Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
CBX4O00257 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC4.29□□□□□ -1.72
CBX4O00257 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
CBX4O00257 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.29□□□□□ -1.72
CBX4O00257 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC4.29□□□□□ -1.72
CBX4O00257 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
CBX4O00257 RNU6-715P-201ENST00000365204 103 ntBASIC4.29□□□□□ -1.72
CBX4O00257 RNA5SP167-201ENST00000365461 116 ntBASIC4.29□□□□□ -1.72
CBX4O00257 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC4.29□□□□□ -1.72
CBX4O00257 Y_RNA.384-201ENST00000383909 102 ntBASIC4.29□□□□□ -1.72
CBX4O00257 MIR607-201ENST00000385241 96 ntBASIC4.29□□□□□ -1.72
CBX4O00257 AL590704.1-201ENST00000402856 794 ntBASIC4.29□□□□□ -1.72
CBX4O00257 BX682237.1-201ENST00000415016 335 ntBASIC4.29□□□□□ -1.72
CBX4O00257 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC4.29□□□□□ -1.72
CBX4O00257 RPL7P10-201ENST00000417407 739 ntBASIC4.29□□□□□ -1.72
CBX4O00257 BX842559.1-201ENST00000419615 532 ntBASIC4.29□□□□□ -1.72
CBX4O00257 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC4.29□□□□□ -1.72
CBX4O00257 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC4.29□□□□□ -1.72
CBX4O00257 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC4.29□□□□□ -1.72
CBX4O00257 AF228730.2-201ENST00000438784 848 ntBASIC4.29□□□□□ -1.72
CBX4O00257 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC4.29□□□□□ -1.72
CBX4O00257 GAS5-223ENST00000452197 483 ntTSL 3 BASIC4.29□□□□□ -1.72
CBX4O00257 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC4.29□□□□□ -1.72
CBX4O00257 RN7SL132P-201ENST00000478131 296 ntBASIC4.29□□□□□ -1.72
CBX4O00257 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC4.29□□□□□ -1.72
CBX4O00257 MTCO1P29-201ENST00000496868 288 ntBASIC4.29□□□□□ -1.72
CBX4O00257 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC4.29□□□□□ -1.72
CBX4O00257 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC4.29□□□□□ -1.72
CBX4O00257 LEF1-218ENST00000512172 598 ntTSL 2 BASIC4.29□□□□□ -1.72
CBX4O00257 RNU6-864P-201ENST00000516256 108 ntBASIC4.29□□□□□ -1.72
CBX4O00257 SNORA67.7-201ENST00000516664 135 ntBASIC4.29□□□□□ -1.72
CBX4O00257 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC4.29□□□□□ -1.72
CBX4O00257 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC4.29□□□□□ -1.72
CBX4O00257 MEG8-215ENST00000555354 469 ntTSL 3 BASIC4.29□□□□□ -1.72
CBX4O00257 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC4.29□□□□□ -1.72
CBX4O00257 RPL23AP87-202ENST00000573039 466 ntBASIC4.29□□□□□ -1.72
CBX4O00257 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC4.29□□□□□ -1.72
CBX4O00257 RN7SL600P-201ENST00000581811 299 ntBASIC4.29□□□□□ -1.72
CBX4O00257 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC4.29□□□□□ -1.72
CBX4O00257 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC4.29□□□□□ -1.72
CBX4O00257 AC107294.1-201ENST00000609524 467 ntBASIC4.29□□□□□ -1.72
CBX4O00257 AL158196.1-201ENST00000616786 434 ntBASIC4.29□□□□□ -1.72
CBX4O00257 AC103705.1-201ENST00000619013 241 ntBASIC4.29□□□□□ -1.72
CBX4O00257 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC4.29□□□□□ -1.72
CBX4O00257 AC006026.1-201ENST00000444025 1803 ntBASIC4.29□□□□□ -1.72
CBX4O00257 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
CBX4O00257 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC4.29□□□□□ -1.72
CBX4O00257 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.29□□□□□ -1.72
CBX4O00257 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CBX4O00257 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CBX4O00257 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
CBX4O00257 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
CBX4O00257 RNA5SP52-201ENST00000362448 134 ntBASIC4.28□□□□□ -1.72
CBX4O00257 RNU4-79P-201ENST00000362764 141 ntBASIC4.28□□□□□ -1.72
CBX4O00257 Y_RNA.167-201ENST00000363735 109 ntBASIC4.28□□□□□ -1.72
CBX4O00257 RNA5SP189-201ENST00000364920 115 ntBASIC4.28□□□□□ -1.72
CBX4O00257 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
CBX4O00257 Y_RNA.399-201ENST00000383955 105 ntBASIC4.28□□□□□ -1.72
CBX4O00257 PPIAP31-201ENST00000405422 495 ntBASIC4.28□□□□□ -1.72
CBX4O00257 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC4.28□□□□□ -1.72
CBX4O00257 AL451062.2-201ENST00000427515 271 ntBASIC4.28□□□□□ -1.72
CBX4O00257 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC4.28□□□□□ -1.72
CBX4O00257 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC4.28□□□□□ -1.72
CBX4O00257 HMGB3P11-201ENST00000440127 604 ntBASIC4.28□□□□□ -1.72
CBX4O00257 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC4.28□□□□□ -1.72
CBX4O00257 AC008264.1-201ENST00000447612 367 ntBASIC4.28□□□□□ -1.72
CBX4O00257 AL121877.1-201ENST00000453704 622 ntBASIC4.28□□□□□ -1.72
CBX4O00257 RNU7-66P-201ENST00000459469 62 ntBASIC4.28□□□□□ -1.72
CBX4O00257 AP000873.1-201ENST00000463987 400 ntBASIC4.28□□□□□ -1.72
CBX4O00257 RPL21P93-201ENST00000480465 489 ntBASIC4.28□□□□□ -1.72
CBX4O00257 RPS15AP34-201ENST00000487776 387 ntBASIC4.28□□□□□ -1.72
CBX4O00257 AC005921.1-201ENST00000510589 286 ntBASIC4.28□□□□□ -1.72
CBX4O00257 AC104136.1-201ENST00000512969 394 ntBASIC4.28□□□□□ -1.72
CBX4O00257 RNU6-143P-201ENST00000516942 93 ntBASIC4.28□□□□□ -1.72
CBX4O00257 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC4.28□□□□□ -1.72
CBX4O00257 AC090136.1-201ENST00000520009 240 ntBASIC4.28□□□□□ -1.72
CBX4O00257 AP001804.3-201ENST00000525146 880 ntBASIC4.28□□□□□ -1.72
CBX4O00257 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC4.28□□□□□ -1.72
CBX4O00257 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC4.28□□□□□ -1.72
CBX4O00257 AC022655.2-201ENST00000577280 318 ntBASIC4.28□□□□□ -1.72
CBX4O00257 MIR3158-1-201ENST00000583596 81 ntBASIC4.28□□□□□ -1.72
CBX4O00257 MIR15A-201ENST00000607334 83 ntBASIC4.28□□□□□ -1.72
CBX4O00257 RNU4-89P-201ENST00000607443 133 ntBASIC4.28□□□□□ -1.72
CBX4O00257 uc_338.15-201ENST00000615470 191 ntBASIC4.28□□□□□ -1.72
CBX4O00257 AC034229.5-201ENST00000624258 185 ntBASIC4.28□□□□□ -1.72
CBX4O00257 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
CBX4O00257 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
CBX4O00257 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
CBX4O00257 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC4.27□□□□□ -1.73
CBX4O00257 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
CBX4O00257 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
CBX4O00257 AL592182.3-201ENST00000642132 3304 ntBASIC4.27□□□□□ -1.73
CBX4O00257 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC4.27□□□□□ -1.73
CBX4O00257 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
CBX4O00257 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
CBX4O00257 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
CBX4O00257 UBE2L2-201ENST00000254302 429 ntBASIC4.27□□□□□ -1.73
CBX4O00257 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
CBX4O00257 SNORA16.2-201ENST00000390991 127 ntBASIC4.27□□□□□ -1.73
CBX4O00257 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 134.3 ms