Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 SSXP1-201ENST00000453640 473 ntBASIC2.53□□□□□ -2
COL4A4P53420 SNRPGP9-201ENST00000456025 225 ntBASIC2.53□□□□□ -2
COL4A4P53420 MTND1P11-201ENST00000456661 876 ntBASIC2.53□□□□□ -2
COL4A4P53420 AC116337.2-201ENST00000477662 156 ntBASIC2.53□□□□□ -2
COL4A4P53420 AC116347.2-201ENST00000514912 523 ntBASIC2.53□□□□□ -2
COL4A4P53420 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC2.53□□□□□ -2
COL4A4P53420 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC2.53□□□□□ -2
COL4A4P53420 CBX3P5-201ENST00000552017 521 ntBASIC2.53□□□□□ -2
COL4A4P53420 ZNF519P2-201ENST00000557032 169 ntBASIC2.53□□□□□ -2
COL4A4P53420 TPRKBP2-201ENST00000565969 475 ntBASIC2.53□□□□□ -2
COL4A4P53420 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC2.53□□□□□ -2
COL4A4P53420 AC092954.2-201ENST00000609103 430 ntBASIC2.53□□□□□ -2
COL4A4P53420 AC090517.2-201ENST00000614966 680 ntBASIC2.53□□□□□ -2
COL4A4P53420 AC004009.2-201ENST00000623016 728 ntBASIC2.53□□□□□ -2
COL4A4P53420 AC099654.5-201ENST00000636479 350 ntBASIC2.53□□□□□ -2
COL4A4P53420 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.53□□□□□ -2
COL4A4P53420 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
COL4A4P53420 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.53□□□□□ -2
COL4A4P53420 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC2.53□□□□□ -2
COL4A4P53420 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC2.53□□□□□ -2
COL4A4P53420 RNY4P24-201ENST00000362735 96 ntBASIC2.53□□□□□ -2
COL4A4P53420 Y_RNA.116-201ENST00000363292 103 ntBASIC2.53□□□□□ -2
COL4A4P53420 SNORA75-201ENST00000384158 137 ntBASIC2.53□□□□□ -2
COL4A4P53420 MIR181A1-201ENST00000385026 110 ntBASIC2.53□□□□□ -2
COL4A4P53420 RN7SKP140-201ENST00000411196 284 ntBASIC2.53□□□□□ -2
COL4A4P53420 CYP3A43-205ENST00000415413 990 ntTSL 5 BASIC2.53□□□□□ -2
COL4A4P53420 PNRC2P1-201ENST00000423940 420 ntBASIC2.53□□□□□ -2
COL4A4P53420 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC2.53□□□□□ -2
COL4A4P53420 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC2.53□□□□□ -2
COL4A4P53420 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC2.53□□□□□ -2
COL4A4P53420 MTND3P21-201ENST00000433774 331 ntBASIC2.53□□□□□ -2
COL4A4P53420 AC018634.1-201ENST00000437554 401 ntBASIC2.53□□□□□ -2
COL4A4P53420 AL050341.1-201ENST00000447743 313 ntBASIC2.53□□□□□ -2
COL4A4P53420 PAXBP1P1-201ENST00000449315 447 ntBASIC2.53□□□□□ -2
COL4A4P53420 AC011753.1-201ENST00000451001 220 ntBASIC2.53□□□□□ -2
COL4A4P53420 AL035407.2-201ENST00000454090 378 ntBASIC2.53□□□□□ -2
COL4A4P53420 RNA5SP269-201ENST00000459032 137 ntBASIC2.53□□□□□ -2
COL4A4P53420 RPL7P18-201ENST00000478965 734 ntBASIC2.53□□□□□ -2
COL4A4P53420 NCOR1P1-202ENST00000486162 291 ntBASIC2.53□□□□□ -2
COL4A4P53420 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC2.53□□□□□ -2
COL4A4P53420 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC2.53□□□□□ -2
COL4A4P53420 FABP5P5-201ENST00000515537 406 ntBASIC2.53□□□□□ -2
COL4A4P53420 RNU6-718P-201ENST00000516166 105 ntBASIC2.53□□□□□ -2
COL4A4P53420 Y_RNA.670-201ENST00000516255 105 ntBASIC2.53□□□□□ -2
COL4A4P53420 snoZ278.1-201ENST00000517059 112 ntBASIC2.53□□□□□ -2
COL4A4P53420 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC2.53□□□□□ -2
COL4A4P53420 AC007536.1-201ENST00000533382 349 ntBASIC2.53□□□□□ -2
COL4A4P53420 AC023796.1-201ENST00000536131 670 ntTSL 3 BASIC2.53□□□□□ -2
COL4A4P53420 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC2.53□□□□□ -2
COL4A4P53420 AC004217.3-201ENST00000551552 878 ntBASIC2.53□□□□□ -2
COL4A4P53420 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC2.53□□□□□ -2
COL4A4P53420 MIR4528-201ENST00000577763 90 ntBASIC2.53□□□□□ -2
COL4A4P53420 NF1P5-201ENST00000588287 448 ntBASIC2.53□□□□□ -2
COL4A4P53420 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC2.53□□□□□ -2
COL4A4P53420 AC018714.1-201ENST00000605028 208 ntBASIC2.53□□□□□ -2
COL4A4P53420 AC067747.1-201ENST00000608026 250 ntBASIC2.53□□□□□ -2
COL4A4P53420 AP001521.1-201ENST00000609150 300 ntBASIC2.53□□□□□ -2
COL4A4P53420 AL592494.3-201ENST00000609485 464 ntBASIC2.53□□□□□ -2
COL4A4P53420 TP73-AS1.1-201ENST00000611447 161 ntBASIC2.53□□□□□ -2
COL4A4P53420 AP001005.3-201ENST00000622049 129 ntBASIC2.53□□□□□ -2
COL4A4P53420 MTND4P12-201ENST00000498999 1377 ntBASIC2.53□□□□□ -2
COL4A4P53420 AC097714.1-201ENST00000511272 1647 ntBASIC2.52□□□□□ -2.01
COL4A4P53420 AC092326.2-201ENST00000624772 1561 ntBASIC2.52□□□□□ -2.01
COL4A4P53420 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC2.52□□□□□ -2.01
COL4A4P53420 AL157700.1-201ENST00000561973 1432 ntBASIC2.52□□□□□ -2.01
COL4A4P53420 RNU6-500P-201ENST00000362349 107 ntBASIC2.52□□□□□ -2.01
COL4A4P53420 RNU6-181P-201ENST00000363225 107 ntBASIC2.52□□□□□ -2.01
COL4A4P53420 SNORA72.1-201ENST00000363485 129 ntBASIC2.52□□□□□ -2.01
COL4A4P53420 RNU4-76P-201ENST00000364509 141 ntBASIC2.52□□□□□ -2.01
COL4A4P53420 RNU1-91P-201ENST00000364746 163 ntBASIC2.52□□□□□ -2.01
COL4A4P53420 HMGB1P10-201ENST00000395823 563 ntBASIC2.52□□□□□ -2.01
COL4A4P53420 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
COL4A4P53420 RN7SKP32-201ENST00000410167 303 ntBASIC2.52□□□□□ -2.01
COL4A4P53420 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC2.52□□□□□ -2.01
COL4A4P53420 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC2.52□□□□□ -2.01
COL4A4P53420 MTATP6P27-201ENST00000416987 621 ntBASIC2.52□□□□□ -2.01
COL4A4P53420 PTP4A1P1-201ENST00000420539 515 ntBASIC2.52□□□□□ -2.01
COL4A4P53420 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC2.52□□□□□ -2.01
COL4A4P53420 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC2.52□□□□□ -2.01
COL4A4P53420 USP9YP18-201ENST00000425912 695 ntBASIC2.52□□□□□ -2.01
COL4A4P53420 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC2.52□□□□□ -2.01
COL4A4P53420 CACYBPP1-201ENST00000438592 684 ntBASIC2.52□□□□□ -2.01
COL4A4P53420 MTCO3P18-201ENST00000440206 761 ntBASIC2.52□□□□□ -2.01
COL4A4P53420 MTATP6P30-201ENST00000443540 664 ntBASIC2.52□□□□□ -2.01
COL4A4P53420 RPL7P52-201ENST00000449200 742 ntBASIC2.52□□□□□ -2.01
COL4A4P53420 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC2.52□□□□□ -2.01
COL4A4P53420 CDC42P1-201ENST00000456658 548 ntBASIC2.52□□□□□ -2.01
COL4A4P53420 AC096751.1-202ENST00000502691 1067 ntBASIC2.52□□□□□ -2.01
COL4A4P53420 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
COL4A4P53420 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
COL4A4P53420 AL442663.2-201ENST00000554385 511 ntBASIC2.52□□□□□ -2.01
COL4A4P53420 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC2.52□□□□□ -2.01
COL4A4P53420 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC2.52□□□□□ -2.01
COL4A4P53420 AC023043.2-201ENST00000589678 1026 ntBASIC2.52□□□□□ -2.01
COL4A4P53420 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC2.52□□□□□ -2.01
COL4A4P53420 AL022154.1-201ENST00000604698 785 ntBASIC2.52□□□□□ -2.01
COL4A4P53420 AL390208.1-201ENST00000605885 644 ntBASIC2.52□□□□□ -2.01
COL4A4P53420 AC064836.2-201ENST00000609491 462 ntBASIC2.52□□□□□ -2.01
COL4A4P53420 AC104237.2-201ENST00000612456 443 ntBASIC2.52□□□□□ -2.01
COL4A4P53420 AC007742.2-201ENST00000618226 398 ntBASIC2.52□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 111.6 ms