Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC092925.1-201ENST00000470739 493 ntTSL 3 BASIC1.9□□□□□ -2.1
CCDC88AQ3V6T2 AC006390.1-201ENST00000508068 283 ntBASIC1.9□□□□□ -2.1
CCDC88AQ3V6T2 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC1.9□□□□□ -2.1
CCDC88AQ3V6T2 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC1.9□□□□□ -2.1
CCDC88AQ3V6T2 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.9□□□□□ -2.1
CCDC88AQ3V6T2 AC087272.1-201ENST00000523624 533 ntBASIC1.9□□□□□ -2.1
CCDC88AQ3V6T2 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC1.9□□□□□ -2.1
CCDC88AQ3V6T2 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC1.9□□□□□ -2.1
CCDC88AQ3V6T2 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.9□□□□□ -2.1
CCDC88AQ3V6T2 AC233266.2-201ENST00000567067 528 ntBASIC1.9□□□□□ -2.1
CCDC88AQ3V6T2 OR4K8P-201ENST00000578842 1048 ntBASIC1.9□□□□□ -2.1
CCDC88AQ3V6T2 AC068880.5-201ENST00000624331 290 ntBASIC1.9□□□□□ -2.1
CCDC88AQ3V6T2 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC1.9□□□□□ -2.11
CCDC88AQ3V6T2 HGF-207ENST00000453018 721 ntTSL 3 BASIC1.9□□□□□ -2.11
CCDC88AQ3V6T2 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC1.9□□□□□ -2.11
CCDC88AQ3V6T2 CCNB1IP1P3-201ENST00000454702 829 ntBASIC1.9□□□□□ -2.11
CCDC88AQ3V6T2 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC1.9□□□□□ -2.11
CCDC88AQ3V6T2 AC026347.1-201ENST00000463255 474 ntTSL 3 BASIC1.9□□□□□ -2.11
CCDC88AQ3V6T2 AP001804.3-201ENST00000525146 880 ntBASIC1.9□□□□□ -2.11
CCDC88AQ3V6T2 AC011604.1-201ENST00000545978 196 ntBASIC1.9□□□□□ -2.11
CCDC88AQ3V6T2 SEPT7P9-203ENST00000604116 343 ntBASIC1.9□□□□□ -2.11
CCDC88AQ3V6T2 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC1.9□□□□□ -2.11
CCDC88AQ3V6T2 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC1.89□□□□□ -2.11
CCDC88AQ3V6T2 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC1.89□□□□□ -2.11
CCDC88AQ3V6T2 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
CCDC88AQ3V6T2 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.89□□□□□ -2.11
CCDC88AQ3V6T2 AC018630.2-202ENST00000422992 927 ntBASIC1.89□□□□□ -2.11
CCDC88AQ3V6T2 AC096751.1-202ENST00000502691 1067 ntBASIC1.89□□□□□ -2.11
CCDC88AQ3V6T2 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC1.89□□□□□ -2.11
CCDC88AQ3V6T2 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.89□□□□□ -2.11
CCDC88AQ3V6T2 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC1.89□□□□□ -2.11
CCDC88AQ3V6T2 AL161629.2-201ENST00000615347 275 ntBASIC1.89□□□□□ -2.11
CCDC88AQ3V6T2 ZNF209P-201ENST00000593450 2304 ntBASIC1.89□□□□□ -2.11
CCDC88AQ3V6T2 OR5T1-202ENST00000641665 1471 ntAPPRIS P1 BASIC1.89□□□□□ -2.11
CCDC88AQ3V6T2 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
CCDC88AQ3V6T2 RNU6-1-201ENST00000383898 107 ntBASIC1.88□□□□□ -2.11
CCDC88AQ3V6T2 RNU6-42P-201ENST00000384165 107 ntBASIC1.88□□□□□ -2.11
CCDC88AQ3V6T2 RNU6-36P-201ENST00000384172 107 ntBASIC1.88□□□□□ -2.11
CCDC88AQ3V6T2 RNU6-4P-201ENST00000384205 107 ntBASIC1.88□□□□□ -2.11
CCDC88AQ3V6T2 RNU6-5P-201ENST00000384238 107 ntBASIC1.88□□□□□ -2.11
CCDC88AQ3V6T2 RNU6-3P-201ENST00000384314 107 ntBASIC1.88□□□□□ -2.11
CCDC88AQ3V6T2 RNU6-2-201ENST00000384627 107 ntBASIC1.88□□□□□ -2.11
CCDC88AQ3V6T2 RNU6-9-201ENST00000384776 107 ntBASIC1.88□□□□□ -2.11
CCDC88AQ3V6T2 RNU6-33P-201ENST00000384793 107 ntBASIC1.88□□□□□ -2.11
CCDC88AQ3V6T2 MIR767-201ENST00000390228 109 ntBASIC1.88□□□□□ -2.11
CCDC88AQ3V6T2 AL589655.1-201ENST00000405398 482 ntBASIC1.88□□□□□ -2.11
CCDC88AQ3V6T2 RNU6-193P-201ENST00000410977 107 ntBASIC1.88□□□□□ -2.11
CCDC88AQ3V6T2 TRIM60P5Y-201ENST00000413946 574 ntBASIC1.88□□□□□ -2.11
CCDC88AQ3V6T2 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC1.88□□□□□ -2.11
CCDC88AQ3V6T2 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC1.88□□□□□ -2.11
CCDC88AQ3V6T2 RAB11AP1-201ENST00000442978 646 ntBASIC1.88□□□□□ -2.11
CCDC88AQ3V6T2 RPS27P23-201ENST00000487608 251 ntBASIC1.88□□□□□ -2.11
CCDC88AQ3V6T2 SNORA70.16-201ENST00000516390 95 ntBASIC1.88□□□□□ -2.11
CCDC88AQ3V6T2 RNU6-551P-201ENST00000516661 103 ntBASIC1.88□□□□□ -2.11
CCDC88AQ3V6T2 ZNF705CP-201ENST00000530515 889 ntBASIC1.88□□□□□ -2.11
CCDC88AQ3V6T2 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC1.88□□□□□ -2.11
CCDC88AQ3V6T2 AC009127.3-201ENST00000570531 403 ntBASIC1.88□□□□□ -2.11
CCDC88AQ3V6T2 MIR4504-201ENST00000577413 92 ntBASIC1.88□□□□□ -2.11
CCDC88AQ3V6T2 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC1.88□□□□□ -2.11
CCDC88AQ3V6T2 RNU6-6P-201ENST00000606623 107 ntBASIC1.88□□□□□ -2.11
CCDC88AQ3V6T2 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC1.88□□□□□ -2.11
CCDC88AQ3V6T2 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC1.88□□□□□ -2.11
CCDC88AQ3V6T2 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.88□□□□□ -2.11
CCDC88AQ3V6T2 SNORD48-201ENST00000364953 64 ntBASIC1.88□□□□□ -2.11
CCDC88AQ3V6T2 SNORD51.1-201ENST00000365405 77 ntBASIC1.88□□□□□ -2.11
CCDC88AQ3V6T2 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC1.88□□□□□ -2.11
CCDC88AQ3V6T2 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC1.88□□□□□ -2.11
CCDC88AQ3V6T2 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC1.88□□□□□ -2.11
CCDC88AQ3V6T2 UBE2V1P6-201ENST00000430840 422 ntBASIC1.88□□□□□ -2.11
CCDC88AQ3V6T2 AL365400.1-201ENST00000431854 640 ntBASIC1.88□□□□□ -2.11
CCDC88AQ3V6T2 NAP1L1P3-201ENST00000462291 880 ntBASIC1.88□□□□□ -2.11
CCDC88AQ3V6T2 OR52A4P-202ENST00000481634 799 ntBASIC1.88□□□□□ -2.11
CCDC88AQ3V6T2 NCOR1P1-202ENST00000486162 291 ntBASIC1.88□□□□□ -2.11
CCDC88AQ3V6T2 LINC02270-201ENST00000505386 610 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
CCDC88AQ3V6T2 CDC42P4-201ENST00000510507 563 ntBASIC1.88□□□□□ -2.11
CCDC88AQ3V6T2 AC113155.1-201ENST00000511141 769 ntBASIC1.88□□□□□ -2.11
CCDC88AQ3V6T2 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC1.88□□□□□ -2.11
CCDC88AQ3V6T2 RNU6-1223P-201ENST00000517124 104 ntBASIC1.88□□□□□ -2.11
CCDC88AQ3V6T2 AP000942.2-201ENST00000526310 628 ntTSL 3 BASIC1.88□□□□□ -2.11
CCDC88AQ3V6T2 AL669831.4-202ENST00000590817 238 ntBASIC1.88□□□□□ -2.11
CCDC88AQ3V6T2 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC1.88□□□□□ -2.11
CCDC88AQ3V6T2 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC1.88□□□□□ -2.11
CCDC88AQ3V6T2 AC116618.1-201ENST00000634617 774 ntBASIC1.88□□□□□ -2.11
CCDC88AQ3V6T2 MIR6767-201ENST00000637302 66 ntBASIC1.88□□□□□ -2.11
CCDC88AQ3V6T2 OR5H6-202ENST00000641416 1032 ntAPPRIS P1 BASIC1.88□□□□□ -2.11
CCDC88AQ3V6T2 OR4G11P-202ENST00000642116 1414 ntBASIC1.87□□□□□ -2.11
CCDC88AQ3V6T2 AC008669.1-201ENST00000565823 2178 ntBASIC1.87□□□□□ -2.11
CCDC88AQ3V6T2 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC1.87□□□□□ -2.11
CCDC88AQ3V6T2 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
CCDC88AQ3V6T2 NF1-214ENST00000490416 1329 ntTSL 3 BASIC1.87□□□□□ -2.11
CCDC88AQ3V6T2 RNU6-543P-201ENST00000362576 108 ntBASIC1.87□□□□□ -2.11
CCDC88AQ3V6T2 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC1.87□□□□□ -2.11
CCDC88AQ3V6T2 RNU6-342P-201ENST00000384521 104 ntBASIC1.87□□□□□ -2.11
CCDC88AQ3V6T2 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC1.87□□□□□ -2.11
CCDC88AQ3V6T2 BNIP3P2-201ENST00000441221 577 ntBASIC1.87□□□□□ -2.11
CCDC88AQ3V6T2 OR6K5P-201ENST00000447050 945 ntBASIC1.87□□□□□ -2.11
CCDC88AQ3V6T2 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC1.87□□□□□ -2.11
CCDC88AQ3V6T2 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC1.87□□□□□ -2.11
CCDC88AQ3V6T2 RPL7P18-201ENST00000478965 734 ntBASIC1.87□□□□□ -2.11
CCDC88AQ3V6T2 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 104.6 ms