Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 RNU4-29P-201ENST00000515943 174 ntBASIC4.33□□□□□ -1.72
VTA1Q9NP79 SNORA31.3-201ENST00000516029 96 ntBASIC4.33□□□□□ -1.72
VTA1Q9NP79 SNORA31.8-201ENST00000516327 108 ntBASIC4.33□□□□□ -1.72
VTA1Q9NP79 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC4.33□□□□□ -1.72
VTA1Q9NP79 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC4.33□□□□□ -1.72
VTA1Q9NP79 AC008489.1-201ENST00000524271 483 ntBASIC4.33□□□□□ -1.72
VTA1Q9NP79 CENPUP1-201ENST00000526649 1202 ntBASIC4.33□□□□□ -1.72
VTA1Q9NP79 RANP3-201ENST00000530970 276 ntBASIC4.33□□□□□ -1.72
VTA1Q9NP79 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
VTA1Q9NP79 AP002826.1-201ENST00000608835 315 ntBASIC4.33□□□□□ -1.72
VTA1Q9NP79 AL589994.2-201ENST00000621124 579 ntBASIC4.33□□□□□ -1.72
VTA1Q9NP79 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC4.33□□□□□ -1.72
VTA1Q9NP79 AC099654.5-201ENST00000636479 350 ntBASIC4.33□□□□□ -1.72
VTA1Q9NP79 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC4.33□□□□□ -1.72
VTA1Q9NP79 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
VTA1Q9NP79 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC4.33□□□□□ -1.72
VTA1Q9NP79 SPATA31D2P-201ENST00000429999 4388 ntBASIC4.33□□□□□ -1.72
VTA1Q9NP79 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC4.33□□□□□ -1.72
VTA1Q9NP79 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC4.33□□□□□ -1.72
VTA1Q9NP79 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
VTA1Q9NP79 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
VTA1Q9NP79 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.32□□□□□ -1.72
VTA1Q9NP79 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
VTA1Q9NP79 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
VTA1Q9NP79 CBX3P1-201ENST00000325243 554 ntBASIC4.32□□□□□ -1.72
VTA1Q9NP79 Y_RNA.333-201ENST00000365274 102 ntBASIC4.32□□□□□ -1.72
VTA1Q9NP79 SMIM11P1-201ENST00000369586 178 ntBASIC4.32□□□□□ -1.72
VTA1Q9NP79 RNU6-701P-201ENST00000384059 107 ntBASIC4.32□□□□□ -1.72
VTA1Q9NP79 RNU6-903P-201ENST00000391270 109 ntBASIC4.32□□□□□ -1.72
VTA1Q9NP79 RNU6-1068P-201ENST00000410958 103 ntBASIC4.32□□□□□ -1.72
VTA1Q9NP79 AL513331.1-201ENST00000411908 397 ntBASIC4.32□□□□□ -1.72
VTA1Q9NP79 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC4.32□□□□□ -1.72
VTA1Q9NP79 AC009161.1-201ENST00000417306 376 ntBASIC4.32□□□□□ -1.72
VTA1Q9NP79 ZNF863P-201ENST00000426746 417 ntBASIC4.32□□□□□ -1.72
VTA1Q9NP79 HMGB1P27-201ENST00000431429 603 ntBASIC4.32□□□□□ -1.72
VTA1Q9NP79 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC4.32□□□□□ -1.72
VTA1Q9NP79 AC098614.3-201ENST00000438957 440 ntBASIC4.32□□□□□ -1.72
VTA1Q9NP79 TRAPPC2P3-201ENST00000443200 321 ntBASIC4.32□□□□□ -1.72
VTA1Q9NP79 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC4.32□□□□□ -1.72
VTA1Q9NP79 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC4.32□□□□□ -1.72
VTA1Q9NP79 RPS29P15-201ENST00000458329 171 ntBASIC4.32□□□□□ -1.72
VTA1Q9NP79 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC4.32□□□□□ -1.72
VTA1Q9NP79 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC4.32□□□□□ -1.72
VTA1Q9NP79 TRBV1-201ENST00000476502 284 ntBASIC4.32□□□□□ -1.72
VTA1Q9NP79 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC4.32□□□□□ -1.72
VTA1Q9NP79 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC4.32□□□□□ -1.72
VTA1Q9NP79 RNU6-677P-201ENST00000516914 101 ntBASIC4.32□□□□□ -1.72
VTA1Q9NP79 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC4.32□□□□□ -1.72
VTA1Q9NP79 AC022695.1-201ENST00000522089 237 ntBASIC4.32□□□□□ -1.72
VTA1Q9NP79 AP006587.4-201ENST00000526053 529 ntBASIC4.32□□□□□ -1.72
VTA1Q9NP79 AP004242.1-201ENST00000533701 349 ntBASIC4.32□□□□□ -1.72
VTA1Q9NP79 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC4.32□□□□□ -1.72
VTA1Q9NP79 AC006270.2-201ENST00000578523 652 ntBASIC4.32□□□□□ -1.72
VTA1Q9NP79 AC006023.2-201ENST00000609916 167 ntBASIC4.32□□□□□ -1.72
VTA1Q9NP79 RMST_3.1-201ENST00000611651 109 ntBASIC4.32□□□□□ -1.72
VTA1Q9NP79 AC063943.3-201ENST00000615562 356 ntBASIC4.32□□□□□ -1.72
VTA1Q9NP79 AL359547.2-201ENST00000615810 418 ntBASIC4.32□□□□□ -1.72
VTA1Q9NP79 AC233309.1-201ENST00000619522 751 ntBASIC4.32□□□□□ -1.72
VTA1Q9NP79 AC011155.2-201ENST00000623202 216 ntBASIC4.32□□□□□ -1.72
VTA1Q9NP79 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC4.32□□□□□ -1.72
VTA1Q9NP79 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
VTA1Q9NP79 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC4.32□□□□□ -1.72
VTA1Q9NP79 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
VTA1Q9NP79 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
VTA1Q9NP79 USP8P1-201ENST00000494673 3183 ntBASIC4.31□□□□□ -1.72
VTA1Q9NP79 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC4.31□□□□□ -1.72
VTA1Q9NP79 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
VTA1Q9NP79 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
VTA1Q9NP79 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
VTA1Q9NP79 RNU6-552P-201ENST00000362869 119 ntBASIC4.31□□□□□ -1.72
VTA1Q9NP79 RNU6-1287P-201ENST00000362914 107 ntBASIC4.31□□□□□ -1.72
VTA1Q9NP79 Y_RNA.160-201ENST00000363677 92 ntBASIC4.31□□□□□ -1.72
VTA1Q9NP79 RNU6-1060P-201ENST00000384664 107 ntBASIC4.31□□□□□ -1.72
VTA1Q9NP79 MIR3074-201ENST00000384885 81 ntBASIC4.31□□□□□ -1.72
VTA1Q9NP79 MIR513A2-201ENST00000385249 127 ntBASIC4.31□□□□□ -1.72
VTA1Q9NP79 SNORD37.1-201ENST00000390968 65 ntBASIC4.31□□□□□ -1.72
VTA1Q9NP79 RAP1BP3-201ENST00000407180 549 ntBASIC4.31□□□□□ -1.72
VTA1Q9NP79 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC4.31□□□□□ -1.72
VTA1Q9NP79 AC114491.1-201ENST00000416095 246 ntBASIC4.31□□□□□ -1.72
VTA1Q9NP79 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC4.31□□□□□ -1.72
VTA1Q9NP79 RPL36AP53-201ENST00000432891 316 ntBASIC4.31□□□□□ -1.72
VTA1Q9NP79 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
VTA1Q9NP79 SNRPFP3-201ENST00000457792 225 ntBASIC4.31□□□□□ -1.72
VTA1Q9NP79 AC087588.1-201ENST00000462203 316 ntBASIC4.31□□□□□ -1.72
VTA1Q9NP79 AP000852.1-201ENST00000472460 573 ntBASIC4.31□□□□□ -1.72
VTA1Q9NP79 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC4.31□□□□□ -1.72
VTA1Q9NP79 AC106707.2-201ENST00000484182 374 ntBASIC4.31□□□□□ -1.72
VTA1Q9NP79 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC4.31□□□□□ -1.72
VTA1Q9NP79 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC4.31□□□□□ -1.72
VTA1Q9NP79 AC098591.2-201ENST00000510152 315 ntBASIC4.31□□□□□ -1.72
VTA1Q9NP79 AC104619.4-201ENST00000510773 249 ntBASIC4.31□□□□□ -1.72
VTA1Q9NP79 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC4.31□□□□□ -1.72
VTA1Q9NP79 AC046134.1-201ENST00000514454 666 ntBASIC4.31□□□□□ -1.72
VTA1Q9NP79 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC4.31□□□□□ -1.72
VTA1Q9NP79 RNU6-927P-201ENST00000516199 100 ntBASIC4.31□□□□□ -1.72
VTA1Q9NP79 RNU6-685P-201ENST00000517088 95 ntBASIC4.31□□□□□ -1.72
VTA1Q9NP79 RNU6-1073P-201ENST00000517182 106 ntBASIC4.31□□□□□ -1.72
VTA1Q9NP79 IGKV2D-23-201ENST00000518179 286 ntBASIC4.31□□□□□ -1.72
VTA1Q9NP79 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC4.31□□□□□ -1.72
VTA1Q9NP79 ATP5F1P5-201ENST00000526403 760 ntBASIC4.31□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 78.9 ms