Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC4.19□□□□□ -1.74
SMARCA1P28370 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC4.19□□□□□ -1.74
SMARCA1P28370 MIR4429-201ENST00000580105 73 ntBASIC4.19□□□□□ -1.74
SMARCA1P28370 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC4.19□□□□□ -1.74
SMARCA1P28370 AL391261.4-201ENST00000616012 481 ntBASIC4.19□□□□□ -1.74
SMARCA1P28370 YWHAEP7-203ENST00000622054 312 ntBASIC4.19□□□□□ -1.74
SMARCA1P28370 AC244205.2-202ENST00000635781 342 ntBASIC4.19□□□□□ -1.74
SMARCA1P28370 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC4.19□□□□□ -1.74
SMARCA1P28370 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC4.19□□□□□ -1.74
SMARCA1P28370 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
SMARCA1P28370 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC4.19□□□□□ -1.74
SMARCA1P28370 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
SMARCA1P28370 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
SMARCA1P28370 AF127577.6-201ENST00000623352 2191 ntBASIC4.19□□□□□ -1.74
SMARCA1P28370 MFSD8-233ENST00000641482 4860 ntBASIC4.18□□□□□ -1.74
SMARCA1P28370 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC4.18□□□□□ -1.74
SMARCA1P28370 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC4.18□□□□□ -1.74
SMARCA1P28370 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC4.18□□□□□ -1.74
SMARCA1P28370 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC4.18□□□□□ -1.74
SMARCA1P28370 AP001148.1-201ENST00000624124 2359 ntBASIC4.18□□□□□ -1.74
SMARCA1P28370 CASC19-280ENST00000642102 1351 ntBASIC4.18□□□□□ -1.74
SMARCA1P28370 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
SMARCA1P28370 RNU1-18P-201ENST00000363062 164 ntBASIC4.18□□□□□ -1.74
SMARCA1P28370 RNY3P3-201ENST00000363816 102 ntBASIC4.18□□□□□ -1.74
SMARCA1P28370 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC4.18□□□□□ -1.74
SMARCA1P28370 RNU6-882P-201ENST00000391025 103 ntBASIC4.18□□□□□ -1.74
SMARCA1P28370 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
SMARCA1P28370 AL136372.1-201ENST00000403060 228 ntBASIC4.18□□□□□ -1.74
SMARCA1P28370 U3.39-201ENST00000408569 239 ntBASIC4.18□□□□□ -1.74
SMARCA1P28370 RPL21P24-201ENST00000413752 448 ntBASIC4.18□□□□□ -1.74
SMARCA1P28370 ZNF90P2-204ENST00000419323 1075 ntBASIC4.18□□□□□ -1.74
SMARCA1P28370 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
SMARCA1P28370 PPP1R11P2-201ENST00000423543 382 ntBASIC4.18□□□□□ -1.74
SMARCA1P28370 AC006989.1-201ENST00000427212 131 ntBASIC4.18□□□□□ -1.74
SMARCA1P28370 MED13P1-201ENST00000428342 171 ntBASIC4.18□□□□□ -1.74
SMARCA1P28370 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC4.18□□□□□ -1.74
SMARCA1P28370 AL671855.1-201ENST00000446875 1203 ntBASIC4.18□□□□□ -1.74
SMARCA1P28370 CACYBPP2-201ENST00000453625 678 ntBASIC4.18□□□□□ -1.74
SMARCA1P28370 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC4.18□□□□□ -1.74
SMARCA1P28370 RPL21P104-201ENST00000464143 478 ntBASIC4.18□□□□□ -1.74
SMARCA1P28370 AC233702.1-201ENST00000482905 502 ntBASIC4.18□□□□□ -1.74
SMARCA1P28370 AC026427.2-201ENST00000506228 536 ntBASIC4.18□□□□□ -1.74
SMARCA1P28370 RNU7-51P-201ENST00000516560 62 ntBASIC4.18□□□□□ -1.74
SMARCA1P28370 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
SMARCA1P28370 AC103843.2-201ENST00000530523 682 ntBASIC4.18□□□□□ -1.74
SMARCA1P28370 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC4.18□□□□□ -1.74
SMARCA1P28370 FAM60BP-201ENST00000578364 658 ntBASIC4.18□□□□□ -1.74
SMARCA1P28370 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC4.18□□□□□ -1.74
SMARCA1P28370 AL035413.2-201ENST00000604801 525 ntBASIC4.18□□□□□ -1.74
SMARCA1P28370 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
SMARCA1P28370 AL355810.1-201ENST00000614629 552 ntBASIC4.18□□□□□ -1.74
SMARCA1P28370 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC4.18□□□□□ -1.74
SMARCA1P28370 AC092794.2-201ENST00000620933 563 ntBASIC4.18□□□□□ -1.74
SMARCA1P28370 AL034408.1-202ENST00000636088 415 ntBASIC4.18□□□□□ -1.74
SMARCA1P28370 MIR3662-201ENST00000637030 95 ntBASIC4.18□□□□□ -1.74
SMARCA1P28370 AC024614.3-201ENST00000637860 256 ntBASIC4.18□□□□□ -1.74
SMARCA1P28370 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC4.18□□□□□ -1.74
SMARCA1P28370 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC4.18□□□□□ -1.74
SMARCA1P28370 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC4.18□□□□□ -1.74
SMARCA1P28370 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
SMARCA1P28370 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
SMARCA1P28370 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC4.17□□□□□ -1.74
SMARCA1P28370 CKAP2P1-201ENST00000555477 2049 ntBASIC4.17□□□□□ -1.74
SMARCA1P28370 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC4.17□□□□□ -1.74
SMARCA1P28370 DDX10P1-201ENST00000448545 1933 ntBASIC4.17□□□□□ -1.74
SMARCA1P28370 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
SMARCA1P28370 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC4.17□□□□□ -1.74
SMARCA1P28370 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
SMARCA1P28370 RNA5SP42-201ENST00000364278 115 ntBASIC4.17□□□□□ -1.74
SMARCA1P28370 SNORA23-201ENST00000365128 182 ntBASIC4.17□□□□□ -1.74
SMARCA1P28370 MIR449B-201ENST00000384995 97 ntBASIC4.17□□□□□ -1.74
SMARCA1P28370 MT-TL1-201ENST00000386347 75 ntBASIC4.17□□□□□ -1.74
SMARCA1P28370 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC4.17□□□□□ -1.74
SMARCA1P28370 OR51A5P-201ENST00000415429 942 ntBASIC4.17□□□□□ -1.74
SMARCA1P28370 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
SMARCA1P28370 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC4.17□□□□□ -1.74
SMARCA1P28370 MTCO3P45-201ENST00000443036 613 ntBASIC4.17□□□□□ -1.74
SMARCA1P28370 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC4.17□□□□□ -1.74
SMARCA1P28370 RBMY2UP-201ENST00000453474 324 ntBASIC4.17□□□□□ -1.74
SMARCA1P28370 AL356010.1-201ENST00000456364 102 ntBASIC4.17□□□□□ -1.74
SMARCA1P28370 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC4.17□□□□□ -1.74
SMARCA1P28370 AC006512.1-201ENST00000468816 291 ntBASIC4.17□□□□□ -1.74
SMARCA1P28370 RPL7L1P8-201ENST00000469911 741 ntBASIC4.17□□□□□ -1.74
SMARCA1P28370 AC126389.1-201ENST00000477436 290 ntBASIC4.17□□□□□ -1.74
SMARCA1P28370 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC4.17□□□□□ -1.74
SMARCA1P28370 RNA5SP143-201ENST00000516936 115 ntBASIC4.17□□□□□ -1.74
SMARCA1P28370 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC4.17□□□□□ -1.74
SMARCA1P28370 AC100870.1-201ENST00000522035 505 ntBASIC4.17□□□□□ -1.74
SMARCA1P28370 HIF1AP1-201ENST00000553642 175 ntBASIC4.17□□□□□ -1.74
SMARCA1P28370 MEG8-215ENST00000555354 469 ntTSL 3 BASIC4.17□□□□□ -1.74
SMARCA1P28370 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC4.17□□□□□ -1.74
SMARCA1P28370 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC4.17□□□□□ -1.74
SMARCA1P28370 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC4.17□□□□□ -1.74
SMARCA1P28370 BNIP3P30-201ENST00000601184 574 ntBASIC4.17□□□□□ -1.74
SMARCA1P28370 AC010591.1-201ENST00000603941 649 ntBASIC4.17□□□□□ -1.74
SMARCA1P28370 AL022099.1-201ENST00000604551 712 ntBASIC4.17□□□□□ -1.74
SMARCA1P28370 AC006077.1-201ENST00000604746 343 ntBASIC4.17□□□□□ -1.74
SMARCA1P28370 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC4.17□□□□□ -1.74
SMARCA1P28370 AL354950.2-201ENST00000617939 290 ntBASIC4.17□□□□□ -1.74
SMARCA1P28370 MIR6075-201ENST00000620782 95 ntBASIC4.17□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 213 ms