Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 AC004696.1-201ENST00000614345 607 ntBASIC5.44□□□□□ -1.54
CCDC87Q9NVE4 PISRT1.1-201ENST00000616930 107 ntBASIC5.44□□□□□ -1.54
CCDC87Q9NVE4 AC007546.2-201ENST00000623996 360 ntBASIC5.44□□□□□ -1.54
CCDC87Q9NVE4 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC87Q9NVE4 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC87Q9NVE4 MAPK10-286ENST00000641208 8747 ntBASIC5.43□□□□□ -1.54
CCDC87Q9NVE4 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC5.43□□□□□ -1.54
CCDC87Q9NVE4 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC87Q9NVE4 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC5.43□□□□□ -1.54
CCDC87Q9NVE4 KPNA2P1-201ENST00000458289 1591 ntBASIC5.43□□□□□ -1.54
CCDC87Q9NVE4 AL049641.1-201ENST00000441055 1948 ntBASIC5.43□□□□□ -1.54
CCDC87Q9NVE4 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC87Q9NVE4 MIR7-3-201ENST00000384898 110 ntBASIC5.43□□□□□ -1.54
CCDC87Q9NVE4 RNU6-817P-201ENST00000391083 104 ntBASIC5.43□□□□□ -1.54
CCDC87Q9NVE4 MIR921-201ENST00000401133 56 ntBASIC5.43□□□□□ -1.54
CCDC87Q9NVE4 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC5.43□□□□□ -1.54
CCDC87Q9NVE4 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC5.43□□□□□ -1.54
CCDC87Q9NVE4 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC87Q9NVE4 IPO7P1-201ENST00000442031 636 ntBASIC5.43□□□□□ -1.54
CCDC87Q9NVE4 RNA5SP246-201ENST00000458909 119 ntBASIC5.43□□□□□ -1.54
CCDC87Q9NVE4 RNA5SP103-201ENST00000459503 118 ntBASIC5.43□□□□□ -1.54
CCDC87Q9NVE4 AL135752.1-201ENST00000479477 471 ntBASIC5.43□□□□□ -1.54
CCDC87Q9NVE4 RPL21P103-201ENST00000479921 488 ntBASIC5.43□□□□□ -1.54
CCDC87Q9NVE4 RN7SKP60-201ENST00000516985 239 ntBASIC5.43□□□□□ -1.54
CCDC87Q9NVE4 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC5.43□□□□□ -1.54
CCDC87Q9NVE4 MIR5685-201ENST00000579080 79 ntBASIC5.43□□□□□ -1.54
CCDC87Q9NVE4 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC5.43□□□□□ -1.54
CCDC87Q9NVE4 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC5.43□□□□□ -1.54
CCDC87Q9NVE4 AC010201.1-201ENST00000605051 540 ntBASIC5.43□□□□□ -1.54
CCDC87Q9NVE4 SDR42E1P2-201ENST00000614861 481 ntBASIC5.43□□□□□ -1.54
CCDC87Q9NVE4 AC093535.2-201ENST00000624769 2326 ntBASIC5.43□□□□□ -1.54
CCDC87Q9NVE4 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC87Q9NVE4 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC5.43□□□□□ -1.54
CCDC87Q9NVE4 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC87Q9NVE4 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC87Q9NVE4 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC87Q9NVE4 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
CCDC87Q9NVE4 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC5.42□□□□□ -1.54
CCDC87Q9NVE4 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC87Q9NVE4 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC87Q9NVE4 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC87Q9NVE4 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC5.42□□□□□ -1.54
CCDC87Q9NVE4 SNORA75B-201ENST00000384053 137 ntBASIC5.42□□□□□ -1.54
CCDC87Q9NVE4 RNU6-356P-201ENST00000384140 107 ntBASIC5.42□□□□□ -1.54
CCDC87Q9NVE4 RNU6-196P-201ENST00000384315 107 ntBASIC5.42□□□□□ -1.54
CCDC87Q9NVE4 MIR153-1-201ENST00000384914 90 ntBASIC5.42□□□□□ -1.54
CCDC87Q9NVE4 AL356057.3-201ENST00000402607 340 ntBASIC5.42□□□□□ -1.54
CCDC87Q9NVE4 Y_RNA.646-201ENST00000410980 101 ntBASIC5.42□□□□□ -1.54
CCDC87Q9NVE4 AC113618.1-201ENST00000416747 285 ntBASIC5.42□□□□□ -1.54
CCDC87Q9NVE4 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC5.42□□□□□ -1.54
CCDC87Q9NVE4 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC5.42□□□□□ -1.54
CCDC87Q9NVE4 SNRPEP4-201ENST00000435815 279 ntBASIC5.42□□□□□ -1.54
CCDC87Q9NVE4 AL500522.2-201ENST00000448562 343 ntBASIC5.42□□□□□ -1.54
CCDC87Q9NVE4 AL591623.2-201ENST00000449978 222 ntBASIC5.42□□□□□ -1.54
CCDC87Q9NVE4 RPL37P6-201ENST00000460682 294 ntBASIC5.42□□□□□ -1.54
CCDC87Q9NVE4 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC5.42□□□□□ -1.54
CCDC87Q9NVE4 RPL7P49-201ENST00000471402 708 ntBASIC5.42□□□□□ -1.54
CCDC87Q9NVE4 RPL31P60-201ENST00000478450 367 ntBASIC5.42□□□□□ -1.54
CCDC87Q9NVE4 AC026801.1-201ENST00000497178 464 ntBASIC5.42□□□□□ -1.54
CCDC87Q9NVE4 PTP4A1P4-201ENST00000512479 322 ntBASIC5.42□□□□□ -1.54
CCDC87Q9NVE4 SCARNA13-201ENST00000516672 275 ntBASIC5.42□□□□□ -1.54
CCDC87Q9NVE4 RN7SKP258-201ENST00000517151 304 ntBASIC5.42□□□□□ -1.54
CCDC87Q9NVE4 RNU1-54P-201ENST00000517181 120 ntBASIC5.42□□□□□ -1.54
CCDC87Q9NVE4 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC5.42□□□□□ -1.54
CCDC87Q9NVE4 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC5.42□□□□□ -1.54
CCDC87Q9NVE4 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC5.42□□□□□ -1.54
CCDC87Q9NVE4 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC5.42□□□□□ -1.54
CCDC87Q9NVE4 AC233702.9-201ENST00000581528 203 ntBASIC5.42□□□□□ -1.54
CCDC87Q9NVE4 AL606490.9-201ENST00000603331 271 ntBASIC5.42□□□□□ -1.54
CCDC87Q9NVE4 AC007938.3-201ENST00000604965 623 ntBASIC5.42□□□□□ -1.54
CCDC87Q9NVE4 PLCE1P1-201ENST00000622094 305 ntBASIC5.42□□□□□ -1.54
CCDC87Q9NVE4 AC022418.1-201ENST00000624118 445 ntBASIC5.42□□□□□ -1.54
CCDC87Q9NVE4 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
CCDC87Q9NVE4 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
CCDC87Q9NVE4 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
CCDC87Q9NVE4 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC87Q9NVE4 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC87Q9NVE4 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC5.42□□□□□ -1.54
CCDC87Q9NVE4 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC87Q9NVE4 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC5.42□□□□□ -1.54
CCDC87Q9NVE4 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC5.42□□□□□ -1.54
CCDC87Q9NVE4 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC87Q9NVE4 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC87Q9NVE4 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC87Q9NVE4 AL592437.2-201ENST00000421655 2434 ntBASIC5.42□□□□□ -1.54
CCDC87Q9NVE4 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
CCDC87Q9NVE4 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC5.41□□□□□ -1.54
CCDC87Q9NVE4 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
CCDC87Q9NVE4 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC87Q9NVE4 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC5.41□□□□□ -1.54
CCDC87Q9NVE4 Y_RNA.158-201ENST00000363651 101 ntBASIC5.41□□□□□ -1.54
CCDC87Q9NVE4 CISD1P1-201ENST00000393907 327 ntBASIC5.41□□□□□ -1.54
CCDC87Q9NVE4 AC080125.1-201ENST00000414888 684 ntBASIC5.41□□□□□ -1.54
CCDC87Q9NVE4 AC018865.2-201ENST00000423631 129 ntBASIC5.41□□□□□ -1.54
CCDC87Q9NVE4 AL669831.1-202ENST00000428504 417 ntBASIC5.41□□□□□ -1.54
CCDC87Q9NVE4 CKS1BP5-201ENST00000434172 273 ntBASIC5.41□□□□□ -1.54
CCDC87Q9NVE4 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC5.41□□□□□ -1.54
CCDC87Q9NVE4 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC5.41□□□□□ -1.54
CCDC87Q9NVE4 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC5.41□□□□□ -1.54
CCDC87Q9NVE4 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC5.41□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 104.2 ms