Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AL360271.2-201ENST00000447710 161 ntBASIC4.84□□□□□ -1.63
LIG3P49916 AC108860.1-201ENST00000484521 383 ntBASIC4.84□□□□□ -1.63
LIG3P49916 AC110792.1-201ENST00000491826 472 ntBASIC4.84□□□□□ -1.63
LIG3P49916 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC4.84□□□□□ -1.63
LIG3P49916 PPBPP1-201ENST00000510807 373 ntBASIC4.84□□□□□ -1.63
LIG3P49916 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC4.84□□□□□ -1.63
LIG3P49916 AC092436.3-201ENST00000511788 257 ntBASIC4.84□□□□□ -1.63
LIG3P49916 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC4.84□□□□□ -1.63
LIG3P49916 RNU6-470P-201ENST00000515954 104 ntBASIC4.84□□□□□ -1.63
LIG3P49916 RN7SKP276-201ENST00000516242 268 ntBASIC4.84□□□□□ -1.63
LIG3P49916 Y_RNA.719-201ENST00000517156 106 ntBASIC4.84□□□□□ -1.63
LIG3P49916 MAL2-201ENST00000522112 573 ntTSL 4 BASIC4.84□□□□□ -1.63
LIG3P49916 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
LIG3P49916 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC4.84□□□□□ -1.63
LIG3P49916 AC069240.1-201ENST00000548774 375 ntBASIC4.84□□□□□ -1.63
LIG3P49916 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC4.84□□□□□ -1.63
LIG3P49916 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC4.84□□□□□ -1.63
LIG3P49916 FAM60BP-201ENST00000578364 658 ntBASIC4.84□□□□□ -1.63
LIG3P49916 SNORA74C-1-201ENST00000580726 201 ntBASIC4.84□□□□□ -1.63
LIG3P49916 MIR4270-201ENST00000581799 70 ntBASIC4.84□□□□□ -1.63
LIG3P49916 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC4.84□□□□□ -1.63
LIG3P49916 AL121932.1-201ENST00000605542 214 ntBASIC4.84□□□□□ -1.63
LIG3P49916 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC4.84□□□□□ -1.63
LIG3P49916 AC107294.1-201ENST00000609524 467 ntBASIC4.84□□□□□ -1.63
LIG3P49916 FAM27B-201ENST00000610601 213 ntBASIC4.84□□□□□ -1.63
LIG3P49916 AC006157.1-201ENST00000611750 366 ntBASIC4.84□□□□□ -1.63
LIG3P49916 AL031601.2-202ENST00000622650 282 ntBASIC4.84□□□□□ -1.63
LIG3P49916 AC067931.1-201ENST00000624190 671 ntBASIC4.84□□□□□ -1.63
LIG3P49916 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
LIG3P49916 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
LIG3P49916 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC4.84□□□□□ -1.64
LIG3P49916 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.64
LIG3P49916 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC4.83□□□□□ -1.64
LIG3P49916 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC4.83□□□□□ -1.64
LIG3P49916 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC4.83□□□□□ -1.64
LIG3P49916 UBE2L2-201ENST00000254302 429 ntBASIC4.83□□□□□ -1.64
LIG3P49916 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
LIG3P49916 RNA5SP513-201ENST00000364648 118 ntBASIC4.83□□□□□ -1.64
LIG3P49916 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
LIG3P49916 MIR578-201ENST00000384828 96 ntBASIC4.83□□□□□ -1.64
LIG3P49916 RNU4-6P-201ENST00000410804 122 ntBASIC4.83□□□□□ -1.64
LIG3P49916 RNA5SP39-201ENST00000411245 120 ntBASIC4.83□□□□□ -1.64
LIG3P49916 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC4.83□□□□□ -1.64
LIG3P49916 AC097713.2-201ENST00000430199 356 ntBASIC4.83□□□□□ -1.64
LIG3P49916 USP9YP30-201ENST00000430729 455 ntBASIC4.83□□□□□ -1.64
LIG3P49916 AL353748.1-201ENST00000440753 474 ntBASIC4.83□□□□□ -1.64
LIG3P49916 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC4.83□□□□□ -1.64
LIG3P49916 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC4.83□□□□□ -1.64
LIG3P49916 RPS5P7-201ENST00000456664 608 ntBASIC4.83□□□□□ -1.64
LIG3P49916 SCARNA10-201ENST00000459255 330 ntBASIC4.83□□□□□ -1.64
LIG3P49916 AC087588.1-201ENST00000462203 316 ntBASIC4.83□□□□□ -1.64
LIG3P49916 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC4.83□□□□□ -1.64
LIG3P49916 MTND3P25-201ENST00000509243 135 ntBASIC4.83□□□□□ -1.64
LIG3P49916 VWA8P1-201ENST00000510889 176 ntBASIC4.83□□□□□ -1.64
LIG3P49916 APOOP4-201ENST00000513530 597 ntBASIC4.83□□□□□ -1.64
LIG3P49916 RNU6-764P-201ENST00000516396 105 ntBASIC4.83□□□□□ -1.64
LIG3P49916 RNU6-143P-201ENST00000516942 93 ntBASIC4.83□□□□□ -1.64
LIG3P49916 AC087369.1-201ENST00000520775 996 ntBASIC4.83□□□□□ -1.64
LIG3P49916 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC4.83□□□□□ -1.64
LIG3P49916 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.83□□□□□ -1.64
LIG3P49916 AC022968.1-201ENST00000567372 442 ntBASIC4.83□□□□□ -1.64
LIG3P49916 AC005899.2-201ENST00000584353 90 ntBASIC4.83□□□□□ -1.64
LIG3P49916 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC4.83□□□□□ -1.64
LIG3P49916 AC022726.1-201ENST00000587475 207 ntBASIC4.83□□□□□ -1.64
LIG3P49916 AC002545.1-201ENST00000592511 181 ntBASIC4.83□□□□□ -1.64
LIG3P49916 AC011494.1-201ENST00000596454 237 ntBASIC4.83□□□□□ -1.64
LIG3P49916 NUTF2P8-201ENST00000604593 363 ntBASIC4.83□□□□□ -1.64
LIG3P49916 RNU6-85P-201ENST00000605989 107 ntBASIC4.83□□□□□ -1.64
LIG3P49916 AC005014.2-201ENST00000607795 599 ntBASIC4.83□□□□□ -1.64
LIG3P49916 AL161616.1-201ENST00000611867 286 ntBASIC4.83□□□□□ -1.64
LIG3P49916 AC087588.2-201ENST00000617667 426 ntBASIC4.83□□□□□ -1.64
LIG3P49916 TTK-211ENST00000627129 240 ntTSL 5 BASIC4.83□□□□□ -1.64
LIG3P49916 AL512643.1-201ENST00000635735 524 ntBASIC4.83□□□□□ -1.64
LIG3P49916 AL732372.2-225ENST00000642124 456 ntBASIC4.83□□□□□ -1.64
LIG3P49916 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
LIG3P49916 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC4.83□□□□□ -1.64
LIG3P49916 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
LIG3P49916 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC4.83□□□□□ -1.64
LIG3P49916 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
LIG3P49916 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC4.82□□□□□ -1.64
LIG3P49916 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC4.82□□□□□ -1.64
LIG3P49916 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
LIG3P49916 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC4.82□□□□□ -1.64
LIG3P49916 Y_RNA.2-201ENST00000362330 96 ntBASIC4.82□□□□□ -1.64
LIG3P49916 RNVU1-6-201ENST00000364688 164 ntBASIC4.82□□□□□ -1.64
LIG3P49916 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
LIG3P49916 RNU6-574P-201ENST00000384265 107 ntBASIC4.82□□□□□ -1.64
LIG3P49916 RNY1P14-201ENST00000384426 108 ntBASIC4.82□□□□□ -1.64
LIG3P49916 MIR124-3-201ENST00000384866 87 ntBASIC4.82□□□□□ -1.64
LIG3P49916 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
LIG3P49916 RN7SKP216-201ENST00000411050 312 ntBASIC4.82□□□□□ -1.64
LIG3P49916 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC4.82□□□□□ -1.64
LIG3P49916 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC4.82□□□□□ -1.64
LIG3P49916 AC244098.2-201ENST00000422068 99 ntBASIC4.82□□□□□ -1.64
LIG3P49916 HMGB1P9-201ENST00000429856 646 ntBASIC4.82□□□□□ -1.64
LIG3P49916 RPS17P8-201ENST00000434525 335 ntBASIC4.82□□□□□ -1.64
LIG3P49916 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC4.82□□□□□ -1.64
LIG3P49916 NOTCH2P1-201ENST00000443481 624 ntBASIC4.82□□□□□ -1.64
LIG3P49916 RPL12P25-201ENST00000455592 494 ntBASIC4.82□□□□□ -1.64
LIG3P49916 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC4.82□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 88 ms