Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 AL390023.1-201ENST00000428836 262 ntBASIC3.39□□□□□ -1.87
ZNF541Q9H0D2 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.39□□□□□ -1.87
ZNF541Q9H0D2 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC3.39□□□□□ -1.87
ZNF541Q9H0D2 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3.39□□□□□ -1.87
ZNF541Q9H0D2 USP9YP12-201ENST00000450481 570 ntBASIC3.39□□□□□ -1.87
ZNF541Q9H0D2 RPS27AP8-201ENST00000452665 445 ntBASIC3.39□□□□□ -1.87
ZNF541Q9H0D2 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC3.39□□□□□ -1.87
ZNF541Q9H0D2 AC010468.1-201ENST00000461022 817 ntBASIC3.39□□□□□ -1.87
ZNF541Q9H0D2 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
ZNF541Q9H0D2 RPL23AP41-201ENST00000484754 458 ntBASIC3.39□□□□□ -1.87
ZNF541Q9H0D2 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
ZNF541Q9H0D2 AL359273.1-201ENST00000510918 627 ntBASIC3.39□□□□□ -1.87
ZNF541Q9H0D2 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC3.39□□□□□ -1.87
ZNF541Q9H0D2 AC091965.2-201ENST00000512324 613 ntBASIC3.39□□□□□ -1.87
ZNF541Q9H0D2 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC3.39□□□□□ -1.87
ZNF541Q9H0D2 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC3.39□□□□□ -1.87
ZNF541Q9H0D2 RNU6-390P-201ENST00000516259 103 ntBASIC3.39□□□□□ -1.87
ZNF541Q9H0D2 AC109329.2-201ENST00000519658 482 ntBASIC3.39□□□□□ -1.87
ZNF541Q9H0D2 DEFB108D-201ENST00000527787 222 ntBASIC3.39□□□□□ -1.87
ZNF541Q9H0D2 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC3.39□□□□□ -1.87
ZNF541Q9H0D2 SYF2P1-201ENST00000550658 413 ntBASIC3.39□□□□□ -1.87
ZNF541Q9H0D2 ACTR3BP3-201ENST00000565577 979 ntBASIC3.39□□□□□ -1.87
ZNF541Q9H0D2 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC3.39□□□□□ -1.87
ZNF541Q9H0D2 COX6CP3-201ENST00000580869 223 ntBASIC3.39□□□□□ -1.87
ZNF541Q9H0D2 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC3.39□□□□□ -1.87
ZNF541Q9H0D2 ABBA01006766.1-201ENST00000584728 294 ntBASIC3.39□□□□□ -1.87
ZNF541Q9H0D2 AC011468.4-201ENST00000603942 409 ntBASIC3.39□□□□□ -1.87
ZNF541Q9H0D2 AC121334.2-201ENST00000605387 271 ntBASIC3.39□□□□□ -1.87
ZNF541Q9H0D2 AC068276.1-201ENST00000605793 379 ntBASIC3.39□□□□□ -1.87
ZNF541Q9H0D2 AC007038.2-201ENST00000608095 740 ntBASIC3.39□□□□□ -1.87
ZNF541Q9H0D2 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC3.39□□□□□ -1.87
ZNF541Q9H0D2 AC004908.2-201ENST00000609090 574 ntBASIC3.39□□□□□ -1.87
ZNF541Q9H0D2 AC025048.6-202ENST00000627667 438 ntBASIC3.39□□□□□ -1.87
ZNF541Q9H0D2 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.38□□□□□ -1.87
ZNF541Q9H0D2 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
ZNF541Q9H0D2 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
ZNF541Q9H0D2 RNU6-223P-201ENST00000362830 107 ntBASIC3.38□□□□□ -1.87
ZNF541Q9H0D2 RNY3P10-201ENST00000384764 102 ntBASIC3.38□□□□□ -1.87
ZNF541Q9H0D2 AL139039.1-201ENST00000401900 692 ntBASIC3.38□□□□□ -1.87
ZNF541Q9H0D2 AL356057.3-201ENST00000402607 340 ntBASIC3.38□□□□□ -1.87
ZNF541Q9H0D2 AP000567.1-201ENST00000406413 156 ntBASIC3.38□□□□□ -1.87
ZNF541Q9H0D2 FCF1P10-201ENST00000407590 479 ntBASIC3.38□□□□□ -1.87
ZNF541Q9H0D2 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC3.38□□□□□ -1.87
ZNF541Q9H0D2 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.38□□□□□ -1.87
ZNF541Q9H0D2 AC129850.1-201ENST00000436203 508 ntBASIC3.38□□□□□ -1.87
ZNF541Q9H0D2 WASF1P1-201ENST00000447560 1131 ntBASIC3.38□□□□□ -1.87
ZNF541Q9H0D2 TPT1P14-201ENST00000448018 505 ntBASIC3.38□□□□□ -1.87
ZNF541Q9H0D2 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC3.38□□□□□ -1.87
ZNF541Q9H0D2 RN7SL330P-201ENST00000469709 307 ntBASIC3.38□□□□□ -1.87
ZNF541Q9H0D2 RPS15AP36-201ENST00000492022 382 ntBASIC3.38□□□□□ -1.87
ZNF541Q9H0D2 AC135721.1-201ENST00000497954 479 ntBASIC3.38□□□□□ -1.87
ZNF541Q9H0D2 AC093534.1-201ENST00000504977 132 ntBASIC3.38□□□□□ -1.87
ZNF541Q9H0D2 HMGB3P15-201ENST00000507326 574 ntBASIC3.38□□□□□ -1.87
ZNF541Q9H0D2 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC3.38□□□□□ -1.87
ZNF541Q9H0D2 RNU1-61P-201ENST00000516107 151 ntBASIC3.38□□□□□ -1.87
ZNF541Q9H0D2 SNORA64.4-201ENST00000516632 81 ntBASIC3.38□□□□□ -1.87
ZNF541Q9H0D2 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC3.38□□□□□ -1.87
ZNF541Q9H0D2 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC3.38□□□□□ -1.87
ZNF541Q9H0D2 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC3.38□□□□□ -1.87
ZNF541Q9H0D2 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC3.38□□□□□ -1.87
ZNF541Q9H0D2 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC3.38□□□□□ -1.87
ZNF541Q9H0D2 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC3.38□□□□□ -1.87
ZNF541Q9H0D2 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.38□□□□□ -1.87
ZNF541Q9H0D2 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC3.38□□□□□ -1.87
ZNF541Q9H0D2 AC103710.1-201ENST00000610003 901 ntBASIC3.38□□□□□ -1.87
ZNF541Q9H0D2 AC092608.2-201ENST00000624427 218 ntBASIC3.38□□□□□ -1.87
ZNF541Q9H0D2 MIR4275-201ENST00000636486 87 ntBASIC3.38□□□□□ -1.87
ZNF541Q9H0D2 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.38□□□□□ -1.87
ZNF541Q9H0D2 MTND5P33-201ENST00000571250 1450 ntBASIC3.38□□□□□ -1.87
ZNF541Q9H0D2 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
ZNF541Q9H0D2 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.37□□□□□ -1.87
ZNF541Q9H0D2 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC3.37□□□□□ -1.87
ZNF541Q9H0D2 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC3.37□□□□□ -1.87
ZNF541Q9H0D2 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.37□□□□□ -1.87
ZNF541Q9H0D2 RNU6-76P-201ENST00000384060 104 ntBASIC3.37□□□□□ -1.87
ZNF541Q9H0D2 MIR591-201ENST00000385290 95 ntBASIC3.37□□□□□ -1.87
ZNF541Q9H0D2 RPS20P2-201ENST00000402520 389 ntBASIC3.37□□□□□ -1.87
ZNF541Q9H0D2 MRPL42P2-201ENST00000403169 426 ntBASIC3.37□□□□□ -1.87
ZNF541Q9H0D2 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC3.37□□□□□ -1.87
ZNF541Q9H0D2 ARF4P2-201ENST00000430209 526 ntBASIC3.37□□□□□ -1.87
ZNF541Q9H0D2 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC3.37□□□□□ -1.87
ZNF541Q9H0D2 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC3.37□□□□□ -1.87
ZNF541Q9H0D2 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC3.37□□□□□ -1.87
ZNF541Q9H0D2 AC090774.1-201ENST00000435925 246 ntBASIC3.37□□□□□ -1.87
ZNF541Q9H0D2 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC3.37□□□□□ -1.87
ZNF541Q9H0D2 SNRPGP9-201ENST00000456025 225 ntBASIC3.37□□□□□ -1.87
ZNF541Q9H0D2 RPS29P21-201ENST00000496272 170 ntBASIC3.37□□□□□ -1.87
ZNF541Q9H0D2 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.37□□□□□ -1.87
ZNF541Q9H0D2 MTND5P13-201ENST00000513046 1079 ntBASIC3.37□□□□□ -1.87
ZNF541Q9H0D2 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC3.37□□□□□ -1.87
ZNF541Q9H0D2 AC117532.1-201ENST00000514638 323 ntBASIC3.37□□□□□ -1.87
ZNF541Q9H0D2 SNORA31.21-201ENST00000517180 77 ntBASIC3.37□□□□□ -1.87
ZNF541Q9H0D2 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC3.37□□□□□ -1.87
ZNF541Q9H0D2 AP003122.3-201ENST00000526316 255 ntBASIC3.37□□□□□ -1.87
ZNF541Q9H0D2 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC3.37□□□□□ -1.87
ZNF541Q9H0D2 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC3.37□□□□□ -1.87
ZNF541Q9H0D2 AL391156.1-201ENST00000554965 554 ntBASIC3.37□□□□□ -1.87
ZNF541Q9H0D2 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC3.37□□□□□ -1.87
ZNF541Q9H0D2 MIR548AB-201ENST00000584917 84 ntBASIC3.37□□□□□ -1.87
ZNF541Q9H0D2 AF038458.1-201ENST00000588406 262 ntBASIC3.37□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 92.7 ms