Protein–RNA interactions for Protein: Q9NPD3

EXOSC4, Exosome complex component RRP41, humanhuman

Known RBP Predictions only

Length 245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC4Q9NPD3 AL117351.1-201ENST00000438864 766 ntBASIC2.13□□□□□ -2.07
EXOSC4Q9NPD3 AC025750.2-201ENST00000442609 450 ntBASIC2.13□□□□□ -2.07
EXOSC4Q9NPD3 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC2.13□□□□□ -2.07
EXOSC4Q9NPD3 AP000936.2-201ENST00000447151 681 ntBASIC2.13□□□□□ -2.07
EXOSC4Q9NPD3 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC2.13□□□□□ -2.07
EXOSC4Q9NPD3 WDR78-207ENST00000488333 613 ntTSL 3 BASIC2.13□□□□□ -2.07
EXOSC4Q9NPD3 AC119751.4-201ENST00000507498 357 ntBASIC2.13□□□□□ -2.07
EXOSC4Q9NPD3 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC2.13□□□□□ -2.07
EXOSC4Q9NPD3 MTATP6P9-201ENST00000515039 680 ntBASIC2.13□□□□□ -2.07
EXOSC4Q9NPD3 AC027701.1-201ENST00000520155 823 ntTSL 3 BASIC2.13□□□□□ -2.07
EXOSC4Q9NPD3 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC2.13□□□□□ -2.07
EXOSC4Q9NPD3 ATP5F1P5-201ENST00000526403 760 ntBASIC2.13□□□□□ -2.07
EXOSC4Q9NPD3 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC2.13□□□□□ -2.07
EXOSC4Q9NPD3 ERP27-202ENST00000540097 993 ntTSL 2 BASIC2.13□□□□□ -2.07
EXOSC4Q9NPD3 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC2.13□□□□□ -2.07
EXOSC4Q9NPD3 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
EXOSC4Q9NPD3 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC2.13□□□□□ -2.07
EXOSC4Q9NPD3 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC2.13□□□□□ -2.07
EXOSC4Q9NPD3 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC2.13□□□□□ -2.07
EXOSC4Q9NPD3 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC2.13□□□□□ -2.07
EXOSC4Q9NPD3 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC2.13□□□□□ -2.07
EXOSC4Q9NPD3 VN1R90P-201ENST00000595717 726 ntBASIC2.13□□□□□ -2.07
EXOSC4Q9NPD3 NRBF2P5-201ENST00000603087 788 ntBASIC2.13□□□□□ -2.07
EXOSC4Q9NPD3 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC2.13□□□□□ -2.07
EXOSC4Q9NPD3 AC106052.1-201ENST00000608029 497 ntBASIC2.13□□□□□ -2.07
EXOSC4Q9NPD3 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC2.13□□□□□ -2.07
EXOSC4Q9NPD3 HMGB1P24-202ENST00000615653 685 ntBASIC2.13□□□□□ -2.07
EXOSC4Q9NPD3 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC2.13□□□□□ -2.07
EXOSC4Q9NPD3 MIR6130-201ENST00000619419 109 ntBASIC2.13□□□□□ -2.07
EXOSC4Q9NPD3 AC006386.2-201ENST00000624491 75 ntBASIC2.13□□□□□ -2.07
EXOSC4Q9NPD3 AC012005.1-201ENST00000624575 75 ntBASIC2.13□□□□□ -2.07
EXOSC4Q9NPD3 AP003399.1-201ENST00000637534 361 ntBASIC2.13□□□□□ -2.07
EXOSC4Q9NPD3 DLD-214ENST00000639772 421 ntTSL 5 BASIC2.13□□□□□ -2.07
EXOSC4Q9NPD3 AC005832.2-201ENST00000538921 1430 ntBASIC2.13□□□□□ -2.07
EXOSC4Q9NPD3 AL359693.1-201ENST00000614959 2407 ntBASIC2.13□□□□□ -2.07
EXOSC4Q9NPD3 AC007785.2-201ENST00000598627 1916 ntBASIC2.13□□□□□ -2.07
EXOSC4Q9NPD3 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
EXOSC4Q9NPD3 AL365361.1-201ENST00000566942 3481 ntBASIC2.12□□□□□ -2.07
EXOSC4Q9NPD3 RNU6-636P-201ENST00000384598 107 ntBASIC2.12□□□□□ -2.07
EXOSC4Q9NPD3 RNU6-906P-201ENST00000384700 70 ntBASIC2.12□□□□□ -2.07
EXOSC4Q9NPD3 MIR483-201ENST00000385070 76 ntBASIC2.12□□□□□ -2.07
EXOSC4Q9NPD3 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
EXOSC4Q9NPD3 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC2.12□□□□□ -2.07
EXOSC4Q9NPD3 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC2.12□□□□□ -2.07
EXOSC4Q9NPD3 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC2.12□□□□□ -2.07
EXOSC4Q9NPD3 AC019097.1-201ENST00000424783 735 ntBASIC2.12□□□□□ -2.07
EXOSC4Q9NPD3 AC063976.3-201ENST00000426849 329 ntBASIC2.12□□□□□ -2.07
EXOSC4Q9NPD3 AC008850.1-201ENST00000427546 362 ntBASIC2.12□□□□□ -2.07
EXOSC4Q9NPD3 USP9YP24-201ENST00000434374 697 ntBASIC2.12□□□□□ -2.07
EXOSC4Q9NPD3 USP9YP17-201ENST00000444617 696 ntBASIC2.12□□□□□ -2.07
EXOSC4Q9NPD3 AL031659.1-201ENST00000447075 539 ntBASIC2.12□□□□□ -2.07
EXOSC4Q9NPD3 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC2.12□□□□□ -2.07
EXOSC4Q9NPD3 MTND2P24-201ENST00000453434 806 ntBASIC2.12□□□□□ -2.07
EXOSC4Q9NPD3 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.12□□□□□ -2.07
EXOSC4Q9NPD3 LINC00888-204ENST00000487386 421 ntBASIC2.12□□□□□ -2.07
EXOSC4Q9NPD3 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC2.12□□□□□ -2.07
EXOSC4Q9NPD3 AHI1-208ENST00000488690 712 ntTSL 5 BASIC2.12□□□□□ -2.07
EXOSC4Q9NPD3 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC2.12□□□□□ -2.07
EXOSC4Q9NPD3 GTF2IP9-201ENST00000502460 301 ntBASIC2.12□□□□□ -2.07
EXOSC4Q9NPD3 AC010587.2-201ENST00000511727 448 ntBASIC2.12□□□□□ -2.07
EXOSC4Q9NPD3 RN7SKP132-201ENST00000516001 208 ntBASIC2.12□□□□□ -2.07
EXOSC4Q9NPD3 SCARNA15.2-201ENST00000516409 127 ntBASIC2.12□□□□□ -2.07
EXOSC4Q9NPD3 AP002748.2-201ENST00000528671 348 ntBASIC2.12□□□□□ -2.07
EXOSC4Q9NPD3 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC2.12□□□□□ -2.07
EXOSC4Q9NPD3 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
EXOSC4Q9NPD3 MYL12BP1-201ENST00000569826 507 ntBASIC2.12□□□□□ -2.07
EXOSC4Q9NPD3 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC2.12□□□□□ -2.07
EXOSC4Q9NPD3 LARP7P3-201ENST00000579888 337 ntBASIC2.12□□□□□ -2.07
EXOSC4Q9NPD3 MIR3200-201ENST00000580767 85 ntBASIC2.12□□□□□ -2.07
EXOSC4Q9NPD3 AL353997.4-201ENST00000586196 166 ntBASIC2.12□□□□□ -2.07
EXOSC4Q9NPD3 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC2.12□□□□□ -2.07
EXOSC4Q9NPD3 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC2.12□□□□□ -2.07
EXOSC4Q9NPD3 BNIP3P39-201ENST00000601077 554 ntBASIC2.12□□□□□ -2.07
EXOSC4Q9NPD3 AC004987.4-201ENST00000603383 338 ntBASIC2.12□□□□□ -2.07
EXOSC4Q9NPD3 OR2AS2P-201ENST00000606902 342 ntBASIC2.12□□□□□ -2.07
EXOSC4Q9NPD3 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.12□□□□□ -2.07
EXOSC4Q9NPD3 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC2.12□□□□□ -2.07
EXOSC4Q9NPD3 U4.3-201ENST00000621047 82 ntBASIC2.12□□□□□ -2.07
EXOSC4Q9NPD3 AP000776.1-201ENST00000530032 1663 ntBASIC2.12□□□□□ -2.07
EXOSC4Q9NPD3 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.12□□□□□ -2.07
EXOSC4Q9NPD3 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
EXOSC4Q9NPD3 AC099786.3-201ENST00000565735 1410 ntBASIC2.11□□□□□ -2.07
EXOSC4Q9NPD3 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC2.11□□□□□ -2.07
EXOSC4Q9NPD3 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
EXOSC4Q9NPD3 SNORA67.1-201ENST00000364749 141 ntBASIC2.11□□□□□ -2.07
EXOSC4Q9NPD3 RNU6-637P-201ENST00000384050 107 ntBASIC2.11□□□□□ -2.07
EXOSC4Q9NPD3 MIR34A-201ENST00000385130 110 ntBASIC2.11□□□□□ -2.07
EXOSC4Q9NPD3 RNU2-52P-201ENST00000410680 190 ntBASIC2.11□□□□□ -2.07
EXOSC4Q9NPD3 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC2.11□□□□□ -2.07
EXOSC4Q9NPD3 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC2.11□□□□□ -2.07
EXOSC4Q9NPD3 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC2.11□□□□□ -2.07
EXOSC4Q9NPD3 RPL23AP83-201ENST00000434984 473 ntBASIC2.11□□□□□ -2.07
EXOSC4Q9NPD3 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC2.11□□□□□ -2.07
EXOSC4Q9NPD3 BNIP3P2-201ENST00000441221 577 ntBASIC2.11□□□□□ -2.07
EXOSC4Q9NPD3 AC233279.1-201ENST00000455300 423 ntBASIC2.11□□□□□ -2.07
EXOSC4Q9NPD3 LINC01075-201ENST00000455977 370 ntTSL 3 BASIC2.11□□□□□ -2.07
EXOSC4Q9NPD3 AC021382.1-201ENST00000483523 359 ntBASIC2.11□□□□□ -2.07
EXOSC4Q9NPD3 AC093281.2-201ENST00000510153 597 ntBASIC2.11□□□□□ -2.07
EXOSC4Q9NPD3 RNU1-104P-201ENST00000517280 175 ntBASIC2.11□□□□□ -2.07
EXOSC4Q9NPD3 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC2.11□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 103.4 ms