Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC7.17□□□□□ -1.26
CCDC61Q9Y6R9 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
CCDC61Q9Y6R9 DDX6-208ENST00000620157 6152 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
CCDC61Q9Y6R9 RNA5SP361-201ENST00000362686 118 ntBASIC7.17□□□□□ -1.26
CCDC61Q9Y6R9 SNORD73B-201ENST00000364394 72 ntBASIC7.17□□□□□ -1.26
CCDC61Q9Y6R9 RNY4P30-201ENST00000410216 95 ntBASIC7.17□□□□□ -1.26
CCDC61Q9Y6R9 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC7.17□□□□□ -1.26
CCDC61Q9Y6R9 MAP1LC3BP1-201ENST00000417653 379 ntBASIC7.17□□□□□ -1.26
CCDC61Q9Y6R9 RPL7AP25-201ENST00000423357 805 ntBASIC7.17□□□□□ -1.26
CCDC61Q9Y6R9 TEX41-205ENST00000431734 529 ntTSL 4 BASIC7.17□□□□□ -1.26
CCDC61Q9Y6R9 NDUFB4P8-201ENST00000435351 367 ntBASIC7.17□□□□□ -1.26
CCDC61Q9Y6R9 AC009296.1-201ENST00000443146 155 ntBASIC7.17□□□□□ -1.26
CCDC61Q9Y6R9 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC7.17□□□□□ -1.26
CCDC61Q9Y6R9 RPL31P61-201ENST00000496160 376 ntBASIC7.17□□□□□ -1.26
CCDC61Q9Y6R9 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC7.17□□□□□ -1.26
CCDC61Q9Y6R9 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC7.17□□□□□ -1.26
CCDC61Q9Y6R9 SNORA70.11-201ENST00000515987 138 ntBASIC7.17□□□□□ -1.26
CCDC61Q9Y6R9 RNU6-1114P-201ENST00000516022 107 ntBASIC7.17□□□□□ -1.26
CCDC61Q9Y6R9 SNORA70.13-201ENST00000516116 138 ntBASIC7.17□□□□□ -1.26
CCDC61Q9Y6R9 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC7.17□□□□□ -1.26
CCDC61Q9Y6R9 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC7.17□□□□□ -1.26
CCDC61Q9Y6R9 AC021006.3-201ENST00000530771 192 ntBASIC7.17□□□□□ -1.26
CCDC61Q9Y6R9 AC022968.1-201ENST00000567372 442 ntBASIC7.17□□□□□ -1.26
CCDC61Q9Y6R9 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
CCDC61Q9Y6R9 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC7.17□□□□□ -1.26
CCDC61Q9Y6R9 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC7.17□□□□□ -1.26
CCDC61Q9Y6R9 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
CCDC61Q9Y6R9 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
CCDC61Q9Y6R9 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC7.17□□□□□ -1.26
CCDC61Q9Y6R9 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC7.17□□□□□ -1.26
CCDC61Q9Y6R9 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC7.17□□□□□ -1.26
CCDC61Q9Y6R9 CACNA2D3-210ENST00000490478 3557 ntAPPRIS ALT2 TSL 1 (best) BASIC7.16□□□□□ -1.26
CCDC61Q9Y6R9 ABCB11-201ENST00000263817 4775 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
CCDC61Q9Y6R9 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC7.16□□□□□ -1.26
CCDC61Q9Y6R9 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC7.16□□□□□ -1.26
CCDC61Q9Y6R9 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC7.16□□□□□ -1.26
CCDC61Q9Y6R9 SGO2-201ENST00000357799 4214 ntAPPRIS P2 TSL 1 (best) BASIC7.16□□□□□ -1.26
CCDC61Q9Y6R9 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
CCDC61Q9Y6R9 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
CCDC61Q9Y6R9 STK3-216ENST00000523601 3107 ntTSL 2 BASIC7.16□□□□□ -1.26
CCDC61Q9Y6R9 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
CCDC61Q9Y6R9 Y_RNA.525-201ENST00000384570 113 ntBASIC7.16□□□□□ -1.26
CCDC61Q9Y6R9 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC7.16□□□□□ -1.26
CCDC61Q9Y6R9 AC063976.4-201ENST00000421971 163 ntBASIC7.16□□□□□ -1.26
CCDC61Q9Y6R9 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC7.16□□□□□ -1.26
CCDC61Q9Y6R9 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC7.16□□□□□ -1.26
CCDC61Q9Y6R9 CREM-238ENST00000488741 651 ntTSL 2 BASIC7.16□□□□□ -1.26
CCDC61Q9Y6R9 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC7.16□□□□□ -1.26
CCDC61Q9Y6R9 AL139395.1-201ENST00000603662 160 ntBASIC7.16□□□□□ -1.26
CCDC61Q9Y6R9 MPHOSPH9-220ENST00000606320 6351 ntAPPRIS P2 TSL 5 BASIC7.16□□□□□ -1.26
CCDC61Q9Y6R9 RMST_6.1-201ENST00000611980 203 ntBASIC7.16□□□□□ -1.26
CCDC61Q9Y6R9 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC7.16□□□□□ -1.26
CCDC61Q9Y6R9 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC7.16□□□□□ -1.26
CCDC61Q9Y6R9 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC7.16□□□□□ -1.26
CCDC61Q9Y6R9 LMO3-225ENST00000541295 3498 ntTSL 2 BASIC7.16□□□□□ -1.26
CCDC61Q9Y6R9 CNTN3-201ENST00000263665 4948 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
CCDC61Q9Y6R9 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
CCDC61Q9Y6R9 CACNB4-229ENST00000636617 5757 ntTSL 5 BASIC7.16□□□□□ -1.26
CCDC61Q9Y6R9 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
CCDC61Q9Y6R9 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC7.15□□□□□ -1.26
CCDC61Q9Y6R9 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
CCDC61Q9Y6R9 MAX-203ENST00000341653 330 ntTSL 2 BASIC7.15□□□□□ -1.26
CCDC61Q9Y6R9 RNA5SP428-201ENST00000365129 132 ntBASIC7.15□□□□□ -1.26
CCDC61Q9Y6R9 MIR92A2-201ENST00000385299 75 ntBASIC7.15□□□□□ -1.26
CCDC61Q9Y6R9 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC7.15□□□□□ -1.26
CCDC61Q9Y6R9 AC005042.3-201ENST00000453230 174 ntBASIC7.15□□□□□ -1.26
CCDC61Q9Y6R9 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC7.15□□□□□ -1.26
CCDC61Q9Y6R9 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC7.15□□□□□ -1.26
CCDC61Q9Y6R9 COX6B1P5-201ENST00000509843 249 ntBASIC7.15□□□□□ -1.26
CCDC61Q9Y6R9 RNU6-191P-201ENST00000516295 94 ntBASIC7.15□□□□□ -1.26
CCDC61Q9Y6R9 RNU6-143P-201ENST00000516942 93 ntBASIC7.15□□□□□ -1.26
CCDC61Q9Y6R9 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC7.15□□□□□ -1.26
CCDC61Q9Y6R9 AP001328.1-201ENST00000528550 176 ntBASIC7.15□□□□□ -1.26
CCDC61Q9Y6R9 NDUFA5P6-201ENST00000542110 379 ntBASIC7.15□□□□□ -1.26
CCDC61Q9Y6R9 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC7.15□□□□□ -1.26
CCDC61Q9Y6R9 MIR1273C-201ENST00000578669 77 ntBASIC7.15□□□□□ -1.26
CCDC61Q9Y6R9 MIR4737-201ENST00000583979 81 ntBASIC7.15□□□□□ -1.26
CCDC61Q9Y6R9 AC010928.2-201ENST00000588017 287 ntBASIC7.15□□□□□ -1.26
CCDC61Q9Y6R9 U7.2-201ENST00000607576 63 ntBASIC7.15□□□□□ -1.26
CCDC61Q9Y6R9 MIR6810-201ENST00000622701 70 ntBASIC7.15□□□□□ -1.26
CCDC61Q9Y6R9 AC005154.1-203ENST00000626245 451 ntTSL 5 BASIC7.15□□□□□ -1.26
CCDC61Q9Y6R9 SCARNA4-201ENST00000629045 128 ntBASIC7.15□□□□□ -1.26
CCDC61Q9Y6R9 CYLD-203ENST00000427738 8503 ntTSL 5 BASIC7.15□□□□□ -1.27
CCDC61Q9Y6R9 NF1-202ENST00000358273 12425 ntAPPRIS ALT1 TSL 1 (best) BASIC7.15□□□□□ -1.27
CCDC61Q9Y6R9 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC7.15□□□□□ -1.27
CCDC61Q9Y6R9 ATF7IP-201ENST00000261168 8878 ntAPPRIS P3 TSL 5 BASIC7.15□□□□□ -1.27
CCDC61Q9Y6R9 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC7.15□□□□□ -1.27
CCDC61Q9Y6R9 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC7.14□□□□□ -1.27
CCDC61Q9Y6R9 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC7.14□□□□□ -1.27
CCDC61Q9Y6R9 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC7.14□□□□□ -1.27
CCDC61Q9Y6R9 APOL6-201ENST00000409652 10121 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
CCDC61Q9Y6R9 ZNF532-201ENST00000336078 6696 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
CCDC61Q9Y6R9 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC7.14□□□□□ -1.27
CCDC61Q9Y6R9 AC092681.1-201ENST00000297369 291 ntBASIC7.14□□□□□ -1.27
CCDC61Q9Y6R9 RNU6-1272P-201ENST00000362776 107 ntBASIC7.14□□□□□ -1.27
CCDC61Q9Y6R9 Y_RNA.116-201ENST00000363292 103 ntBASIC7.14□□□□□ -1.27
CCDC61Q9Y6R9 RNU6-395P-201ENST00000365662 106 ntBASIC7.14□□□□□ -1.27
CCDC61Q9Y6R9 MDM4-203ENST00000367182 10073 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
CCDC61Q9Y6R9 RPL31P2-201ENST00000413849 377 ntBASIC7.14□□□□□ -1.27
CCDC61Q9Y6R9 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC7.14□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms