Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 Y_RNA.638-201ENST00000459374 113 ntBASIC5.01□□□□□ -1.61
MSX1P28360 AP001324.2-201ENST00000461163 319 ntBASIC5.01□□□□□ -1.61
MSX1P28360 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC5.01□□□□□ -1.61
MSX1P28360 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC5.01□□□□□ -1.61
MSX1P28360 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC5.01□□□□□ -1.61
MSX1P28360 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC5.01□□□□□ -1.61
MSX1P28360 RNU6-513P-201ENST00000516104 104 ntBASIC5.01□□□□□ -1.61
MSX1P28360 SCARNA16.4-201ENST00000516956 187 ntBASIC5.01□□□□□ -1.61
MSX1P28360 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC5.01□□□□□ -1.61
MSX1P28360 HMGN2P6-201ENST00000551091 273 ntBASIC5.01□□□□□ -1.61
MSX1P28360 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC5.01□□□□□ -1.61
MSX1P28360 HMGB1P14-201ENST00000557424 591 ntBASIC5.01□□□□□ -1.61
MSX1P28360 AC005046.1-201ENST00000608515 625 ntBASIC5.01□□□□□ -1.61
MSX1P28360 AC108706.1-201ENST00000611053 297 ntBASIC5.01□□□□□ -1.61
MSX1P28360 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC5.01□□□□□ -1.61
MSX1P28360 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC5.01□□□□□ -1.61
MSX1P28360 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
MSX1P28360 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
MSX1P28360 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC5.01□□□□□ -1.61
MSX1P28360 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
MSX1P28360 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC5□□□□□ -1.61
MSX1P28360 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC5□□□□□ -1.61
MSX1P28360 ZNF826P-207ENST00000622273 1910 ntBASIC5□□□□□ -1.61
MSX1P28360 RNA5SP183-201ENST00000362452 119 ntBASIC5□□□□□ -1.61
MSX1P28360 Y_RNA.286-201ENST00000364813 102 ntBASIC5□□□□□ -1.61
MSX1P28360 SNORD56.6-201ENST00000384569 71 ntBASIC5□□□□□ -1.61
MSX1P28360 Y_RNA.569-201ENST00000384749 103 ntBASIC5□□□□□ -1.61
MSX1P28360 MIR585-201ENST00000384887 94 ntBASIC5□□□□□ -1.61
MSX1P28360 AL022722.2-201ENST00000402519 180 ntBASIC5□□□□□ -1.61
MSX1P28360 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC5□□□□□ -1.61
MSX1P28360 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC5□□□□□ -1.61
MSX1P28360 AC099670.2-201ENST00000435130 321 ntBASIC5□□□□□ -1.61
MSX1P28360 AC005002.2-201ENST00000438228 269 ntBASIC5□□□□□ -1.61
MSX1P28360 AL031659.1-201ENST00000447075 539 ntBASIC5□□□□□ -1.61
MSX1P28360 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC5□□□□□ -1.61
MSX1P28360 TOMM22P6-201ENST00000465035 409 ntBASIC5□□□□□ -1.61
MSX1P28360 AC104164.2-201ENST00000496953 495 ntBASIC5□□□□□ -1.61
MSX1P28360 AC008953.1-201ENST00000497334 318 ntBASIC5□□□□□ -1.61
MSX1P28360 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC5□□□□□ -1.61
MSX1P28360 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC5□□□□□ -1.61
MSX1P28360 AC008694.2-201ENST00000517591 306 ntBASIC5□□□□□ -1.61
MSX1P28360 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC5□□□□□ -1.61
MSX1P28360 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC5□□□□□ -1.61
MSX1P28360 ASB8-202ENST00000535055 657 ntTSL 2 BASIC5□□□□□ -1.61
MSX1P28360 AC005476.1-201ENST00000554427 397 ntBASIC5□□□□□ -1.61
MSX1P28360 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC5□□□□□ -1.61
MSX1P28360 H3F3AP1-201ENST00000559984 334 ntBASIC5□□□□□ -1.61
MSX1P28360 AL390726.5-202ENST00000564800 256 ntBASIC5□□□□□ -1.61
MSX1P28360 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC5□□□□□ -1.61
MSX1P28360 MIR7853-201ENST00000584820 132 ntBASIC5□□□□□ -1.61
MSX1P28360 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC5□□□□□ -1.61
MSX1P28360 AC024940.4-201ENST00000605507 246 ntBASIC5□□□□□ -1.61
MSX1P28360 AL360181.4-201ENST00000621752 134 ntBASIC5□□□□□ -1.61
MSX1P28360 CCL14-204ENST00000622526 472 ntTSL 3 BASIC5□□□□□ -1.61
MSX1P28360 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC5□□□□□ -1.61
MSX1P28360 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
MSX1P28360 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC5□□□□□ -1.61
MSX1P28360 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
MSX1P28360 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC5□□□□□ -1.61
MSX1P28360 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC5□□□□□ -1.61
MSX1P28360 AL731532.2-201ENST00000623542 1953 ntBASIC5□□□□□ -1.61
MSX1P28360 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC5□□□□□ -1.61
MSX1P28360 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC5□□□□□ -1.61
MSX1P28360 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC4.99□□□□□ -1.61
MSX1P28360 AC018809.2-201ENST00000602436 3823 ntBASIC4.99□□□□□ -1.61
MSX1P28360 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC4.99□□□□□ -1.61
MSX1P28360 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC4.99□□□□□ -1.61
MSX1P28360 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC4.99□□□□□ -1.61
MSX1P28360 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
MSX1P28360 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
MSX1P28360 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC4.99□□□□□ -1.61
MSX1P28360 Y_RNA.82-201ENST00000363000 102 ntBASIC4.99□□□□□ -1.61
MSX1P28360 Y_RNA.92-201ENST00000363043 102 ntBASIC4.99□□□□□ -1.61
MSX1P28360 Y_RNA.235-201ENST00000364412 102 ntBASIC4.99□□□□□ -1.61
MSX1P28360 Y_RNA.306-201ENST00000365015 102 ntBASIC4.99□□□□□ -1.61
MSX1P28360 Y_RNA.312-201ENST00000365089 102 ntBASIC4.99□□□□□ -1.61
MSX1P28360 Y_RNA.322-201ENST00000365151 102 ntBASIC4.99□□□□□ -1.61
MSX1P28360 RNA5SP187-201ENST00000384400 119 ntBASIC4.99□□□□□ -1.61
MSX1P28360 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
MSX1P28360 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
MSX1P28360 AL133270.1-201ENST00000402635 279 ntBASIC4.99□□□□□ -1.61
MSX1P28360 RN7SKP114-201ENST00000410327 279 ntBASIC4.99□□□□□ -1.61
MSX1P28360 RPL23AP36-201ENST00000413895 458 ntBASIC4.99□□□□□ -1.61
MSX1P28360 BX276092.6-201ENST00000430476 250 ntBASIC4.99□□□□□ -1.61
MSX1P28360 RPL7L1P9-201ENST00000431298 745 ntBASIC4.99□□□□□ -1.61
MSX1P28360 NUTF2P3-201ENST00000448540 384 ntBASIC4.99□□□□□ -1.61
MSX1P28360 BX276092.8-201ENST00000455722 250 ntBASIC4.99□□□□□ -1.61
MSX1P28360 Y_RNA.650-201ENST00000459002 102 ntBASIC4.99□□□□□ -1.61
MSX1P28360 RPS21P4-201ENST00000487122 248 ntBASIC4.99□□□□□ -1.61
MSX1P28360 TRAPPC2P7-201ENST00000509650 231 ntBASIC4.99□□□□□ -1.61
MSX1P28360 AC091912.1-201ENST00000511351 248 ntBASIC4.99□□□□□ -1.61
MSX1P28360 OR7H2P-201ENST00000513483 306 ntBASIC4.99□□□□□ -1.61
MSX1P28360 RNU6-313P-201ENST00000516317 112 ntBASIC4.99□□□□□ -1.61
MSX1P28360 Y_RNA.777-201ENST00000516982 102 ntBASIC4.99□□□□□ -1.61
MSX1P28360 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC4.99□□□□□ -1.61
MSX1P28360 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC4.99□□□□□ -1.61
MSX1P28360 AC060766.3-201ENST00000591442 263 ntBASIC4.99□□□□□ -1.61
MSX1P28360 Y_RNA.771-201ENST00000598668 102 ntBASIC4.99□□□□□ -1.61
MSX1P28360 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
MSX1P28360 AL161798.1-201ENST00000604630 131 ntBASIC4.99□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms