Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 PPIAL4G-201ENST00000419275 3856 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
COL9A1P20849 OAS2-201ENST00000342315 3613 ntAPPRIS P3 TSL 1 (best) BASIC5.76□□□□□ -1.49
COL9A1P20849 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC5.76□□□□□ -1.49
COL9A1P20849 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
COL9A1P20849 RN7SKP145-201ENST00000363291 303 ntBASIC5.76□□□□□ -1.49
COL9A1P20849 Y_RNA.333-201ENST00000365274 102 ntBASIC5.76□□□□□ -1.49
COL9A1P20849 RNA5SP30-201ENST00000365552 115 ntBASIC5.76□□□□□ -1.49
COL9A1P20849 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC5.76□□□□□ -1.49
COL9A1P20849 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC5.76□□□□□ -1.49
COL9A1P20849 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC5.76□□□□□ -1.49
COL9A1P20849 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC5.76□□□□□ -1.49
COL9A1P20849 TRIM6-205ENST00000445329 2951 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
COL9A1P20849 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC5.76□□□□□ -1.49
COL9A1P20849 RPL21P126-201ENST00000470049 478 ntBASIC5.76□□□□□ -1.49
COL9A1P20849 RPS20P22-201ENST00000473700 357 ntBASIC5.76□□□□□ -1.49
COL9A1P20849 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC5.76□□□□□ -1.49
COL9A1P20849 AC020593.1-201ENST00000507399 299 ntBASIC5.76□□□□□ -1.49
COL9A1P20849 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC5.76□□□□□ -1.49
COL9A1P20849 UBE2Q2P8-201ENST00000560644 102 ntBASIC5.76□□□□□ -1.49
COL9A1P20849 AC106785.1-201ENST00000565935 262 ntBASIC5.76□□□□□ -1.49
COL9A1P20849 LARP7P3-201ENST00000579888 337 ntBASIC5.76□□□□□ -1.49
COL9A1P20849 AC023043.3-201ENST00000593113 385 ntBASIC5.76□□□□□ -1.49
COL9A1P20849 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC5.76□□□□□ -1.49
COL9A1P20849 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC5.76□□□□□ -1.49
COL9A1P20849 AL353748.2-201ENST00000622148 471 ntBASIC5.76□□□□□ -1.49
COL9A1P20849 SH3D19-201ENST00000304527 5273 ntAPPRIS P3 TSL 2 BASIC5.76□□□□□ -1.49
COL9A1P20849 ZC3H11A-202ENST00000367210 5877 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
COL9A1P20849 CCDC80-201ENST00000206423 12430 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
COL9A1P20849 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
COL9A1P20849 ST6GALNAC3-201ENST00000328299 6861 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
COL9A1P20849 ADAMDEC1-201ENST00000256412 2348 ntAPPRIS P3 TSL 1 (best) BASIC5.76□□□□□ -1.49
COL9A1P20849 MTND5P32-201ENST00000560711 1802 ntBASIC5.76□□□□□ -1.49
COL9A1P20849 CACNA1E-202ENST00000358338 14700 ntAPPRIS ALT2 TSL 5 BASIC5.76□□□□□ -1.49
COL9A1P20849 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL9A1P20849 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC5.75□□□□□ -1.49
COL9A1P20849 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL9A1P20849 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC5.75□□□□□ -1.49
COL9A1P20849 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL9A1P20849 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL9A1P20849 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL9A1P20849 RNU6-527P-201ENST00000363425 104 ntBASIC5.75□□□□□ -1.49
COL9A1P20849 RNU6-72P-201ENST00000384285 79 ntBASIC5.75□□□□□ -1.49
COL9A1P20849 MIR670-201ENST00000390142 98 ntBASIC5.75□□□□□ -1.49
COL9A1P20849 GPS2P1-201ENST00000411761 986 ntBASIC5.75□□□□□ -1.49
COL9A1P20849 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC5.75□□□□□ -1.49
COL9A1P20849 NDUFB4P7-201ENST00000423198 363 ntBASIC5.75□□□□□ -1.49
COL9A1P20849 AL358075.3-201ENST00000426289 226 ntBASIC5.75□□□□□ -1.49
COL9A1P20849 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC5.75□□□□□ -1.49
COL9A1P20849 snoU13.24-201ENST00000458998 104 ntBASIC5.75□□□□□ -1.49
COL9A1P20849 RNU7-107P-201ENST00000459121 61 ntBASIC5.75□□□□□ -1.49
COL9A1P20849 UBE2Q2P9-201ENST00000490086 202 ntBASIC5.75□□□□□ -1.49
COL9A1P20849 AL035690.1-201ENST00000490892 383 ntBASIC5.75□□□□□ -1.49
COL9A1P20849 AC021006.3-201ENST00000530771 192 ntBASIC5.75□□□□□ -1.49
COL9A1P20849 AC027369.5-201ENST00000533838 755 ntBASIC5.75□□□□□ -1.49
COL9A1P20849 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC5.75□□□□□ -1.49
COL9A1P20849 AL356157.2-201ENST00000605122 111 ntBASIC5.75□□□□□ -1.49
COL9A1P20849 AL078604.3-201ENST00000615580 211 ntBASIC5.75□□□□□ -1.49
COL9A1P20849 AC133552.1-201ENST00000569988 4007 ntBASIC5.75□□□□□ -1.49
COL9A1P20849 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
COL9A1P20849 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC5.75□□□□□ -1.49
COL9A1P20849 ZNF337-202ENST00000376436 3613 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL9A1P20849 LINC01920-201ENST00000441356 2528 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
COL9A1P20849 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL9A1P20849 SRP72P2-201ENST00000344851 1979 ntBASIC5.75□□□□□ -1.49
COL9A1P20849 ALKBH8-205ENST00000428149 4079 ntAPPRIS P3 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL9A1P20849 TPH1-201ENST00000250018 5325 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL9A1P20849 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC5.74□□□□□ -1.49
COL9A1P20849 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL9A1P20849 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
COL9A1P20849 USP8-204ENST00000425032 3559 ntTSL 2 BASIC5.74□□□□□ -1.49
COL9A1P20849 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL9A1P20849 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL9A1P20849 MIR514A1-201ENST00000385133 98 ntBASIC5.74□□□□□ -1.49
COL9A1P20849 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
COL9A1P20849 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC5.74□□□□□ -1.49
COL9A1P20849 AL589765.3-201ENST00000446084 462 ntBASIC5.74□□□□□ -1.49
COL9A1P20849 RNU6-966P-201ENST00000516479 104 ntBASIC5.74□□□□□ -1.49
COL9A1P20849 RNU6-572P-201ENST00000516724 80 ntBASIC5.74□□□□□ -1.49
COL9A1P20849 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC5.74□□□□□ -1.49
COL9A1P20849 AC021269.2-201ENST00000532318 330 ntBASIC5.74□□□□□ -1.49
COL9A1P20849 AC109810.1-201ENST00000534066 224 ntBASIC5.74□□□□□ -1.49
COL9A1P20849 MIR3646-201ENST00000578301 84 ntBASIC5.74□□□□□ -1.49
COL9A1P20849 SNORD84-203ENST00000584275 78 ntBASIC5.74□□□□□ -1.49
COL9A1P20849 AC119868.1-202ENST00000584741 347 ntTSL 2 BASIC5.74□□□□□ -1.49
COL9A1P20849 VN1R85P-201ENST00000601587 426 ntBASIC5.74□□□□□ -1.49
COL9A1P20849 DEFB117-201ENST00000602356 141 ntBASIC5.74□□□□□ -1.49
COL9A1P20849 AL357075.2-201ENST00000614906 189 ntBASIC5.74□□□□□ -1.49
COL9A1P20849 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL9A1P20849 RASGRP1-203ENST00000450598 2296 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
COL9A1P20849 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL9A1P20849 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
COL9A1P20849 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL9A1P20849 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
COL9A1P20849 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC5.74□□□□□ -1.49
COL9A1P20849 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC5.74□□□□□ -1.49
COL9A1P20849 MDM4-216ENST00000616250 9597 ntTSL 5 BASIC5.74□□□□□ -1.49
COL9A1P20849 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL9A1P20849 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL9A1P20849 PSMB2-202ENST00000621781 4217 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
COL9A1P20849 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC5.74□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 113.6 ms