Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AC011131.1-201ENST00000521224 252 ntTSL 2 BASIC1.91□□□□□ -2.1
CCDC42Q96M95 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC1.91□□□□□ -2.1
CCDC42Q96M95 AL161729.4-201ENST00000604650 476 ntBASIC1.91□□□□□ -2.1
CCDC42Q96M95 AC012150.2-201ENST00000621300 544 ntBASIC1.91□□□□□ -2.1
CCDC42Q96M95 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC1.91□□□□□ -2.1
CCDC42Q96M95 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
CCDC42Q96M95 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
CCDC42Q96M95 RNU6-582P-201ENST00000362989 107 ntBASIC1.9□□□□□ -2.11
CCDC42Q96M95 SNORD56.4-201ENST00000363883 71 ntBASIC1.9□□□□□ -2.11
CCDC42Q96M95 RNA5SP88-201ENST00000365560 109 ntBASIC1.9□□□□□ -2.11
CCDC42Q96M95 MIR676-201ENST00000390702 67 ntBASIC1.9□□□□□ -2.11
CCDC42Q96M95 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
CCDC42Q96M95 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC1.9□□□□□ -2.11
CCDC42Q96M95 AC008173.1-201ENST00000418901 264 ntBASIC1.9□□□□□ -2.11
CCDC42Q96M95 AC018630.2-202ENST00000422992 927 ntBASIC1.9□□□□□ -2.11
CCDC42Q96M95 EIF4EP4-201ENST00000424916 578 ntBASIC1.9□□□□□ -2.11
CCDC42Q96M95 Z93242.1-201ENST00000427102 353 ntBASIC1.9□□□□□ -2.11
CCDC42Q96M95 Z82210.1-201ENST00000440037 231 ntBASIC1.9□□□□□ -2.11
CCDC42Q96M95 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC1.9□□□□□ -2.11
CCDC42Q96M95 AL049874.1-201ENST00000489560 388 ntBASIC1.9□□□□□ -2.11
CCDC42Q96M95 RPS29P20-201ENST00000489592 171 ntBASIC1.9□□□□□ -2.11
CCDC42Q96M95 AC105252.1-201ENST00000503089 286 ntBASIC1.9□□□□□ -2.11
CCDC42Q96M95 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC1.9□□□□□ -2.11
CCDC42Q96M95 AC138956.1-201ENST00000508187 504 ntTSL 3 BASIC1.9□□□□□ -2.11
CCDC42Q96M95 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC1.9□□□□□ -2.11
CCDC42Q96M95 AC006499.2-201ENST00000513470 337 ntBASIC1.9□□□□□ -2.11
CCDC42Q96M95 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC1.9□□□□□ -2.11
CCDC42Q96M95 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC1.9□□□□□ -2.11
CCDC42Q96M95 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC1.9□□□□□ -2.11
CCDC42Q96M95 AC008543.4-201ENST00000585694 442 ntTSL 2 BASIC1.9□□□□□ -2.11
CCDC42Q96M95 AC040174.2-201ENST00000602701 465 ntBASIC1.9□□□□□ -2.11
CCDC42Q96M95 DUXAP10-204ENST00000612052 616 ntBASIC1.9□□□□□ -2.11
CCDC42Q96M95 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
CCDC42Q96M95 ELF2P3-201ENST00000445099 1506 ntBASIC1.9□□□□□ -2.11
CCDC42Q96M95 DBF4P1-201ENST00000412976 1892 ntBASIC1.9□□□□□ -2.11
CCDC42Q96M95 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC1.89□□□□□ -2.11
CCDC42Q96M95 RNU6-1083P-201ENST00000384022 107 ntBASIC1.89□□□□□ -2.11
CCDC42Q96M95 RNU6-750P-201ENST00000390946 107 ntBASIC1.89□□□□□ -2.11
CCDC42Q96M95 AL079342.1-201ENST00000401460 267 ntBASIC1.89□□□□□ -2.11
CCDC42Q96M95 RNU6ATAC37P-201ENST00000408328 131 ntBASIC1.89□□□□□ -2.11
CCDC42Q96M95 AC023141.4-201ENST00000412031 328 ntBASIC1.89□□□□□ -2.11
CCDC42Q96M95 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC1.89□□□□□ -2.11
CCDC42Q96M95 RPS15AP5-201ENST00000436276 388 ntBASIC1.89□□□□□ -2.11
CCDC42Q96M95 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC1.89□□□□□ -2.11
CCDC42Q96M95 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC1.89□□□□□ -2.11
CCDC42Q96M95 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC1.89□□□□□ -2.11
CCDC42Q96M95 AC055731.1-201ENST00000474387 401 ntBASIC1.89□□□□□ -2.11
CCDC42Q96M95 AC068781.1-201ENST00000488231 618 ntBASIC1.89□□□□□ -2.11
CCDC42Q96M95 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC1.89□□□□□ -2.11
CCDC42Q96M95 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC1.89□□□□□ -2.11
CCDC42Q96M95 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC1.89□□□□□ -2.11
CCDC42Q96M95 AC133794.1-201ENST00000602731 914 ntBASIC1.89□□□□□ -2.11
CCDC42Q96M95 AC025165.5-201ENST00000602802 578 ntBASIC1.89□□□□□ -2.11
CCDC42Q96M95 AL445493.3-201ENST00000619568 477 ntBASIC1.89□□□□□ -2.11
CCDC42Q96M95 OR1S1-201ENST00000624470 978 ntBASIC1.89□□□□□ -2.11
CCDC42Q96M95 AL512506.2-201ENST00000624472 458 ntBASIC1.89□□□□□ -2.11
CCDC42Q96M95 AC106730.3-201ENST00000624568 641 ntBASIC1.89□□□□□ -2.11
CCDC42Q96M95 AC132825.7-201ENST00000638744 335 ntBASIC1.89□□□□□ -2.11
CCDC42Q96M95 OR4G2P-202ENST00000641004 1759 ntBASIC1.89□□□□□ -2.11
CCDC42Q96M95 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
CCDC42Q96M95 AC104454.1-201ENST00000421341 1401 ntBASIC1.89□□□□□ -2.11
CCDC42Q96M95 AC005832.2-201ENST00000538921 1430 ntBASIC1.89□□□□□ -2.11
CCDC42Q96M95 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC1.88□□□□□ -2.11
CCDC42Q96M95 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC1.88□□□□□ -2.11
CCDC42Q96M95 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
CCDC42Q96M95 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC1.88□□□□□ -2.11
CCDC42Q96M95 MIR449A-201ENST00000362113 91 ntBASIC1.88□□□□□ -2.11
CCDC42Q96M95 RNU6-234P-201ENST00000365229 104 ntBASIC1.88□□□□□ -2.11
CCDC42Q96M95 RNA5SP508-201ENST00000411327 119 ntBASIC1.88□□□□□ -2.11
CCDC42Q96M95 VN1R51P-201ENST00000411675 945 ntBASIC1.88□□□□□ -2.11
CCDC42Q96M95 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC1.88□□□□□ -2.11
CCDC42Q96M95 AC003989.2-201ENST00000440224 169 ntBASIC1.88□□□□□ -2.11
CCDC42Q96M95 AC016691.1-201ENST00000441321 413 ntBASIC1.88□□□□□ -2.11
CCDC42Q96M95 AC124916.1-201ENST00000444020 547 ntBASIC1.88□□□□□ -2.11
CCDC42Q96M95 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC1.88□□□□□ -2.11
CCDC42Q96M95 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC1.88□□□□□ -2.11
CCDC42Q96M95 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC1.88□□□□□ -2.11
CCDC42Q96M95 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC1.88□□□□□ -2.11
CCDC42Q96M95 RPS29P11-201ENST00000496507 171 ntBASIC1.88□□□□□ -2.11
CCDC42Q96M95 PDC-202ENST00000497198 1174 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
CCDC42Q96M95 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC1.88□□□□□ -2.11
CCDC42Q96M95 AC022447.3-201ENST00000506865 495 ntBASIC1.88□□□□□ -2.11
CCDC42Q96M95 AC069306.1-201ENST00000507006 843 ntBASIC1.88□□□□□ -2.11
CCDC42Q96M95 AC093281.2-201ENST00000510153 597 ntBASIC1.88□□□□□ -2.11
CCDC42Q96M95 RNU6-885P-201ENST00000516607 104 ntBASIC1.88□□□□□ -2.11
CCDC42Q96M95 VBP1-203ENST00000535916 944 ntTSL 2 BASIC1.88□□□□□ -2.11
CCDC42Q96M95 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC1.88□□□□□ -2.11
CCDC42Q96M95 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC1.88□□□□□ -2.11
CCDC42Q96M95 AC022662.1-201ENST00000580252 331 ntBASIC1.88□□□□□ -2.11
CCDC42Q96M95 MIR3199-1-201ENST00000582434 88 ntBASIC1.88□□□□□ -2.11
CCDC42Q96M95 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
CCDC42Q96M95 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC1.88□□□□□ -2.11
CCDC42Q96M95 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC1.88□□□□□ -2.11
CCDC42Q96M95 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC1.88□□□□□ -2.11
CCDC42Q96M95 AC004908.2-201ENST00000609090 574 ntBASIC1.88□□□□□ -2.11
CCDC42Q96M95 AC073592.7-201ENST00000623659 507 ntBASIC1.88□□□□□ -2.11
CCDC42Q96M95 MIR7157-201ENST00000635801 60 ntBASIC1.88□□□□□ -2.11
CCDC42Q96M95 MTND5P29-201ENST00000458676 1807 ntBASIC1.88□□□□□ -2.11
CCDC42Q96M95 AC092881.1-201ENST00000638218 2733 ntBASIC1.88□□□□□ -2.11
CCDC42Q96M95 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC1.87□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 87.9 ms