Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 AL158209.2-201ENST00000619266 216 ntBASIC3.21□□□□□ -1.9
CACNA1FO60840 AC243829.7-201ENST00000633081 225 ntBASIC3.21□□□□□ -1.9
CACNA1FO60840 AC099654.13-201ENST00000639774 207 ntBASIC3.21□□□□□ -1.9
CACNA1FO60840 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.21□□□□□ -1.9
CACNA1FO60840 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC3.21□□□□□ -1.9
CACNA1FO60840 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.21□□□□□ -1.9
CACNA1FO60840 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.21□□□□□ -1.9
CACNA1FO60840 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
CACNA1FO60840 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
CACNA1FO60840 MIR449A-201ENST00000362113 91 ntBASIC3.2□□□□□ -1.9
CACNA1FO60840 MIR196B-201ENST00000384852 84 ntBASIC3.2□□□□□ -1.9
CACNA1FO60840 MIR153-1-201ENST00000384914 90 ntBASIC3.2□□□□□ -1.9
CACNA1FO60840 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
CACNA1FO60840 ARF4P3-201ENST00000397387 509 ntBASIC3.2□□□□□ -1.9
CACNA1FO60840 AGR3-202ENST00000402239 563 ntTSL 2 BASIC3.2□□□□□ -1.9
CACNA1FO60840 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC3.2□□□□□ -1.9
CACNA1FO60840 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC3.2□□□□□ -1.9
CACNA1FO60840 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC3.2□□□□□ -1.9
CACNA1FO60840 RPS27AP14-201ENST00000422868 454 ntBASIC3.2□□□□□ -1.9
CACNA1FO60840 AL953862.1-201ENST00000423016 168 ntBASIC3.2□□□□□ -1.9
CACNA1FO60840 TRIM60P3Y-201ENST00000432201 673 ntBASIC3.2□□□□□ -1.9
CACNA1FO60840 RPL23AP33-201ENST00000442301 452 ntBASIC3.2□□□□□ -1.9
CACNA1FO60840 RPL7P36-201ENST00000444633 681 ntBASIC3.2□□□□□ -1.9
CACNA1FO60840 PAXBP1P1-201ENST00000449315 447 ntBASIC3.2□□□□□ -1.9
CACNA1FO60840 CEACAMP4-201ENST00000457676 421 ntBASIC3.2□□□□□ -1.9
CACNA1FO60840 RPL30P9-201ENST00000465586 330 ntBASIC3.2□□□□□ -1.9
CACNA1FO60840 AC096751.1-202ENST00000502691 1067 ntBASIC3.2□□□□□ -1.9
CACNA1FO60840 FABP5P5-201ENST00000515537 406 ntBASIC3.2□□□□□ -1.9
CACNA1FO60840 AF279873.1-201ENST00000523393 313 ntBASIC3.2□□□□□ -1.9
CACNA1FO60840 AP002748.2-201ENST00000528671 348 ntBASIC3.2□□□□□ -1.9
CACNA1FO60840 AP004242.1-201ENST00000533701 349 ntBASIC3.2□□□□□ -1.9
CACNA1FO60840 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC3.2□□□□□ -1.9
CACNA1FO60840 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC3.2□□□□□ -1.9
CACNA1FO60840 AC009063.1-201ENST00000563342 702 ntBASIC3.2□□□□□ -1.9
CACNA1FO60840 AC103710.1-201ENST00000610003 901 ntBASIC3.2□□□□□ -1.9
CACNA1FO60840 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
CACNA1FO60840 AL359693.1-201ENST00000614959 2407 ntBASIC3.2□□□□□ -1.9
CACNA1FO60840 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
CACNA1FO60840 AC073544.1-201ENST00000600110 1595 ntBASIC3.2□□□□□ -1.9
CACNA1FO60840 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
CACNA1FO60840 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC3.2□□□□□ -1.9
CACNA1FO60840 RNU4-91P-201ENST00000364778 135 ntBASIC3.2□□□□□ -1.9
CACNA1FO60840 RNA5SP167-201ENST00000365461 116 ntBASIC3.2□□□□□ -1.9
CACNA1FO60840 SNORA40.3-201ENST00000390964 122 ntBASIC3.2□□□□□ -1.9
CACNA1FO60840 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC3.2□□□□□ -1.9
CACNA1FO60840 RPL36AP6-201ENST00000435770 321 ntBASIC3.2□□□□□ -1.9
CACNA1FO60840 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC3.2□□□□□ -1.9
CACNA1FO60840 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC3.2□□□□□ -1.9
CACNA1FO60840 FGF7P6-202ENST00000451282 293 ntBASIC3.2□□□□□ -1.9
CACNA1FO60840 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC3.2□□□□□ -1.9
CACNA1FO60840 ARPC3P2-201ENST00000457786 533 ntBASIC3.2□□□□□ -1.9
CACNA1FO60840 AP000797.1-201ENST00000478870 387 ntBASIC3.2□□□□□ -1.9
CACNA1FO60840 OR4G11P-201ENST00000492842 939 ntBASIC3.2□□□□□ -1.9
CACNA1FO60840 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC3.2□□□□□ -1.9
CACNA1FO60840 RNU6-1261P-201ENST00000517194 104 ntBASIC3.2□□□□□ -1.9
CACNA1FO60840 AC016957.1-201ENST00000534895 309 ntBASIC3.2□□□□□ -1.9
CACNA1FO60840 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.2□□□□□ -1.9
CACNA1FO60840 MIR548AB-201ENST00000584917 84 ntBASIC3.2□□□□□ -1.9
CACNA1FO60840 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC3.2□□□□□ -1.9
CACNA1FO60840 RPL23AP92-201ENST00000603609 255 ntBASIC3.2□□□□□ -1.9
CACNA1FO60840 LARP7P1-201ENST00000605576 316 ntBASIC3.2□□□□□ -1.9
CACNA1FO60840 MIR6817-201ENST00000615588 66 ntBASIC3.2□□□□□ -1.9
CACNA1FO60840 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC3.2□□□□□ -1.9
CACNA1FO60840 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.2□□□□□ -1.9
CACNA1FO60840 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
CACNA1FO60840 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CACNA1FO60840 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC3.19□□□□□ -1.9
CACNA1FO60840 AC011978.2-201ENST00000569835 2054 ntBASIC3.19□□□□□ -1.9
CACNA1FO60840 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.19□□□□□ -1.9
CACNA1FO60840 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CACNA1FO60840 Y_RNA.97-201ENST00000363094 102 ntBASIC3.19□□□□□ -1.9
CACNA1FO60840 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC3.19□□□□□ -1.9
CACNA1FO60840 Y_RNA.402-201ENST00000383972 102 ntBASIC3.19□□□□□ -1.9
CACNA1FO60840 RNU6-301P-201ENST00000384277 107 ntBASIC3.19□□□□□ -1.9
CACNA1FO60840 MIR181A1-201ENST00000385026 110 ntBASIC3.19□□□□□ -1.9
CACNA1FO60840 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
CACNA1FO60840 SDCBPP3-201ENST00000419629 891 ntBASIC3.19□□□□□ -1.9
CACNA1FO60840 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC3.19□□□□□ -1.9
CACNA1FO60840 AL596276.1-201ENST00000434465 418 ntBASIC3.19□□□□□ -1.9
CACNA1FO60840 PGBD4P3-201ENST00000440731 581 ntBASIC3.19□□□□□ -1.9
CACNA1FO60840 GAPDHP17-201ENST00000449858 1001 ntBASIC3.19□□□□□ -1.9
CACNA1FO60840 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC3.19□□□□□ -1.9
CACNA1FO60840 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC3.19□□□□□ -1.9
CACNA1FO60840 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC3.19□□□□□ -1.9
CACNA1FO60840 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC3.19□□□□□ -1.9
CACNA1FO60840 AC008549.1-201ENST00000512900 643 ntBASIC3.19□□□□□ -1.9
CACNA1FO60840 AC114781.4-201ENST00000513707 639 ntBASIC3.19□□□□□ -1.9
CACNA1FO60840 RN7SKP298-201ENST00000515950 94 ntBASIC3.19□□□□□ -1.9
CACNA1FO60840 RNA5SP148-201ENST00000516527 94 ntBASIC3.19□□□□□ -1.9
CACNA1FO60840 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC3.19□□□□□ -1.9
CACNA1FO60840 HIGD1AP6-201ENST00000521833 279 ntBASIC3.19□□□□□ -1.9
CACNA1FO60840 COX6B1P6-201ENST00000522347 255 ntBASIC3.19□□□□□ -1.9
CACNA1FO60840 AP003122.3-201ENST00000526316 255 ntBASIC3.19□□□□□ -1.9
CACNA1FO60840 CBX3P7-201ENST00000532876 502 ntBASIC3.19□□□□□ -1.9
CACNA1FO60840 AC137800.2-201ENST00000574375 120 ntBASIC3.19□□□□□ -1.9
CACNA1FO60840 AC006254.3-201ENST00000603353 884 ntBASIC3.19□□□□□ -1.9
CACNA1FO60840 AC013412.1-201ENST00000610687 192 ntBASIC3.19□□□□□ -1.9
CACNA1FO60840 AL157786.1-207ENST00000627771 695 ntBASIC3.19□□□□□ -1.9
CACNA1FO60840 U6.101-201ENST00000637707 76 ntBASIC3.19□□□□□ -1.9
CACNA1FO60840 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 97.6 ms