Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
NPAS3Q8IXF0 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
NPAS3Q8IXF0 RNU6-653P-201ENST00000363074 106 ntBASIC5.33□□□□□ -1.56
NPAS3Q8IXF0 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
NPAS3Q8IXF0 Y_RNA.563-201ENST00000384707 108 ntBASIC5.33□□□□□ -1.56
NPAS3Q8IXF0 RNU6-239P-201ENST00000390990 99 ntBASIC5.33□□□□□ -1.56
NPAS3Q8IXF0 AL590704.1-201ENST00000402856 794 ntBASIC5.33□□□□□ -1.56
NPAS3Q8IXF0 AL390729.2-201ENST00000416137 156 ntBASIC5.33□□□□□ -1.56
NPAS3Q8IXF0 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC5.33□□□□□ -1.56
NPAS3Q8IXF0 AC011742.1-201ENST00000431448 434 ntBASIC5.33□□□□□ -1.56
NPAS3Q8IXF0 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC5.33□□□□□ -1.56
NPAS3Q8IXF0 NDUFB4P8-201ENST00000435351 367 ntBASIC5.33□□□□□ -1.56
NPAS3Q8IXF0 MRPS10P1-201ENST00000448483 130 ntBASIC5.33□□□□□ -1.56
NPAS3Q8IXF0 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC5.33□□□□□ -1.56
NPAS3Q8IXF0 AC005840.1-201ENST00000498412 377 ntBASIC5.33□□□□□ -1.56
NPAS3Q8IXF0 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
NPAS3Q8IXF0 AC133555.2-201ENST00000550213 292 ntBASIC5.33□□□□□ -1.56
NPAS3Q8IXF0 AC108738.1-201ENST00000603703 237 ntBASIC5.33□□□□□ -1.56
NPAS3Q8IXF0 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC5.33□□□□□ -1.56
NPAS3Q8IXF0 SNHG22-203ENST00000617833 660 ntBASIC5.33□□□□□ -1.56
NPAS3Q8IXF0 AC110801.1-201ENST00000623590 212 ntBASIC5.33□□□□□ -1.56
NPAS3Q8IXF0 MIR7641-1-201ENST00000627518 61 ntBASIC5.33□□□□□ -1.56
NPAS3Q8IXF0 U4.7-201ENST00000638126 106 ntBASIC5.33□□□□□ -1.56
NPAS3Q8IXF0 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC5.33□□□□□ -1.56
NPAS3Q8IXF0 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
NPAS3Q8IXF0 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC5.33□□□□□ -1.56
NPAS3Q8IXF0 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC5.33□□□□□ -1.56
NPAS3Q8IXF0 MFSD8-216ENST00000641147 4009 ntBASIC5.33□□□□□ -1.56
NPAS3Q8IXF0 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
NPAS3Q8IXF0 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
NPAS3Q8IXF0 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC5.33□□□□□ -1.56
NPAS3Q8IXF0 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
NPAS3Q8IXF0 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC5.33□□□□□ -1.56
NPAS3Q8IXF0 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
NPAS3Q8IXF0 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
NPAS3Q8IXF0 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
NPAS3Q8IXF0 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
NPAS3Q8IXF0 ADAM24P-201ENST00000398655 2101 ntBASIC5.32□□□□□ -1.56
NPAS3Q8IXF0 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC5.32□□□□□ -1.56
NPAS3Q8IXF0 AC110491.1-201ENST00000562191 2010 ntBASIC5.32□□□□□ -1.56
NPAS3Q8IXF0 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
NPAS3Q8IXF0 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
NPAS3Q8IXF0 Y_RNA.7-201ENST00000362352 102 ntBASIC5.32□□□□□ -1.56
NPAS3Q8IXF0 RNU6-989P-201ENST00000362756 107 ntBASIC5.32□□□□□ -1.56
NPAS3Q8IXF0 RNU6-371P-201ENST00000364283 108 ntBASIC5.32□□□□□ -1.56
NPAS3Q8IXF0 Y_RNA.388-201ENST00000383919 113 ntBASIC5.32□□□□□ -1.56
NPAS3Q8IXF0 RNU1-74P-201ENST00000384108 171 ntBASIC5.32□□□□□ -1.56
NPAS3Q8IXF0 RN7SKP284-201ENST00000411002 343 ntBASIC5.32□□□□□ -1.56
NPAS3Q8IXF0 RPL23AP26-201ENST00000412728 464 ntBASIC5.32□□□□□ -1.56
NPAS3Q8IXF0 RPS23P10-201ENST00000416185 486 ntBASIC5.32□□□□□ -1.56
NPAS3Q8IXF0 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC5.32□□□□□ -1.56
NPAS3Q8IXF0 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC5.32□□□□□ -1.56
NPAS3Q8IXF0 GAPDHP27-201ENST00000447427 1020 ntBASIC5.32□□□□□ -1.56
NPAS3Q8IXF0 NOP56P2-201ENST00000447491 769 ntBASIC5.32□□□□□ -1.56
NPAS3Q8IXF0 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC5.32□□□□□ -1.56
NPAS3Q8IXF0 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC5.32□□□□□ -1.56
NPAS3Q8IXF0 AC022795.1-201ENST00000473808 480 ntBASIC5.32□□□□□ -1.56
NPAS3Q8IXF0 AC020890.1-201ENST00000491837 504 ntBASIC5.32□□□□□ -1.56
NPAS3Q8IXF0 RNU6-589P-201ENST00000516485 107 ntBASIC5.32□□□□□ -1.56
NPAS3Q8IXF0 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC5.32□□□□□ -1.56
NPAS3Q8IXF0 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC5.32□□□□□ -1.56
NPAS3Q8IXF0 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC5.32□□□□□ -1.56
NPAS3Q8IXF0 MIR4504-201ENST00000577413 92 ntBASIC5.32□□□□□ -1.56
NPAS3Q8IXF0 MIR5692C2-201ENST00000577959 77 ntBASIC5.32□□□□□ -1.56
NPAS3Q8IXF0 VN1R84P-201ENST00000593697 235 ntBASIC5.32□□□□□ -1.56
NPAS3Q8IXF0 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC5.32□□□□□ -1.56
NPAS3Q8IXF0 AP005432.2-201ENST00000608162 586 ntBASIC5.32□□□□□ -1.56
NPAS3Q8IXF0 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC5.32□□□□□ -1.56
NPAS3Q8IXF0 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC5.32□□□□□ -1.56
NPAS3Q8IXF0 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
NPAS3Q8IXF0 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
NPAS3Q8IXF0 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
NPAS3Q8IXF0 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
NPAS3Q8IXF0 GVINP1-202ENST00000531871 7271 ntBASIC5.32□□□□□ -1.56
NPAS3Q8IXF0 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC5.32□□□□□ -1.56
NPAS3Q8IXF0 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
NPAS3Q8IXF0 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC5.32□□□□□ -1.56
NPAS3Q8IXF0 SLC2A3P1-201ENST00000519666 1451 ntBASIC5.32□□□□□ -1.56
NPAS3Q8IXF0 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
NPAS3Q8IXF0 SDAD1P1-202ENST00000524156 2051 ntBASIC5.32□□□□□ -1.56
NPAS3Q8IXF0 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
NPAS3Q8IXF0 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC5.31□□□□□ -1.56
NPAS3Q8IXF0 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC5.31□□□□□ -1.56
NPAS3Q8IXF0 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
NPAS3Q8IXF0 LINC01204-202ENST00000435394 2214 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
NPAS3Q8IXF0 AC109446.4-201ENST00000623235 2755 ntBASIC5.31□□□□□ -1.56
NPAS3Q8IXF0 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
NPAS3Q8IXF0 RNU6-1301P-201ENST00000362724 104 ntBASIC5.31□□□□□ -1.56
NPAS3Q8IXF0 RNU6-288P-201ENST00000363690 104 ntBASIC5.31□□□□□ -1.56
NPAS3Q8IXF0 Y_RNA.446-201ENST00000384178 104 ntBASIC5.31□□□□□ -1.56
NPAS3Q8IXF0 MIR589-201ENST00000385238 99 ntBASIC5.31□□□□□ -1.56
NPAS3Q8IXF0 RPL7AP73-201ENST00000413490 353 ntBASIC5.31□□□□□ -1.56
NPAS3Q8IXF0 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC5.31□□□□□ -1.56
NPAS3Q8IXF0 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
NPAS3Q8IXF0 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC5.31□□□□□ -1.56
NPAS3Q8IXF0 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC5.31□□□□□ -1.56
NPAS3Q8IXF0 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
NPAS3Q8IXF0 RPL37P6-201ENST00000460682 294 ntBASIC5.31□□□□□ -1.56
NPAS3Q8IXF0 RN7SL189P-201ENST00000468631 289 ntBASIC5.31□□□□□ -1.56
NPAS3Q8IXF0 COX7A2P2-201ENST00000505291 250 ntBASIC5.31□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 99.4 ms