Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
COL6A1P12109 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
COL6A1P12109 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC4.57□□□□□ -1.68
COL6A1P12109 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
COL6A1P12109 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC4.56□□□□□ -1.68
COL6A1P12109 AC066616.2-201ENST00000559334 1481 ntBASIC4.56□□□□□ -1.68
COL6A1P12109 EOGT-210ENST00000615922 1931 ntBASIC4.56□□□□□ -1.68
COL6A1P12109 AL133383.2-201ENST00000622958 2336 ntBASIC4.56□□□□□ -1.68
COL6A1P12109 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC4.56□□□□□ -1.68
COL6A1P12109 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC4.56□□□□□ -1.68
COL6A1P12109 AL079305.1-201ENST00000623159 3008 ntBASIC4.56□□□□□ -1.68
COL6A1P12109 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
COL6A1P12109 MIR369-201ENST00000362155 70 ntBASIC4.56□□□□□ -1.68
COL6A1P12109 RNU6-552P-201ENST00000362869 119 ntBASIC4.56□□□□□ -1.68
COL6A1P12109 Y_RNA.145-201ENST00000363527 102 ntBASIC4.56□□□□□ -1.68
COL6A1P12109 SNORA62.1-201ENST00000364287 154 ntBASIC4.56□□□□□ -1.68
COL6A1P12109 RNU6-38P-201ENST00000384085 107 ntBASIC4.56□□□□□ -1.68
COL6A1P12109 MIR634-201ENST00000385208 97 ntBASIC4.56□□□□□ -1.68
COL6A1P12109 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
COL6A1P12109 AL359634.1-202ENST00000404721 284 ntBASIC4.56□□□□□ -1.68
COL6A1P12109 MIR1179-201ENST00000408703 91 ntBASIC4.56□□□□□ -1.68
COL6A1P12109 MIR1911-201ENST00000410783 80 ntBASIC4.56□□□□□ -1.68
COL6A1P12109 UBE2Q2P12-201ENST00000414573 204 ntBASIC4.56□□□□□ -1.68
COL6A1P12109 AC006011.1-201ENST00000442758 349 ntBASIC4.56□□□□□ -1.68
COL6A1P12109 MTND1P9-201ENST00000453775 944 ntBASIC4.56□□□□□ -1.68
COL6A1P12109 HMGN2P7-201ENST00000456186 273 ntBASIC4.56□□□□□ -1.68
COL6A1P12109 RNU6-333P-201ENST00000459117 107 ntBASIC4.56□□□□□ -1.68
COL6A1P12109 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC4.56□□□□□ -1.68
COL6A1P12109 AC027575.1-201ENST00000481064 460 ntBASIC4.56□□□□□ -1.68
COL6A1P12109 AC106872.2-201ENST00000494303 480 ntBASIC4.56□□□□□ -1.68
COL6A1P12109 RN7SL323P-201ENST00000494712 295 ntBASIC4.56□□□□□ -1.68
COL6A1P12109 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
COL6A1P12109 SNORA70.14-201ENST00000516205 110 ntBASIC4.56□□□□□ -1.68
COL6A1P12109 RNA5SP503-201ENST00000517047 117 ntBASIC4.56□□□□□ -1.68
COL6A1P12109 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC4.56□□□□□ -1.68
COL6A1P12109 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC4.56□□□□□ -1.68
COL6A1P12109 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC4.56□□□□□ -1.68
COL6A1P12109 OR5B10P-201ENST00000532869 642 ntBASIC4.56□□□□□ -1.68
COL6A1P12109 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC4.56□□□□□ -1.68
COL6A1P12109 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC4.56□□□□□ -1.68
COL6A1P12109 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC4.56□□□□□ -1.68
COL6A1P12109 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC4.56□□□□□ -1.68
COL6A1P12109 AC006116.10-201ENST00000591836 581 ntBASIC4.56□□□□□ -1.68
COL6A1P12109 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC4.56□□□□□ -1.68
COL6A1P12109 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC4.56□□□□□ -1.68
COL6A1P12109 AC025946.2-201ENST00000603398 234 ntBASIC4.56□□□□□ -1.68
COL6A1P12109 SNRPGP17-201ENST00000603780 214 ntBASIC4.56□□□□□ -1.68
COL6A1P12109 DPPA3P3-201ENST00000603842 430 ntBASIC4.56□□□□□ -1.68
COL6A1P12109 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC4.56□□□□□ -1.68
COL6A1P12109 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC4.56□□□□□ -1.68
COL6A1P12109 AC103710.2-201ENST00000609912 942 ntBASIC4.56□□□□□ -1.68
COL6A1P12109 AC084781.2-201ENST00000615568 161 ntBASIC4.56□□□□□ -1.68
COL6A1P12109 uc_338.11-201ENST00000619132 160 ntBASIC4.56□□□□□ -1.68
COL6A1P12109 AL133216.2-202ENST00000634512 349 ntBASIC4.56□□□□□ -1.68
COL6A1P12109 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC4.56□□□□□ -1.68
COL6A1P12109 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC4.56□□□□□ -1.68
COL6A1P12109 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
COL6A1P12109 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC4.56□□□□□ -1.68
COL6A1P12109 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
COL6A1P12109 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC4.55□□□□□ -1.68
COL6A1P12109 AL138713.1-201ENST00000624026 2130 ntBASIC4.55□□□□□ -1.68
COL6A1P12109 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
COL6A1P12109 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC4.55□□□□□ -1.68
COL6A1P12109 MTND4P14-201ENST00000435799 1354 ntBASIC4.55□□□□□ -1.68
COL6A1P12109 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
COL6A1P12109 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
COL6A1P12109 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.55□□□□□ -1.68
COL6A1P12109 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
COL6A1P12109 RNA5SP72-201ENST00000364442 117 ntBASIC4.55□□□□□ -1.68
COL6A1P12109 SNORA33.2-201ENST00000365413 134 ntBASIC4.55□□□□□ -1.68
COL6A1P12109 SNORD6-201ENST00000365444 73 ntBASIC4.55□□□□□ -1.68
COL6A1P12109 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC4.55□□□□□ -1.68
COL6A1P12109 RNU6-474P-201ENST00000384243 107 ntBASIC4.55□□□□□ -1.68
COL6A1P12109 RNU6-903P-201ENST00000391270 109 ntBASIC4.55□□□□□ -1.68
COL6A1P12109 RPL21P17-201ENST00000397467 475 ntBASIC4.55□□□□□ -1.68
COL6A1P12109 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
COL6A1P12109 RPL5P18-201ENST00000406671 891 ntBASIC4.55□□□□□ -1.68
COL6A1P12109 RNU2-39P-201ENST00000410604 198 ntBASIC4.55□□□□□ -1.68
COL6A1P12109 RNU2-15P-201ENST00000410692 191 ntBASIC4.55□□□□□ -1.68
COL6A1P12109 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC4.55□□□□□ -1.68
COL6A1P12109 GPM6BP2-201ENST00000432046 144 ntBASIC4.55□□□□□ -1.68
COL6A1P12109 HMGN2P31-201ENST00000432430 273 ntBASIC4.55□□□□□ -1.68
COL6A1P12109 MTATP6P16-201ENST00000434543 526 ntBASIC4.55□□□□□ -1.68
COL6A1P12109 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC4.55□□□□□ -1.68
COL6A1P12109 GPM6BP1-201ENST00000446387 144 ntBASIC4.55□□□□□ -1.68
COL6A1P12109 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC4.55□□□□□ -1.68
COL6A1P12109 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC4.55□□□□□ -1.68
COL6A1P12109 AC068305.1-201ENST00000497406 726 ntBASIC4.55□□□□□ -1.68
COL6A1P12109 GMPSP1-201ENST00000514075 579 ntBASIC4.55□□□□□ -1.68
COL6A1P12109 RNU6-352P-201ENST00000516908 107 ntBASIC4.55□□□□□ -1.68
COL6A1P12109 Y_RNA.718-201ENST00000517110 102 ntBASIC4.55□□□□□ -1.68
COL6A1P12109 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC4.55□□□□□ -1.68
COL6A1P12109 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC4.55□□□□□ -1.68
COL6A1P12109 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC4.55□□□□□ -1.68
COL6A1P12109 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
COL6A1P12109 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
COL6A1P12109 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC4.55□□□□□ -1.68
COL6A1P12109 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC4.55□□□□□ -1.68
COL6A1P12109 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC4.55□□□□□ -1.68
COL6A1P12109 AL031666.3-201ENST00000609320 1006 ntBASIC4.55□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 87.1 ms