Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
HOXD3P31249 AC009812.4-201ENST00000569134 1805 ntBASIC3.23□□□□□ -1.89
HOXD3P31249 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC3.23□□□□□ -1.89
HOXD3P31249 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC3.23□□□□□ -1.89
HOXD3P31249 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
HOXD3P31249 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC3.23□□□□□ -1.89
HOXD3P31249 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC3.22□□□□□ -1.89
HOXD3P31249 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC3.22□□□□□ -1.89
HOXD3P31249 RNU4-79P-201ENST00000362764 141 ntBASIC3.22□□□□□ -1.89
HOXD3P31249 SNORA36C-201ENST00000384289 132 ntBASIC3.22□□□□□ -1.89
HOXD3P31249 RNA5SP146-201ENST00000410743 123 ntBASIC3.22□□□□□ -1.89
HOXD3P31249 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC3.22□□□□□ -1.89
HOXD3P31249 AC009161.1-201ENST00000417306 376 ntBASIC3.22□□□□□ -1.89
HOXD3P31249 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC3.22□□□□□ -1.89
HOXD3P31249 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC3.22□□□□□ -1.89
HOXD3P31249 NEFMP1-201ENST00000443423 1006 ntBASIC3.22□□□□□ -1.89
HOXD3P31249 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC3.22□□□□□ -1.89
HOXD3P31249 PPP1R2P5-201ENST00000457256 603 ntBASIC3.22□□□□□ -1.89
HOXD3P31249 SCARNA18-201ENST00000459004 134 ntBASIC3.22□□□□□ -1.89
HOXD3P31249 RPL21P93-201ENST00000480465 489 ntBASIC3.22□□□□□ -1.89
HOXD3P31249 UBE2Q2P9-201ENST00000490086 202 ntBASIC3.22□□□□□ -1.89
HOXD3P31249 AP001086.1-201ENST00000494882 321 ntBASIC3.22□□□□□ -1.89
HOXD3P31249 KLHL2P1-201ENST00000508691 521 ntBASIC3.22□□□□□ -1.89
HOXD3P31249 FAM206BP-201ENST00000510179 541 ntBASIC3.22□□□□□ -1.89
HOXD3P31249 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC3.22□□□□□ -1.89
HOXD3P31249 RNU6-277P-201ENST00000516272 106 ntBASIC3.22□□□□□ -1.89
HOXD3P31249 RNA5SP143-201ENST00000516936 115 ntBASIC3.22□□□□□ -1.89
HOXD3P31249 RNU6-840P-201ENST00000517275 65 ntBASIC3.22□□□□□ -1.89
HOXD3P31249 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC3.22□□□□□ -1.89
HOXD3P31249 AP004371.1-201ENST00000525240 214 ntBASIC3.22□□□□□ -1.89
HOXD3P31249 AL137161.1-201ENST00000532231 390 ntBASIC3.22□□□□□ -1.89
HOXD3P31249 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC3.22□□□□□ -1.89
HOXD3P31249 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC3.22□□□□□ -1.89
HOXD3P31249 AL355375.2-201ENST00000574825 175 ntBASIC3.22□□□□□ -1.89
HOXD3P31249 AC022655.2-201ENST00000577280 318 ntBASIC3.22□□□□□ -1.89
HOXD3P31249 FAM60BP-201ENST00000578364 658 ntBASIC3.22□□□□□ -1.89
HOXD3P31249 AC053481.4-201ENST00000583164 216 ntBASIC3.22□□□□□ -1.89
HOXD3P31249 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC3.22□□□□□ -1.89
HOXD3P31249 AC006116.10-201ENST00000591836 581 ntBASIC3.22□□□□□ -1.89
HOXD3P31249 SNRPGP15-201ENST00000600149 222 ntBASIC3.22□□□□□ -1.89
HOXD3P31249 AC092807.2-201ENST00000609367 243 ntBASIC3.22□□□□□ -1.89
HOXD3P31249 SDR42E1P2-201ENST00000614861 481 ntBASIC3.22□□□□□ -1.89
HOXD3P31249 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC3.22□□□□□ -1.89
HOXD3P31249 SMCR2_2.1-201ENST00000619783 161 ntBASIC3.22□□□□□ -1.89
HOXD3P31249 AL357559.1-201ENST00000622228 274 ntBASIC3.22□□□□□ -1.89
HOXD3P31249 AC007998.5-201ENST00000622938 237 ntBASIC3.22□□□□□ -1.89
HOXD3P31249 AC048347.1-201ENST00000624621 427 ntBASIC3.22□□□□□ -1.89
HOXD3P31249 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
HOXD3P31249 AL133383.2-201ENST00000622958 2336 ntBASIC3.22□□□□□ -1.89
HOXD3P31249 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC3.22□□□□□ -1.89
HOXD3P31249 RPS4XP5-202ENST00000449995 1334 ntBASIC3.21□□□□□ -1.89
HOXD3P31249 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC3.21□□□□□ -1.9
HOXD3P31249 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC3.21□□□□□ -1.9
HOXD3P31249 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC3.21□□□□□ -1.9
HOXD3P31249 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC3.21□□□□□ -1.9
HOXD3P31249 AC106871.1-201ENST00000568324 3102 ntBASIC3.21□□□□□ -1.9
HOXD3P31249 Y_RNA.67-201ENST00000362870 100 ntBASIC3.21□□□□□ -1.9
HOXD3P31249 RNU6-1252P-201ENST00000363054 104 ntBASIC3.21□□□□□ -1.9
HOXD3P31249 RNU4-76P-201ENST00000364509 141 ntBASIC3.21□□□□□ -1.9
HOXD3P31249 Y_RNA.419-201ENST00000384041 102 ntBASIC3.21□□□□□ -1.9
HOXD3P31249 AL139039.1-201ENST00000401900 692 ntBASIC3.21□□□□□ -1.9
HOXD3P31249 LAP3P1-201ENST00000403648 294 ntBASIC3.21□□□□□ -1.9
HOXD3P31249 AL139397.2-201ENST00000404529 772 ntBASIC3.21□□□□□ -1.9
HOXD3P31249 HSPE1P26-201ENST00000405341 275 ntBASIC3.21□□□□□ -1.9
HOXD3P31249 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC3.21□□□□□ -1.9
HOXD3P31249 CALM2P2-201ENST00000428512 440 ntBASIC3.21□□□□□ -1.9
HOXD3P31249 RPL21P112-201ENST00000434403 463 ntBASIC3.21□□□□□ -1.9
HOXD3P31249 KCTD9P3-201ENST00000434597 1169 ntBASIC3.21□□□□□ -1.9
HOXD3P31249 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC3.21□□□□□ -1.9
HOXD3P31249 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC3.21□□□□□ -1.9
HOXD3P31249 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC3.21□□□□□ -1.9
HOXD3P31249 RNA5SP246-201ENST00000458909 119 ntBASIC3.21□□□□□ -1.9
HOXD3P31249 RPL21P8-201ENST00000465083 535 ntBASIC3.21□□□□□ -1.9
HOXD3P31249 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC3.21□□□□□ -1.9
HOXD3P31249 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC3.21□□□□□ -1.9
HOXD3P31249 HMGB1P22-201ENST00000505315 124 ntBASIC3.21□□□□□ -1.9
HOXD3P31249 AC091885.1-201ENST00000506658 268 ntBASIC3.21□□□□□ -1.9
HOXD3P31249 RN7SKP256-201ENST00000517201 314 ntBASIC3.21□□□□□ -1.9
HOXD3P31249 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC3.21□□□□□ -1.9
HOXD3P31249 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC3.21□□□□□ -1.9
HOXD3P31249 AC011611.1-201ENST00000552179 197 ntBASIC3.21□□□□□ -1.9
HOXD3P31249 RN7SL703P-201ENST00000578485 302 ntBASIC3.21□□□□□ -1.9
HOXD3P31249 AC067852.3-201ENST00000589177 561 ntBASIC3.21□□□□□ -1.9
HOXD3P31249 AC044792.1-201ENST00000593294 196 ntBASIC3.21□□□□□ -1.9
HOXD3P31249 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC3.21□□□□□ -1.9
HOXD3P31249 AC012409.4-201ENST00000612923 249 ntBASIC3.21□□□□□ -1.9
HOXD3P31249 AC007742.2-201ENST00000618226 398 ntBASIC3.21□□□□□ -1.9
HOXD3P31249 RMST_9.1-201ENST00000619945 193 ntBASIC3.21□□□□□ -1.9
HOXD3P31249 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
HOXD3P31249 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC3.21□□□□□ -1.9
HOXD3P31249 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC3.21□□□□□ -1.9
HOXD3P31249 TPTE2P4-201ENST00000258589 1605 ntBASIC3.21□□□□□ -1.9
HOXD3P31249 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC3.21□□□□□ -1.9
HOXD3P31249 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC3.21□□□□□ -1.9
HOXD3P31249 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
HOXD3P31249 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
HOXD3P31249 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
HOXD3P31249 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC3.21□□□□□ -1.9
HOXD3P31249 SPATA31D2P-201ENST00000429999 4388 ntBASIC3.21□□□□□ -1.9
HOXD3P31249 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 117.3 ms