9
HOXD3P31249 RPL23AP11-201ENST00000475260 469 ntBASIC3.2□□□□□ -1.9
HOXD3P31249 RPL31P13-201ENST00000484151 370 ntBASIC3.2□□□□□ -1.9
HOXD3P31249 AC110792.1-201ENST00000491826 472 ntBASIC3.2□□□□□ -1.9
HOXD3P31249 AC106872.2-201ENST00000494303 480 ntBASIC3.2□□□□□ -1.9
HOXD3P31249 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC3.2□□□□□ -1.9
HOXD3P31249 GMPSP1-201ENST00000514075 579 ntBASIC3.2□□□□□ -1.9
HOXD3P31249 RN7SKP60-201ENST00000516985 239 ntBASIC3.2□□□□□ -1.9
HOXD3P31249 RNU6-685P-201ENST00000517088 95 ntBASIC3.2□□□□□ -1.9
HOXD3P31249 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC3.2□□□□□ -1.9
HOXD3P31249 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC3.2□□□□□ -1.9
HOXD3P31249 AP001804.3-201ENST00000525146 880 ntBASIC3.2□□□□□ -1.9
HOXD3P31249 CBX3P7-201ENST00000532876 502 ntBASIC3.2□□□□□ -1.9
HOXD3P31249 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC3.2□□□□□ -1.9
HOXD3P31249 NACA-211ENST00000548563 827 ntTSL 5 BASIC3.2□□□□□ -1.9
HOXD3P31249 MIR3942-201ENST00000585264 109 ntBASIC3.2□□□□□ -1.9
HOXD3P31249 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC3.2□□□□□ -1.9
HOXD3P31249 AC005498.1-201ENST00000592125 465 ntBASIC3.2□□□□□ -1.9
HOXD3P31249 BNIP3P25-201ENST00000596023 559 ntBASIC3.2□□□□□ -1.9
HOXD3P31249 AL606490.9-201ENST00000603331 271 ntBASIC3.2□□□□□ -1.9
HOXD3P31249 AC103710.3-201ENST00000608157 948 ntBASIC3.2□□□□□ -1.9
HOXD3P31249 Z82243.1-201ENST00000609432 473 ntBASIC3.2□□□□□ -1.9
HOXD3P31249 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC3.2□□□□□ -1.9
HOXD3P31249 AL442067.2-201ENST00000614033 363 ntBASIC3.2□□□□□ -1.9
HOXD3P31249 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC3.2□□□□□ -1.9
HOXD3P31249 uc_338.11-201ENST00000619132 160 ntBASIC3.2□□□□□ -1.9
HOXD3P31249 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC3.2□□□□□ -1.9
HOXD3P31249 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC3.2□□□□□ -1.9
HOXD3P31249 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC3.2□□□□□ -1.9
HOXD3P31249 MIR1302-1-201ENST00000637932 143 ntBASIC3.2□□□□□ -1.9
HOXD3P31249 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC3.2□□□□□ -1.9
HOXD3P31249 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC3.2□□□□□ -1.9
HOXD3P31249 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
HOXD3P31249 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
HOXD3P31249 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.2□□□□□ -1.9
HOXD3P31249 LINC02471-203ENST00000641941 4752 ntBASIC3.2□□□□□ -1.9
HOXD3P31249 AC066616.2-201ENST00000559334 1481 ntBASIC3.2□□□□□ -1.9
HOXD3P31249 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
HOXD3P31249 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
HOXD3P31249 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.2□□□□□ -1.9
HOXD3P31249 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
HOXD3P31249 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.19□□□□□ -1.9
HOXD3P31249 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
HOXD3P31249 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC3.19□□□□□ -1.9
HOXD3P31249 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
HOXD3P31249 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
HOXD3P31249 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
HOXD3P31249 Y_RNA.301-201ENST00000364990 103 ntBASIC3.19□□□□□ -1.9
HOXD3P31249 Y_RNA.474-201ENST00000384341 102 ntBASIC3.19□□□□□ -1.9
HOXD3P31249 RNU6-1127P-201ENST00000384580 107 ntBASIC3.19□□□□□ -1.9
HOXD3P31249 CISD1P1-201ENST00000393907 327 ntBASIC3.19□□□□□ -1.9
HOXD3P31249 RNU6ATAC-201ENST00000408749 126 ntBASIC3.19□□□□□ -1.9
HOXD3P31249 MIR1183-201ENST00000408856 89 ntBASIC3.19□□□□□ -1.9
HOXD3P31249 RNU4-6P-201ENST00000410804 122 ntBASIC3.19□□□□□ -1.9
HOXD3P31249 RN7SKP140-201ENST00000411196 284 ntBASIC3.19□□□□□ -1.9
HOXD3P31249 HSPE1P1-201ENST00000421494 318 ntBASIC3.19□□□□□ -1.9
HOXD3P31249 GOT2P5-201ENST00000433995 546 ntBASIC3.19□□□□□ -1.9
HOXD3P31249 RPL23AP89-201ENST00000439324 255 ntBASIC3.19□□□□□ -1.9
HOXD3P31249 AL358232.1-201ENST00000448030 501 ntBASIC3.19□□□□□ -1.9
HOXD3P31249 RPS15AP27-201ENST00000449183 343 ntBASIC3.19□□□□□ -1.9
HOXD3P31249 snoU13.24-201ENST00000458998 104 ntBASIC3.19□□□□□ -1.9
HOXD3P31249 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC3.19□□□□□ -1.9
HOXD3P31249 VN1R104P-201ENST00000505115 1009 ntBASIC3.19□□□□□ -1.9
HOXD3P31249 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC3.19□□□□□ -1.9
HOXD3P31249 MLLT10P2-201ENST00000506434 249 ntBASIC3.19□□□□□ -1.9
HOXD3P31249 IL7R-208ENST00000511982 612 ntTSL 2 BASIC3.19□□□□□ -1.9
HOXD3P31249 RNU6-1088P-201ENST00000516850 104 ntBASIC3.19□□□□□ -1.9
HOXD3P31249 RNU6-273P-201ENST00000516937 96 ntBASIC3.19□□□□□ -1.9
HOXD3P31249 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC3.19□□□□□ -1.9
HOXD3P31249 RANP3-201ENST00000530970 276 ntBASIC3.19□□□□□ -1.9
HOXD3P31249 AC063950.1-201ENST00000552036 308 ntBASIC3.19□□□□□ -1.9
HOXD3P31249 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC3.19□□□□□ -1.9
HOXD3P31249 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC3.19□□□□□ -1.9
HOXD3P31249 AC005668.1-201ENST00000571142 476 ntBASIC3.19□□□□□ -1.9
HOXD3P31249 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC3.19□□□□□ -1.9
HOXD3P31249 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC3.19□□□□□ -1.9
HOXD3P31249 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC3.19□□□□□ -1.9
HOXD3P31249 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC3.19□□□□□ -1.9
HOXD3P31249 AC024220.1-201ENST00000603675 484 ntBASIC3.19□□□□□ -1.9
HOXD3P31249 AC104763.2-201ENST00000604179 382 ntBASIC3.19□□□□□ -1.9
HOXD3P31249 AL050343.2-201ENST00000607338 280 ntBASIC3.19□□□□□ -1.9
HOXD3P31249 uc_338.5-201ENST00000611839 155 ntBASIC3.19□□□□□ -1.9
HOXD3P31249 AL365204.3-201ENST00000612448 685 ntBASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 149.4 ms