Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC1.62□□□□□ -2.15
HLA-DMBP28068 RNU1-41P-201ENST00000516161 162 ntBASIC1.62□□□□□ -2.15
HLA-DMBP28068 RNU1-48P-201ENST00000516400 162 ntBASIC1.62□□□□□ -2.15
HLA-DMBP28068 BTF3P12-201ENST00000519620 469 ntBASIC1.62□□□□□ -2.15
HLA-DMBP28068 AC118942.1-201ENST00000529674 1035 ntBASIC1.62□□□□□ -2.15
HLA-DMBP28068 AC006518.2-201ENST00000542513 940 ntBASIC1.62□□□□□ -2.15
HLA-DMBP28068 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC1.62□□□□□ -2.15
HLA-DMBP28068 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC1.62□□□□□ -2.15
HLA-DMBP28068 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC1.62□□□□□ -2.15
HLA-DMBP28068 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC1.62□□□□□ -2.15
HLA-DMBP28068 ST20-203ENST00000562759 694 ntAPPRIS P1 TSL 2 BASIC1.62□□□□□ -2.15
HLA-DMBP28068 MIR4648-201ENST00000580107 72 ntBASIC1.62□□□□□ -2.15
HLA-DMBP28068 OR4K7P-201ENST00000580232 945 ntBASIC1.62□□□□□ -2.15
HLA-DMBP28068 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC1.62□□□□□ -2.15
HLA-DMBP28068 AP001429.1-201ENST00000602568 530 ntBASIC1.62□□□□□ -2.15
HLA-DMBP28068 SNORD14A-201ENST00000606526 91 ntBASIC1.62□□□□□ -2.15
HLA-DMBP28068 OR10AB1P-201ENST00000609613 938 ntBASIC1.62□□□□□ -2.15
HLA-DMBP28068 AC005332.10-201ENST00000612725 619 ntBASIC1.62□□□□□ -2.15
HLA-DMBP28068 VN1R74P-201ENST00000613259 503 ntBASIC1.62□□□□□ -2.15
HLA-DMBP28068 AL596245.1-201ENST00000618994 362 ntBASIC1.62□□□□□ -2.15
HLA-DMBP28068 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC1.62□□□□□ -2.15
HLA-DMBP28068 MTND5P6-201ENST00000422338 1798 ntBASIC1.62□□□□□ -2.15
HLA-DMBP28068 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC1.61□□□□□ -2.15
HLA-DMBP28068 RNU6-253P-201ENST00000384730 105 ntBASIC1.61□□□□□ -2.15
HLA-DMBP28068 RNA5SP338-201ENST00000410495 85 ntBASIC1.61□□□□□ -2.15
HLA-DMBP28068 AC023141.4-201ENST00000412031 328 ntBASIC1.61□□□□□ -2.15
HLA-DMBP28068 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC1.61□□□□□ -2.15
HLA-DMBP28068 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC1.61□□□□□ -2.15
HLA-DMBP28068 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC1.61□□□□□ -2.15
HLA-DMBP28068 AL121890.1-201ENST00000435457 205 ntBASIC1.61□□□□□ -2.15
HLA-DMBP28068 UBE2FP3-201ENST00000436366 524 ntBASIC1.61□□□□□ -2.15
HLA-DMBP28068 ARF4P4-201ENST00000439608 520 ntBASIC1.61□□□□□ -2.15
HLA-DMBP28068 MTCO3P43-201ENST00000440974 771 ntBASIC1.61□□□□□ -2.15
HLA-DMBP28068 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC1.61□□□□□ -2.15
HLA-DMBP28068 AC005297.2-201ENST00000450430 606 ntBASIC1.61□□□□□ -2.15
HLA-DMBP28068 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC1.61□□□□□ -2.15
HLA-DMBP28068 MTND2P30-201ENST00000456663 382 ntBASIC1.61□□□□□ -2.15
HLA-DMBP28068 AC097493.1-201ENST00000463958 372 ntBASIC1.61□□□□□ -2.15
HLA-DMBP28068 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC1.61□□□□□ -2.15
HLA-DMBP28068 AC022447.3-201ENST00000506865 495 ntBASIC1.61□□□□□ -2.15
HLA-DMBP28068 AC022447.1-201ENST00000515358 464 ntBASIC1.61□□□□□ -2.15
HLA-DMBP28068 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC1.61□□□□□ -2.15
HLA-DMBP28068 HSPA8P13-201ENST00000523715 472 ntBASIC1.61□□□□□ -2.15
HLA-DMBP28068 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC1.61□□□□□ -2.15
HLA-DMBP28068 AC125611.1-201ENST00000549563 229 ntBASIC1.61□□□□□ -2.15
HLA-DMBP28068 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC1.61□□□□□ -2.15
HLA-DMBP28068 AC026464.5-201ENST00000562497 722 ntBASIC1.61□□□□□ -2.15
HLA-DMBP28068 LINC00557-201ENST00000563184 1279 ntBASIC1.61□□□□□ -2.15
HLA-DMBP28068 LINC02098-202ENST00000609260 554 ntTSL 3 BASIC1.61□□□□□ -2.15
HLA-DMBP28068 AC008498.1-201ENST00000613012 531 ntBASIC1.61□□□□□ -2.15
HLA-DMBP28068 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC1.61□□□□□ -2.15
HLA-DMBP28068 AC068057.2-201ENST00000624047 895 ntBASIC1.61□□□□□ -2.15
HLA-DMBP28068 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC1.61□□□□□ -2.15
HLA-DMBP28068 AK9-203ENST00000368948 2478 ntTSL 5 BASIC1.61□□□□□ -2.15
HLA-DMBP28068 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC1.61□□□□□ -2.15
HLA-DMBP28068 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC1.61□□□□□ -2.15
HLA-DMBP28068 CENPCP1-201ENST00000533085 2578 ntBASIC1.6□□□□□ -2.15
HLA-DMBP28068 FAM133CP-201ENST00000332869 704 ntBASIC1.6□□□□□ -2.15
HLA-DMBP28068 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
HLA-DMBP28068 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC1.6□□□□□ -2.15
HLA-DMBP28068 AL357078.2-201ENST00000416486 427 ntBASIC1.6□□□□□ -2.15
HLA-DMBP28068 AC007560.1-201ENST00000426912 237 ntBASIC1.6□□□□□ -2.15
HLA-DMBP28068 MICF-203ENST00000432679 129 ntBASIC1.6□□□□□ -2.15
HLA-DMBP28068 Z80107.1-201ENST00000436830 412 ntBASIC1.6□□□□□ -2.15
HLA-DMBP28068 OR10R1P-201ENST00000441524 1141 ntBASIC1.6□□□□□ -2.15
HLA-DMBP28068 USP9YP8-201ENST00000441913 500 ntBASIC1.6□□□□□ -2.15
HLA-DMBP28068 AC096638.1-201ENST00000444678 216 ntBASIC1.6□□□□□ -2.15
HLA-DMBP28068 SEPT14P24-201ENST00000447236 180 ntBASIC1.6□□□□□ -2.15
HLA-DMBP28068 MTCYBP11-201ENST00000447254 1109 ntBASIC1.6□□□□□ -2.15
HLA-DMBP28068 MTATP6P7-201ENST00000453315 681 ntBASIC1.6□□□□□ -2.15
HLA-DMBP28068 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC1.6□□□□□ -2.15
HLA-DMBP28068 AC104090.1-201ENST00000506341 1171 ntBASIC1.6□□□□□ -2.15
HLA-DMBP28068 AC023141.11-201ENST00000508864 202 ntBASIC1.6□□□□□ -2.15
HLA-DMBP28068 COL6A4P2-205ENST00000509855 506 ntBASIC1.6□□□□□ -2.15
HLA-DMBP28068 AC121161.1-201ENST00000510606 652 ntBASIC1.6□□□□□ -2.15
HLA-DMBP28068 RNU1-40P-201ENST00000516816 164 ntBASIC1.6□□□□□ -2.15
HLA-DMBP28068 RNU1-97P-201ENST00000516872 164 ntBASIC1.6□□□□□ -2.15
HLA-DMBP28068 RNA5SP364-201ENST00000516938 78 ntBASIC1.6□□□□□ -2.15
HLA-DMBP28068 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC1.6□□□□□ -2.15
HLA-DMBP28068 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC1.6□□□□□ -2.15
HLA-DMBP28068 SNRPGP18-201ENST00000553000 214 ntBASIC1.6□□□□□ -2.15
HLA-DMBP28068 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC1.6□□□□□ -2.15
HLA-DMBP28068 HSPE1P3-201ENST00000559254 309 ntBASIC1.6□□□□□ -2.15
HLA-DMBP28068 AL731537.2-201ENST00000561565 951 ntBASIC1.6□□□□□ -2.15
HLA-DMBP28068 AC104984.5-201ENST00000586878 94 ntBASIC1.6□□□□□ -2.15
HLA-DMBP28068 AC021749.1-201ENST00000604322 607 ntBASIC1.6□□□□□ -2.15
HLA-DMBP28068 AP000238.1-201ENST00000608759 426 ntBASIC1.6□□□□□ -2.15
HLA-DMBP28068 MIR8084-201ENST00000614105 89 ntBASIC1.6□□□□□ -2.15
HLA-DMBP28068 MIR6715A-201ENST00000615929 79 ntBASIC1.6□□□□□ -2.15
HLA-DMBP28068 MIR6132-201ENST00000622083 109 ntBASIC1.6□□□□□ -2.15
HLA-DMBP28068 AC097460.3-201ENST00000623099 442 ntBASIC1.6□□□□□ -2.15
HLA-DMBP28068 AC093591.3-201ENST00000634516 308 ntBASIC1.6□□□□□ -2.15
HLA-DMBP28068 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
HLA-DMBP28068 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC1.6□□□□□ -2.15
HLA-DMBP28068 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC1.6□□□□□ -2.15
HLA-DMBP28068 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC1.6□□□□□ -2.15
HLA-DMBP28068 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC1.59□□□□□ -2.15
HLA-DMBP28068 AC104454.1-201ENST00000421341 1401 ntBASIC1.59□□□□□ -2.15
HLA-DMBP28068 RNA5SP138-201ENST00000365098 114 ntBASIC1.59□□□□□ -2.15
HLA-DMBP28068 U6.112-201ENST00000384129 70 ntBASIC1.59□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 89.9 ms