Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 AL160275.2-201ENST00000412010 394 ntBASIC4.27□□□□□ -1.73
CBX4O00257 AC108032.1-201ENST00000416706 207 ntBASIC4.27□□□□□ -1.73
CBX4O00257 AL356095.1-201ENST00000417217 199 ntBASIC4.27□□□□□ -1.73
CBX4O00257 BTF3L4P3-201ENST00000418879 476 ntBASIC4.27□□□□□ -1.73
CBX4O00257 ACTR3BP6-201ENST00000422332 1241 ntBASIC4.27□□□□□ -1.73
CBX4O00257 AL590383.1-201ENST00000428602 75 ntBASIC4.27□□□□□ -1.73
CBX4O00257 RNU7-167P-201ENST00000459160 62 ntBASIC4.27□□□□□ -1.73
CBX4O00257 DYNLL1P5-201ENST00000467158 270 ntBASIC4.27□□□□□ -1.73
CBX4O00257 HMGN1P13-201ENST00000505795 138 ntBASIC4.27□□□□□ -1.73
CBX4O00257 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC4.27□□□□□ -1.73
CBX4O00257 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC4.27□□□□□ -1.73
CBX4O00257 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC4.27□□□□□ -1.73
CBX4O00257 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
CBX4O00257 RNU6-277P-201ENST00000516272 106 ntBASIC4.27□□□□□ -1.73
CBX4O00257 RNU6-914P-201ENST00000516749 109 ntBASIC4.27□□□□□ -1.73
CBX4O00257 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC4.27□□□□□ -1.73
CBX4O00257 MAL2-206ENST00000522187 547 ntTSL 4 BASIC4.27□□□□□ -1.73
CBX4O00257 ATP5F1P5-201ENST00000526403 760 ntBASIC4.27□□□□□ -1.73
CBX4O00257 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC4.27□□□□□ -1.73
CBX4O00257 AP000889.2-201ENST00000532684 490 ntBASIC4.27□□□□□ -1.73
CBX4O00257 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC4.27□□□□□ -1.73
CBX4O00257 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC4.27□□□□□ -1.73
CBX4O00257 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC4.27□□□□□ -1.73
CBX4O00257 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC4.27□□□□□ -1.73
CBX4O00257 MIR3941-201ENST00000582572 103 ntBASIC4.27□□□□□ -1.73
CBX4O00257 5S_rRNA.16-201ENST00000612928 119 ntBASIC4.27□□□□□ -1.73
CBX4O00257 MIR6875-201ENST00000617506 72 ntBASIC4.27□□□□□ -1.73
CBX4O00257 AC112484.5-201ENST00000624189 228 ntBASIC4.27□□□□□ -1.73
CBX4O00257 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC4.27□□□□□ -1.73
CBX4O00257 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
CBX4O00257 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
CBX4O00257 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC4.26□□□□□ -1.73
CBX4O00257 AC087190.4-201ENST00000574616 8334 ntBASIC4.26□□□□□ -1.73
CBX4O00257 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
CBX4O00257 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.26□□□□□ -1.73
CBX4O00257 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC4.26□□□□□ -1.73
CBX4O00257 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
CBX4O00257 MIR554-201ENST00000384874 96 ntBASIC4.26□□□□□ -1.73
CBX4O00257 RN7SKP202-201ENST00000410439 330 ntBASIC4.26□□□□□ -1.73
CBX4O00257 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC4.26□□□□□ -1.73
CBX4O00257 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC4.26□□□□□ -1.73
CBX4O00257 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC4.26□□□□□ -1.73
CBX4O00257 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC4.26□□□□□ -1.73
CBX4O00257 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC4.26□□□□□ -1.73
CBX4O00257 AL162151.2-201ENST00000448875 158 ntBASIC4.26□□□□□ -1.73
CBX4O00257 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC4.26□□□□□ -1.73
CBX4O00257 OARD1-209ENST00000471367 401 ntTSL 2 BASIC4.26□□□□□ -1.73
CBX4O00257 RPL31P13-201ENST00000484151 370 ntBASIC4.26□□□□□ -1.73
CBX4O00257 AL132838.2-201ENST00000492041 314 ntBASIC4.26□□□□□ -1.73
CBX4O00257 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC4.26□□□□□ -1.73
CBX4O00257 APOOP4-201ENST00000513530 597 ntBASIC4.26□□□□□ -1.73
CBX4O00257 RNU2-69P-201ENST00000516061 100 ntBASIC4.26□□□□□ -1.73
CBX4O00257 RNU6-1256P-201ENST00000516539 103 ntBASIC4.26□□□□□ -1.73
CBX4O00257 RNU6-273P-201ENST00000516937 96 ntBASIC4.26□□□□□ -1.73
CBX4O00257 IGLV3-26-201ENST00000520756 302 ntBASIC4.26□□□□□ -1.73
CBX4O00257 AC135001.1-201ENST00000544546 283 ntBASIC4.26□□□□□ -1.73
CBX4O00257 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC4.26□□□□□ -1.73
CBX4O00257 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC4.26□□□□□ -1.73
CBX4O00257 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC4.26□□□□□ -1.73
CBX4O00257 MIR5692A1-201ENST00000580523 69 ntBASIC4.26□□□□□ -1.73
CBX4O00257 AC044792.1-201ENST00000593294 196 ntBASIC4.26□□□□□ -1.73
CBX4O00257 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC4.26□□□□□ -1.73
CBX4O00257 VPS8-228ENST00000628962 207 ntTSL 5 BASIC4.26□□□□□ -1.73
CBX4O00257 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC4.26□□□□□ -1.73
CBX4O00257 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
CBX4O00257 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC4.26□□□□□ -1.73
CBX4O00257 HSPA8P4-201ENST00000511877 1920 ntBASIC4.26□□□□□ -1.73
CBX4O00257 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC4.26□□□□□ -1.73
CBX4O00257 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC4.26□□□□□ -1.73
CBX4O00257 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC4.25□□□□□ -1.73
CBX4O00257 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC4.25□□□□□ -1.73
CBX4O00257 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
CBX4O00257 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.25□□□□□ -1.73
CBX4O00257 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC4.25□□□□□ -1.73
CBX4O00257 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC4.25□□□□□ -1.73
CBX4O00257 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC4.25□□□□□ -1.73
CBX4O00257 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC4.25□□□□□ -1.73
CBX4O00257 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
CBX4O00257 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
CBX4O00257 RNU6-600P-201ENST00000362524 99 ntBASIC4.25□□□□□ -1.73
CBX4O00257 Y_RNA.58-201ENST00000362807 102 ntBASIC4.25□□□□□ -1.73
CBX4O00257 Y_RNA.67-201ENST00000362870 100 ntBASIC4.25□□□□□ -1.73
CBX4O00257 RNU6-1252P-201ENST00000363054 104 ntBASIC4.25□□□□□ -1.73
CBX4O00257 Y_RNA.154-201ENST00000363624 102 ntBASIC4.25□□□□□ -1.73
CBX4O00257 RNA5SP130-201ENST00000364431 114 ntBASIC4.25□□□□□ -1.73
CBX4O00257 Y_RNA.301-201ENST00000364990 103 ntBASIC4.25□□□□□ -1.73
CBX4O00257 RNY3P1-201ENST00000365085 102 ntBASIC4.25□□□□□ -1.73
CBX4O00257 RNY3-201ENST00000365484 102 ntBASIC4.25□□□□□ -1.73
CBX4O00257 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC4.25□□□□□ -1.73
CBX4O00257 Y_RNA.431-201ENST00000384086 102 ntBASIC4.25□□□□□ -1.73
CBX4O00257 Y_RNA.490-201ENST00000384413 102 ntBASIC4.25□□□□□ -1.73
CBX4O00257 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
CBX4O00257 FAT1P1-201ENST00000406588 507 ntBASIC4.25□□□□□ -1.73
CBX4O00257 RN7SKP177-201ENST00000410567 355 ntBASIC4.25□□□□□ -1.73
CBX4O00257 EIF4EP1-201ENST00000422311 642 ntBASIC4.25□□□□□ -1.73
CBX4O00257 NDUFB4P7-201ENST00000423198 363 ntBASIC4.25□□□□□ -1.73
CBX4O00257 RPL7P2-201ENST00000427639 268 ntBASIC4.25□□□□□ -1.73
CBX4O00257 AL669831.1-202ENST00000428504 417 ntBASIC4.25□□□□□ -1.73
CBX4O00257 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC4.25□□□□□ -1.73
CBX4O00257 GTF2IP13-201ENST00000438487 386 ntBASIC4.25□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 99.4 ms