Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3.39□□□□□ -1.87
BDNFP23560 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
BDNFP23560 UBE2Q2P2-203ENST00000613592 761 ntBASIC3.39□□□□□ -1.87
BDNFP23560 AC009159.1-201ENST00000618386 642 ntBASIC3.39□□□□□ -1.87
BDNFP23560 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC3.39□□□□□ -1.87
BDNFP23560 U2.21-201ENST00000637295 81 ntBASIC3.39□□□□□ -1.87
BDNFP23560 AC006927.3-201ENST00000638789 384 ntBASIC3.39□□□□□ -1.87
BDNFP23560 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC3.39□□□□□ -1.87
BDNFP23560 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
BDNFP23560 AC010889.1-201ENST00000566193 2666 ntBASIC3.38□□□□□ -1.87
BDNFP23560 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.38□□□□□ -1.87
BDNFP23560 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.38□□□□□ -1.87
BDNFP23560 ADAM3A-203ENST00000461344 2157 ntBASIC3.38□□□□□ -1.87
BDNFP23560 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC3.38□□□□□ -1.87
BDNFP23560 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
BDNFP23560 RNU6-501P-201ENST00000364072 100 ntBASIC3.38□□□□□ -1.87
BDNFP23560 RNU6-461P-201ENST00000364195 107 ntBASIC3.38□□□□□ -1.87
BDNFP23560 RNY3P13-201ENST00000365542 102 ntBASIC3.38□□□□□ -1.87
BDNFP23560 RNU1-109P-201ENST00000383960 147 ntBASIC3.38□□□□□ -1.87
BDNFP23560 SNORA48.2-201ENST00000390926 124 ntBASIC3.38□□□□□ -1.87
BDNFP23560 U3.26-201ENST00000391236 204 ntBASIC3.38□□□□□ -1.87
BDNFP23560 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC3.38□□□□□ -1.87
BDNFP23560 AC009969.1-201ENST00000438726 172 ntBASIC3.38□□□□□ -1.87
BDNFP23560 AL671855.1-201ENST00000446875 1203 ntBASIC3.38□□□□□ -1.87
BDNFP23560 DPPA3P1-201ENST00000448050 469 ntBASIC3.38□□□□□ -1.87
BDNFP23560 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC3.38□□□□□ -1.87
BDNFP23560 RBM43P1-201ENST00000476891 1081 ntBASIC3.38□□□□□ -1.87
BDNFP23560 RPS3AP43-201ENST00000479743 781 ntBASIC3.38□□□□□ -1.87
BDNFP23560 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC3.38□□□□□ -1.87
BDNFP23560 OR2A20P-203ENST00000498397 1268 ntBASIC3.38□□□□□ -1.87
BDNFP23560 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.38□□□□□ -1.87
BDNFP23560 RNU2-10P-201ENST00000516375 211 ntBASIC3.38□□□□□ -1.87
BDNFP23560 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC3.38□□□□□ -1.87
BDNFP23560 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC3.38□□□□□ -1.87
BDNFP23560 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC3.38□□□□□ -1.87
BDNFP23560 BNIP3P9-201ENST00000603714 553 ntBASIC3.38□□□□□ -1.87
BDNFP23560 AC100793.4-201ENST00000613683 429 ntBASIC3.38□□□□□ -1.87
BDNFP23560 AC138932.5-201ENST00000617759 563 ntBASIC3.38□□□□□ -1.87
BDNFP23560 AC018692.3-201ENST00000623929 123 ntBASIC3.38□□□□□ -1.87
BDNFP23560 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC3.38□□□□□ -1.87
BDNFP23560 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC3.38□□□□□ -1.87
BDNFP23560 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
BDNFP23560 AC135776.4-201ENST00000624300 1904 ntBASIC3.38□□□□□ -1.87
BDNFP23560 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.38□□□□□ -1.87
BDNFP23560 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
BDNFP23560 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
BDNFP23560 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.37□□□□□ -1.87
BDNFP23560 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
BDNFP23560 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.37□□□□□ -1.87
BDNFP23560 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.37□□□□□ -1.87
BDNFP23560 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
BDNFP23560 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.37□□□□□ -1.87
BDNFP23560 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.37□□□□□ -1.87
BDNFP23560 RPL7P25-201ENST00000404151 721 ntBASIC3.37□□□□□ -1.87
BDNFP23560 RPL19P1-201ENST00000411635 428 ntBASIC3.37□□□□□ -1.87
BDNFP23560 AC007899.1-201ENST00000412776 775 ntBASIC3.37□□□□□ -1.87
BDNFP23560 SEPT2P1-201ENST00000419651 180 ntBASIC3.37□□□□□ -1.87
BDNFP23560 AL353729.1-201ENST00000425044 720 ntBASIC3.37□□□□□ -1.87
BDNFP23560 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC3.37□□□□□ -1.87
BDNFP23560 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC3.37□□□□□ -1.87
BDNFP23560 AL445687.1-201ENST00000439946 251 ntBASIC3.37□□□□□ -1.87
BDNFP23560 MTND4P25-201ENST00000441039 533 ntBASIC3.37□□□□□ -1.87
BDNFP23560 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC3.37□□□□□ -1.87
BDNFP23560 ST13P20-201ENST00000447996 1065 ntBASIC3.37□□□□□ -1.87
BDNFP23560 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC3.37□□□□□ -1.87
BDNFP23560 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
BDNFP23560 AC006445.1-201ENST00000491925 405 ntBASIC3.37□□□□□ -1.87
BDNFP23560 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC3.37□□□□□ -1.87
BDNFP23560 RNA5SP471-201ENST00000516971 106 ntBASIC3.37□□□□□ -1.87
BDNFP23560 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC3.37□□□□□ -1.87
BDNFP23560 AC024619.4-201ENST00000580924 316 ntBASIC3.37□□□□□ -1.87
BDNFP23560 MIR3117-201ENST00000584034 78 ntBASIC3.37□□□□□ -1.87
BDNFP23560 AP001981.2-201ENST00000603241 418 ntBASIC3.37□□□□□ -1.87
BDNFP23560 AP000403.1-201ENST00000603349 851 ntBASIC3.37□□□□□ -1.87
BDNFP23560 AC104763.2-201ENST00000604179 382 ntBASIC3.37□□□□□ -1.87
BDNFP23560 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.37□□□□□ -1.87
BDNFP23560 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.37□□□□□ -1.87
BDNFP23560 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC3.37□□□□□ -1.87
BDNFP23560 uc_338.25-201ENST00000613756 156 ntBASIC3.37□□□□□ -1.87
BDNFP23560 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC3.37□□□□□ -1.87
BDNFP23560 AC140725.3-201ENST00000616193 880 ntBASIC3.37□□□□□ -1.87
BDNFP23560 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC3.37□□□□□ -1.87
BDNFP23560 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
BDNFP23560 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC3.37□□□□□ -1.87
BDNFP23560 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.37□□□□□ -1.87
BDNFP23560 MTND5P30-201ENST00000452896 1731 ntBASIC3.36□□□□□ -1.87
BDNFP23560 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC3.36□□□□□ -1.87
BDNFP23560 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.36□□□□□ -1.87
BDNFP23560 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC3.36□□□□□ -1.87
BDNFP23560 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC3.36□□□□□ -1.87
BDNFP23560 RNU6-512P-201ENST00000364438 103 ntBASIC3.36□□□□□ -1.87
BDNFP23560 RNU6-660P-201ENST00000364566 109 ntBASIC3.36□□□□□ -1.87
BDNFP23560 MIR128-1-201ENST00000384921 82 ntBASIC3.36□□□□□ -1.87
BDNFP23560 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
BDNFP23560 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC3.36□□□□□ -1.87
BDNFP23560 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC3.36□□□□□ -1.87
BDNFP23560 Z99127.3-201ENST00000448158 395 ntBASIC3.36□□□□□ -1.87
BDNFP23560 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC3.36□□□□□ -1.87
BDNFP23560 RPL39P36-201ENST00000490784 156 ntBASIC3.36□□□□□ -1.87
BDNFP23560 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC3.36□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 93.4 ms