Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
COL18A1P39060 AC121161.1-201ENST00000510606 652 ntBASIC2.07□□□□□ -2.08
COL18A1P39060 MIR449C-201ENST00000516047 92 ntBASIC2.07□□□□□ -2.08
COL18A1P39060 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC2.07□□□□□ -2.08
COL18A1P39060 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC2.07□□□□□ -2.08
COL18A1P39060 OR8K2P-201ENST00000524645 927 ntBASIC2.07□□□□□ -2.08
COL18A1P39060 FAM60BP-201ENST00000578364 658 ntBASIC2.07□□□□□ -2.08
COL18A1P39060 AC010738.1-201ENST00000604970 987 ntBASIC2.07□□□□□ -2.08
COL18A1P39060 PSMD5-AS1-215ENST00000640622 205 ntBASIC2.07□□□□□ -2.08
COL18A1P39060 MTND4P1-201ENST00000457501 1466 ntBASIC2.07□□□□□ -2.08
COL18A1P39060 GDI2P1-201ENST00000429312 1336 ntBASIC2.07□□□□□ -2.08
COL18A1P39060 NUP58P1-201ENST00000502546 1738 ntBASIC2.07□□□□□ -2.08
COL18A1P39060 RNA5SP139-201ENST00000364340 117 ntBASIC2.06□□□□□ -2.08
COL18A1P39060 HMGB3P2-201ENST00000411913 584 ntBASIC2.06□□□□□ -2.08
COL18A1P39060 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC2.06□□□□□ -2.08
COL18A1P39060 OFD1P2Y-201ENST00000421895 1149 ntBASIC2.06□□□□□ -2.08
COL18A1P39060 BTBD7P2-201ENST00000441962 620 ntBASIC2.06□□□□□ -2.08
COL18A1P39060 AL050341.1-201ENST00000447743 313 ntBASIC2.06□□□□□ -2.08
COL18A1P39060 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC2.06□□□□□ -2.08
COL18A1P39060 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC2.06□□□□□ -2.08
COL18A1P39060 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC2.06□□□□□ -2.08
COL18A1P39060 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC2.06□□□□□ -2.08
COL18A1P39060 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC2.06□□□□□ -2.08
COL18A1P39060 AC098799.2-201ENST00000509466 868 ntBASIC2.06□□□□□ -2.08
COL18A1P39060 AC006518.2-201ENST00000542513 940 ntBASIC2.06□□□□□ -2.08
COL18A1P39060 DUXAP4-201ENST00000603046 613 ntBASIC2.06□□□□□ -2.08
COL18A1P39060 AC090617.7-201ENST00000623952 126 ntBASIC2.06□□□□□ -2.08
COL18A1P39060 AL163152.1-201ENST00000642001 374 ntBASIC2.06□□□□□ -2.08
COL18A1P39060 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC2.06□□□□□ -2.08
COL18A1P39060 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC2.06□□□□□ -2.08
COL18A1P39060 ATP6V1G3-202ENST00000309309 678 ntTSL 5 BASIC2.05□□□□□ -2.08
COL18A1P39060 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC2.05□□□□□ -2.08
COL18A1P39060 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
COL18A1P39060 OR1L1-202ENST00000373686 1083 ntBASIC2.05□□□□□ -2.08
COL18A1P39060 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
COL18A1P39060 U6.112-201ENST00000384129 70 ntBASIC2.05□□□□□ -2.08
COL18A1P39060 SNORA1.3-201ENST00000384676 136 ntBASIC2.05□□□□□ -2.08
COL18A1P39060 AL136372.1-201ENST00000403060 228 ntBASIC2.05□□□□□ -2.08
COL18A1P39060 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC2.05□□□□□ -2.08
COL18A1P39060 RPS4XP11-201ENST00000446897 772 ntBASIC2.05□□□□□ -2.08
COL18A1P39060 OR6K5P-201ENST00000447050 945 ntBASIC2.05□□□□□ -2.08
COL18A1P39060 MTND3P24-201ENST00000506306 329 ntBASIC2.05□□□□□ -2.08
COL18A1P39060 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC2.05□□□□□ -2.08
COL18A1P39060 RNA5SP135-201ENST00000517019 125 ntBASIC2.05□□□□□ -2.08
COL18A1P39060 OR10V3P-201ENST00000525712 725 ntBASIC2.05□□□□□ -2.08
COL18A1P39060 MIR3618-201ENST00000580330 88 ntBASIC2.05□□□□□ -2.08
COL18A1P39060 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC2.05□□□□□ -2.08
COL18A1P39060 AC009318.4-201ENST00000620496 486 ntBASIC2.05□□□□□ -2.08
COL18A1P39060 AC007275.1-201ENST00000621243 671 ntBASIC2.05□□□□□ -2.08
COL18A1P39060 DUXAP9-208ENST00000622815 614 ntBASIC2.05□□□□□ -2.08
COL18A1P39060 AC040168.1-201ENST00000623594 991 ntBASIC2.05□□□□□ -2.08
COL18A1P39060 AL121594.5-201ENST00000631724 573 ntBASIC2.05□□□□□ -2.08
COL18A1P39060 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.05□□□□□ -2.08
COL18A1P39060 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.05□□□□□ -2.08
COL18A1P39060 SNORD116-23-201ENST00000384645 92 ntBASIC2.05□□□□□ -2.08
COL18A1P39060 RPS15AP38-201ENST00000413110 372 ntBASIC2.05□□□□□ -2.08
COL18A1P39060 SFR1P2-201ENST00000421841 730 ntBASIC2.05□□□□□ -2.08
COL18A1P39060 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC2.05□□□□□ -2.08
COL18A1P39060 RPL17P35-201ENST00000432217 549 ntBASIC2.05□□□□□ -2.08
COL18A1P39060 MTND4P15-201ENST00000437913 1033 ntBASIC2.05□□□□□ -2.08
COL18A1P39060 AL645638.1-201ENST00000440519 361 ntBASIC2.05□□□□□ -2.08
COL18A1P39060 GXYLT1P1-201ENST00000446657 490 ntBASIC2.05□□□□□ -2.08
COL18A1P39060 SNORD53B-201ENST00000577887 78 ntBASIC2.05□□□□□ -2.08
COL18A1P39060 MIR3199-1-201ENST00000582434 88 ntBASIC2.05□□□□□ -2.08
COL18A1P39060 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC2.05□□□□□ -2.08
COL18A1P39060 AC008083.4-201ENST00000615076 444 ntBASIC2.05□□□□□ -2.08
COL18A1P39060 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC2.05□□□□□ -2.08
COL18A1P39060 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC2.05□□□□□ -2.08
COL18A1P39060 AC091948.2-201ENST00000636510 279 ntBASIC2.05□□□□□ -2.08
COL18A1P39060 BX649567.1-201ENST00000642071 1134 ntBASIC2.05□□□□□ -2.08
COL18A1P39060 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.05□□□□□ -2.08
COL18A1P39060 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC2.05□□□□□ -2.08
COL18A1P39060 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.05□□□□□ -2.08
COL18A1P39060 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC2.04□□□□□ -2.08
COL18A1P39060 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
COL18A1P39060 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
COL18A1P39060 VTRNA1-1-201ENST00000363120 99 ntBASIC2.04□□□□□ -2.08
COL18A1P39060 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC2.04□□□□□ -2.08
COL18A1P39060 MIR613-201ENST00000385248 95 ntBASIC2.04□□□□□ -2.08
COL18A1P39060 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC2.04□□□□□ -2.08
COL18A1P39060 AC012497.1-201ENST00000429392 575 ntBASIC2.04□□□□□ -2.08
COL18A1P39060 MTCYBP45-201ENST00000435243 565 ntBASIC2.04□□□□□ -2.08
COL18A1P39060 AC003991.1-202ENST00000447058 777 ntTSL 3 BASIC2.04□□□□□ -2.08
COL18A1P39060 CCNB1IP1P3-201ENST00000454702 829 ntBASIC2.04□□□□□ -2.08
COL18A1P39060 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC2.04□□□□□ -2.08
COL18A1P39060 RNA5SP310-201ENST00000459084 116 ntBASIC2.04□□□□□ -2.08
COL18A1P39060 AC078857.1-201ENST00000469870 667 ntBASIC2.04□□□□□ -2.08
COL18A1P39060 AC015908.1-201ENST00000478739 476 ntBASIC2.04□□□□□ -2.08
COL18A1P39060 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC2.04□□□□□ -2.08
COL18A1P39060 AIG1P1-201ENST00000503376 148 ntBASIC2.04□□□□□ -2.08
COL18A1P39060 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC2.04□□□□□ -2.08
COL18A1P39060 RNU6-27P-201ENST00000516146 107 ntBASIC2.04□□□□□ -2.08
COL18A1P39060 RNU6-1095P-201ENST00000516148 108 ntBASIC2.04□□□□□ -2.08
COL18A1P39060 TSPAN19-204ENST00000532498 998 ntAPPRIS P1 TSL 5 BASIC2.04□□□□□ -2.08
COL18A1P39060 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC2.04□□□□□ -2.08
COL18A1P39060 SNRPGP1-201ENST00000553864 222 ntBASIC2.04□□□□□ -2.08
COL18A1P39060 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC2.04□□□□□ -2.08
COL18A1P39060 AC090666.1-201ENST00000578241 445 ntBASIC2.04□□□□□ -2.08
COL18A1P39060 OR4K8P-201ENST00000578842 1048 ntBASIC2.04□□□□□ -2.08
COL18A1P39060 AP003973.1-201ENST00000604639 691 ntBASIC2.04□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 98.4 ms