Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC2.85□□□□□ -1.95
CDX1P47902 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
CDX1P47902 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC2.85□□□□□ -1.95
CDX1P47902 ARL1-211ENST00000551828 776 ntTSL 5 BASIC2.85□□□□□ -1.95
CDX1P47902 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC2.85□□□□□ -1.95
CDX1P47902 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC2.85□□□□□ -1.95
CDX1P47902 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC2.85□□□□□ -1.95
CDX1P47902 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC2.85□□□□□ -1.95
CDX1P47902 AC010591.1-201ENST00000603941 649 ntBASIC2.85□□□□□ -1.95
CDX1P47902 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC2.85□□□□□ -1.95
CDX1P47902 MIR7851-201ENST00000610611 160 ntBASIC2.85□□□□□ -1.95
CDX1P47902 AC131902.3-201ENST00000611767 581 ntBASIC2.85□□□□□ -1.95
CDX1P47902 AC091304.9-201ENST00000612091 226 ntBASIC2.85□□□□□ -1.95
CDX1P47902 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC2.85□□□□□ -1.95
CDX1P47902 AC079684.1-201ENST00000621405 437 ntBASIC2.85□□□□□ -1.95
CDX1P47902 AC009093.8-201ENST00000641769 292 ntBASIC2.85□□□□□ -1.95
CDX1P47902 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC2.85□□□□□ -1.95
CDX1P47902 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
CDX1P47902 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
CDX1P47902 HSPE1P11-201ENST00000339579 310 ntBASIC2.84□□□□□ -1.95
CDX1P47902 RNA5SP119-201ENST00000362715 117 ntBASIC2.84□□□□□ -1.95
CDX1P47902 U8.3-201ENST00000363321 132 ntBASIC2.84□□□□□ -1.95
CDX1P47902 RNU6-884P-201ENST00000363889 107 ntBASIC2.84□□□□□ -1.95
CDX1P47902 RNU4-1-201ENST00000363925 141 ntBASIC2.84□□□□□ -1.95
CDX1P47902 RNA5SP139-201ENST00000364340 117 ntBASIC2.84□□□□□ -1.95
CDX1P47902 SNORA51.4-201ENST00000364993 124 ntBASIC2.84□□□□□ -1.95
CDX1P47902 SNORA20.2-201ENST00000383922 131 ntBASIC2.84□□□□□ -1.95
CDX1P47902 RNA5SP171-201ENST00000391071 115 ntBASIC2.84□□□□□ -1.95
CDX1P47902 RNA5SP354-201ENST00000391247 136 ntBASIC2.84□□□□□ -1.95
CDX1P47902 AL139397.2-201ENST00000404529 772 ntBASIC2.84□□□□□ -1.95
CDX1P47902 RPS29P4-201ENST00000414733 161 ntBASIC2.84□□□□□ -1.95
CDX1P47902 AC093151.1-201ENST00000427711 313 ntBASIC2.84□□□□□ -1.95
CDX1P47902 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC2.84□□□□□ -1.95
CDX1P47902 AC091286.1-201ENST00000431233 461 ntBASIC2.84□□□□□ -1.95
CDX1P47902 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC2.84□□□□□ -1.95
CDX1P47902 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC2.84□□□□□ -1.95
CDX1P47902 HSPD1P21-201ENST00000436541 245 ntBASIC2.84□□□□□ -1.95
CDX1P47902 AL714022.1-201ENST00000439897 151 ntBASIC2.84□□□□□ -1.95
CDX1P47902 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC2.84□□□□□ -1.95
CDX1P47902 AP000936.2-201ENST00000447151 681 ntBASIC2.84□□□□□ -1.95
CDX1P47902 AL358232.1-201ENST00000448030 501 ntBASIC2.84□□□□□ -1.95
CDX1P47902 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC2.84□□□□□ -1.95
CDX1P47902 RNU7-23P-201ENST00000459465 62 ntBASIC2.84□□□□□ -1.95
CDX1P47902 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC2.84□□□□□ -1.95
CDX1P47902 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC2.84□□□□□ -1.95
CDX1P47902 AC021205.2-201ENST00000480069 347 ntBASIC2.84□□□□□ -1.95
CDX1P47902 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC2.84□□□□□ -1.95
CDX1P47902 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC2.84□□□□□ -1.95
CDX1P47902 AC104619.4-201ENST00000510773 249 ntBASIC2.84□□□□□ -1.95
CDX1P47902 AC117532.1-201ENST00000514638 323 ntBASIC2.84□□□□□ -1.95
CDX1P47902 RNU6-143P-201ENST00000516942 93 ntBASIC2.84□□□□□ -1.95
CDX1P47902 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC2.84□□□□□ -1.95
CDX1P47902 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC2.84□□□□□ -1.95
CDX1P47902 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC2.84□□□□□ -1.95
CDX1P47902 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC2.84□□□□□ -1.95
CDX1P47902 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC2.84□□□□□ -1.95
CDX1P47902 RPL21P12-201ENST00000559810 515 ntBASIC2.84□□□□□ -1.95
CDX1P47902 AC067852.3-201ENST00000589177 561 ntBASIC2.84□□□□□ -1.95
CDX1P47902 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC2.84□□□□□ -1.95
CDX1P47902 AC110760.3-201ENST00000598794 467 ntBASIC2.84□□□□□ -1.95
CDX1P47902 MTND4LP5-201ENST00000605152 292 ntBASIC2.84□□□□□ -1.95
CDX1P47902 AC004832.5-201ENST00000608677 401 ntBASIC2.84□□□□□ -1.95
CDX1P47902 AL161734.1-201ENST00000609720 557 ntBASIC2.84□□□□□ -1.95
CDX1P47902 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC2.84□□□□□ -1.95
CDX1P47902 TEX41-280ENST00000629185 591 ntTSL 5 BASIC2.84□□□□□ -1.95
CDX1P47902 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC2.84□□□□□ -1.95
CDX1P47902 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.96
CDX1P47902 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.96
CDX1P47902 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC2.83□□□□□ -1.96
CDX1P47902 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
CDX1P47902 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
CDX1P47902 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC2.83□□□□□ -1.96
CDX1P47902 AC010680.1-201ENST00000590024 3590 ntBASIC2.83□□□□□ -1.96
CDX1P47902 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC2.83□□□□□ -1.96
CDX1P47902 Y_RNA.201-201ENST00000364052 96 ntBASIC2.83□□□□□ -1.96
CDX1P47902 RNU6-960P-201ENST00000364056 120 ntBASIC2.83□□□□□ -1.96
CDX1P47902 RNU6-188P-201ENST00000364207 107 ntBASIC2.83□□□□□ -1.96
CDX1P47902 5S_rRNA.1-201ENST00000364415 116 ntBASIC2.83□□□□□ -1.96
CDX1P47902 SMIM11P1-201ENST00000369586 178 ntBASIC2.83□□□□□ -1.96
CDX1P47902 RNU6-14P-201ENST00000384630 106 ntBASIC2.83□□□□□ -1.96
CDX1P47902 MIR218-2-201ENST00000385006 110 ntBASIC2.83□□□□□ -1.96
CDX1P47902 RPL21P3-201ENST00000395517 478 ntBASIC2.83□□□□□ -1.96
CDX1P47902 RNA5SP344-201ENST00000411081 104 ntBASIC2.83□□□□□ -1.96
CDX1P47902 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC2.83□□□□□ -1.96
CDX1P47902 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC2.83□□□□□ -1.96
CDX1P47902 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC2.83□□□□□ -1.96
CDX1P47902 AL451062.2-201ENST00000427515 271 ntBASIC2.83□□□□□ -1.96
CDX1P47902 OR2AS1P-201ENST00000427827 319 ntBASIC2.83□□□□□ -1.96
CDX1P47902 CYCSP4-201ENST00000429682 331 ntBASIC2.83□□□□□ -1.96
CDX1P47902 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC2.83□□□□□ -1.96
CDX1P47902 HMGB3P12-201ENST00000438745 556 ntBASIC2.83□□□□□ -1.96
CDX1P47902 MTND1P27-201ENST00000451117 902 ntBASIC2.83□□□□□ -1.96
CDX1P47902 AC073387.1-201ENST00000453261 709 ntBASIC2.83□□□□□ -1.96
CDX1P47902 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC2.83□□□□□ -1.96
CDX1P47902 AC093899.1-201ENST00000457984 376 ntBASIC2.83□□□□□ -1.96
CDX1P47902 AC146507.2-201ENST00000460608 476 ntBASIC2.83□□□□□ -1.96
CDX1P47902 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC2.83□□□□□ -1.96
CDX1P47902 ARL4AP2-201ENST00000507378 601 ntBASIC2.83□□□□□ -1.96
CDX1P47902 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC2.83□□□□□ -1.96
CDX1P47902 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC2.83□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 112.3 ms