Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 MTND4P35-201ENST00000604257 1375 ntBASIC2.38□□□□□ -2.03
LSM1O15116 GNG5P1-201ENST00000255500 204 ntBASIC2.38□□□□□ -2.03
LSM1O15116 RNU6-560P-201ENST00000364007 108 ntBASIC2.38□□□□□ -2.03
LSM1O15116 RNU6-301P-201ENST00000384277 107 ntBASIC2.38□□□□□ -2.03
LSM1O15116 RNU6-750P-201ENST00000390946 107 ntBASIC2.38□□□□□ -2.03
LSM1O15116 SNORA40.4-201ENST00000390971 128 ntBASIC2.38□□□□□ -2.03
LSM1O15116 AL139039.1-201ENST00000401900 692 ntBASIC2.38□□□□□ -2.03
LSM1O15116 RNU4-72P-201ENST00000410754 173 ntBASIC2.38□□□□□ -2.03
LSM1O15116 HMGB1P49-201ENST00000418882 569 ntBASIC2.38□□□□□ -2.03
LSM1O15116 AC007919.1-201ENST00000429380 217 ntBASIC2.38□□□□□ -2.03
LSM1O15116 RPL23AP83-201ENST00000434984 473 ntBASIC2.38□□□□□ -2.03
LSM1O15116 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC2.38□□□□□ -2.03
LSM1O15116 RPS15AP5-201ENST00000436276 388 ntBASIC2.38□□□□□ -2.03
LSM1O15116 ZNF886P-201ENST00000450781 723 ntBASIC2.38□□□□□ -2.03
LSM1O15116 RPL12P25-201ENST00000455592 494 ntBASIC2.38□□□□□ -2.03
LSM1O15116 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC2.38□□□□□ -2.03
LSM1O15116 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC2.38□□□□□ -2.03
LSM1O15116 RNA5SP291-201ENST00000517222 105 ntBASIC2.38□□□□□ -2.03
LSM1O15116 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC2.38□□□□□ -2.03
LSM1O15116 LRRC6P1-201ENST00000532188 885 ntBASIC2.38□□□□□ -2.03
LSM1O15116 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC2.38□□□□□ -2.03
LSM1O15116 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC2.38□□□□□ -2.03
LSM1O15116 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC2.38□□□□□ -2.03
LSM1O15116 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC2.38□□□□□ -2.03
LSM1O15116 BNIP3P26-201ENST00000600827 554 ntBASIC2.38□□□□□ -2.03
LSM1O15116 AL589743.7-201ENST00000612637 233 ntBASIC2.38□□□□□ -2.03
LSM1O15116 TUG1_2.1-201ENST00000614234 87 ntBASIC2.38□□□□□ -2.03
LSM1O15116 AC010133.1-201ENST00000615809 842 ntBASIC2.38□□□□□ -2.03
LSM1O15116 AC068057.2-201ENST00000624047 895 ntBASIC2.38□□□□□ -2.03
LSM1O15116 U2.21-201ENST00000637295 81 ntBASIC2.38□□□□□ -2.03
LSM1O15116 LINC02211-204ENST00000642024 1070 ntBASIC2.38□□□□□ -2.03
LSM1O15116 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.38□□□□□ -2.03
LSM1O15116 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.38□□□□□ -2.03
LSM1O15116 ZNF833P-201ENST00000424938 1494 ntBASIC2.38□□□□□ -2.03
LSM1O15116 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
LSM1O15116 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.37□□□□□ -2.03
LSM1O15116 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
LSM1O15116 OR5J1P-201ENST00000313544 939 ntBASIC2.37□□□□□ -2.03
LSM1O15116 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC2.37□□□□□ -2.03
LSM1O15116 RNU6-884P-201ENST00000363889 107 ntBASIC2.37□□□□□ -2.03
LSM1O15116 MIR483-201ENST00000385070 76 ntBASIC2.37□□□□□ -2.03
LSM1O15116 SNORA48.2-201ENST00000390926 124 ntBASIC2.37□□□□□ -2.03
LSM1O15116 AC096664.2-201ENST00000411843 406 ntBASIC2.37□□□□□ -2.03
LSM1O15116 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC2.37□□□□□ -2.03
LSM1O15116 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC2.37□□□□□ -2.03
LSM1O15116 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.37□□□□□ -2.03
LSM1O15116 BPY2DP-201ENST00000422208 265 ntBASIC2.37□□□□□ -2.03
LSM1O15116 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC2.37□□□□□ -2.03
LSM1O15116 IFNA11P-201ENST00000446352 526 ntBASIC2.37□□□□□ -2.03
LSM1O15116 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC2.37□□□□□ -2.03
LSM1O15116 AC104563.1-201ENST00000476147 376 ntBASIC2.37□□□□□ -2.03
LSM1O15116 RPL23AP45-201ENST00000476406 468 ntBASIC2.37□□□□□ -2.03
LSM1O15116 AC098591.2-201ENST00000510152 315 ntBASIC2.37□□□□□ -2.03
LSM1O15116 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC2.37□□□□□ -2.03
LSM1O15116 RNU6-840P-201ENST00000517275 65 ntBASIC2.37□□□□□ -2.03
LSM1O15116 AC109329.2-201ENST00000519658 482 ntBASIC2.37□□□□□ -2.03
LSM1O15116 AC021451.1-201ENST00000523498 1129 ntBASIC2.37□□□□□ -2.03
LSM1O15116 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC2.37□□□□□ -2.03
LSM1O15116 ZKSCAN7P1-201ENST00000543668 673 ntBASIC2.37□□□□□ -2.03
LSM1O15116 AC074050.1-201ENST00000563247 211 ntBASIC2.37□□□□□ -2.03
LSM1O15116 AL512347.1-201ENST00000566420 503 ntBASIC2.37□□□□□ -2.03
LSM1O15116 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC2.37□□□□□ -2.03
LSM1O15116 SNORD53-201ENST00000579969 78 ntBASIC2.37□□□□□ -2.03
LSM1O15116 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC2.37□□□□□ -2.03
LSM1O15116 VN1R90P-201ENST00000595717 726 ntBASIC2.37□□□□□ -2.03
LSM1O15116 MTND4LP5-201ENST00000605152 292 ntBASIC2.37□□□□□ -2.03
LSM1O15116 AC239868.4-201ENST00000608318 671 ntBASIC2.37□□□□□ -2.03
LSM1O15116 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC2.37□□□□□ -2.03
LSM1O15116 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC2.37□□□□□ -2.03
LSM1O15116 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
LSM1O15116 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC2.37□□□□□ -2.03
LSM1O15116 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC2.36□□□□□ -2.03
LSM1O15116 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
LSM1O15116 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.36□□□□□ -2.03
LSM1O15116 SNORA41-201ENST00000384675 132 ntBASIC2.36□□□□□ -2.03
LSM1O15116 MIR27B-201ENST00000385129 97 ntBASIC2.36□□□□□ -2.03
LSM1O15116 MIR34A-201ENST00000385130 110 ntBASIC2.36□□□□□ -2.03
LSM1O15116 RNU2-52P-201ENST00000410680 190 ntBASIC2.36□□□□□ -2.03
LSM1O15116 RNU6-516P-201ENST00000411381 104 ntBASIC2.36□□□□□ -2.03
LSM1O15116 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC2.36□□□□□ -2.03
LSM1O15116 USP9YP13-201ENST00000417797 480 ntBASIC2.36□□□□□ -2.03
LSM1O15116 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC2.36□□□□□ -2.03
LSM1O15116 AC098826.1-201ENST00000433943 471 ntBASIC2.36□□□□□ -2.03
LSM1O15116 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC2.36□□□□□ -2.03
LSM1O15116 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC2.36□□□□□ -2.03
LSM1O15116 AC097462.2-201ENST00000504623 481 ntBASIC2.36□□□□□ -2.03
LSM1O15116 RNU6-150P-201ENST00000516237 95 ntBASIC2.36□□□□□ -2.03
LSM1O15116 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC2.36□□□□□ -2.03
LSM1O15116 AC023538.1-201ENST00000534576 736 ntBASIC2.36□□□□□ -2.03
LSM1O15116 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC2.36□□□□□ -2.03
LSM1O15116 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC2.36□□□□□ -2.03
LSM1O15116 AC023824.2-201ENST00000566185 400 ntBASIC2.36□□□□□ -2.03
LSM1O15116 UBE2L4-201ENST00000587688 464 ntBASIC2.36□□□□□ -2.03
LSM1O15116 VN1R92P-201ENST00000598511 928 ntBASIC2.36□□□□□ -2.03
LSM1O15116 AC005000.2-201ENST00000605468 310 ntBASIC2.36□□□□□ -2.03
LSM1O15116 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC2.36□□□□□ -2.03
LSM1O15116 AC005332.10-201ENST00000612725 619 ntBASIC2.36□□□□□ -2.03
LSM1O15116 AL138955.1-201ENST00000622881 1040 ntBASIC2.36□□□□□ -2.03
LSM1O15116 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC2.36□□□□□ -2.03
LSM1O15116 AL158801.5-201ENST00000623123 465 ntBASIC2.36□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 120.3 ms