Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 PCDH15-231ENST00000617271 6425 ntAPPRIS P3 TSL 5 BASIC9.49□□□□□ -0.89
SENP3Q9H4L4 FOXJ3-203ENST00000372571 4468 ntTSL 2 BASIC9.48□□□□□ -0.89
SENP3Q9H4L4 STT3A-214ENST00000531491 2160 ntTSL 2 BASIC9.48□□□□□ -0.89
SENP3Q9H4L4 NAV2-202ENST00000360655 10667 ntAPPRIS ALT2 TSL 1 (best) BASIC9.48□□□□□ -0.89
SENP3Q9H4L4 SOAT1-201ENST00000367619 6835 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
SENP3Q9H4L4 BOLL-204ENST00000430004 2987 ntTSL 2 BASIC9.48□□□□□ -0.89
SENP3Q9H4L4 OR4K17-203ENST00000641633 5068 ntAPPRIS P1 BASIC9.48□□□□□ -0.89
SENP3Q9H4L4 SPECC1L-207ENST00000541492 3525 ntTSL 2 BASIC9.48□□□□□ -0.89
SENP3Q9H4L4 PIGN-207ENST00000586566 3891 ntTSL 5 BASIC9.48□□□□□ -0.89
SENP3Q9H4L4 MSL2-202ENST00000434835 2272 ntTSL 2 BASIC9.48□□□□□ -0.89
SENP3Q9H4L4 TBC1D32-201ENST00000275159 4431 ntAPPRIS ALT2 TSL 5 BASIC9.48□□□□□ -0.89
SENP3Q9H4L4 LMO7-203ENST00000357063 8237 ntAPPRIS ALT2 TSL 5 BASIC9.48□□□□□ -0.89
SENP3Q9H4L4 CLVS1-203ENST00000518592 2880 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
SENP3Q9H4L4 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
SENP3Q9H4L4 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
SENP3Q9H4L4 CHD2-215ENST00000628375 3202 ntTSL 5 BASIC9.48□□□□□ -0.89
SENP3Q9H4L4 RNU6-661P-201ENST00000362409 107 ntBASIC9.48□□□□□ -0.89
SENP3Q9H4L4 SNORA74A-201ENST00000364089 198 ntBASIC9.48□□□□□ -0.89
SENP3Q9H4L4 Y_RNA.377-201ENST00000365644 108 ntBASIC9.48□□□□□ -0.89
SENP3Q9H4L4 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC9.48□□□□□ -0.89
SENP3Q9H4L4 AC009804.1-201ENST00000400949 179 ntBASIC9.48□□□□□ -0.89
SENP3Q9H4L4 OR2AT2P-201ENST00000413438 905 ntBASIC9.48□□□□□ -0.89
SENP3Q9H4L4 AC007738.1-201ENST00000413892 348 ntBASIC9.48□□□□□ -0.89
SENP3Q9H4L4 AL353813.1-201ENST00000440700 253 ntBASIC9.48□□□□□ -0.89
SENP3Q9H4L4 AC009963.3-201ENST00000458090 486 ntBASIC9.48□□□□□ -0.89
SENP3Q9H4L4 RN7SL610P-201ENST00000463845 291 ntBASIC9.48□□□□□ -0.89
SENP3Q9H4L4 AC006487.2-201ENST00000503624 577 ntTSL 4 BASIC9.48□□□□□ -0.89
SENP3Q9H4L4 MRPS21P8-201ENST00000569196 235 ntBASIC9.48□□□□□ -0.89
SENP3Q9H4L4 RN7SL475P-201ENST00000583379 298 ntBASIC9.48□□□□□ -0.89
SENP3Q9H4L4 KANTR-203ENST00000604062 4251 ntAPPRIS P1 TSL 5 BASIC9.48□□□□□ -0.89
SENP3Q9H4L4 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC9.48□□□□□ -0.89
SENP3Q9H4L4 AL590705.5-202ENST00000375204 3161 ntTSL 2 BASIC9.48□□□□□ -0.89
SENP3Q9H4L4 NUMB-204ENST00000535282 3198 ntAPPRIS ALT1 TSL 5 BASIC9.48□□□□□ -0.89
SENP3Q9H4L4 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
SENP3Q9H4L4 EOGT-201ENST00000295571 4138 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
SENP3Q9H4L4 LDHAL6CP-202ENST00000550738 3224 ntBASIC9.48□□□□□ -0.89
SENP3Q9H4L4 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
SENP3Q9H4L4 AC127070.3-201ENST00000503695 3263 ntBASIC9.48□□□□□ -0.89
SENP3Q9H4L4 OR8B8-202ENST00000642064 3914 ntAPPRIS P1 BASIC9.48□□□□□ -0.89
SENP3Q9H4L4 VCAN-202ENST00000342785 7154 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
SENP3Q9H4L4 TPTE2P2-202ENST00000605924 2113 ntTSL 5 BASIC9.47□□□□□ -0.89
SENP3Q9H4L4 UNC5D-201ENST00000287272 8662 ntTSL 5 BASIC9.47□□□□□ -0.89
SENP3Q9H4L4 SLC35E3-202ENST00000398004 17791 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
SENP3Q9H4L4 CAGE1-203ENST00000379918 2877 ntAPPRIS ALT2 TSL 5 BASIC9.47□□□□□ -0.89
SENP3Q9H4L4 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
SENP3Q9H4L4 FLJ42393-201ENST00000623801 2270 ntBASIC9.47□□□□□ -0.89
SENP3Q9H4L4 SLF2-202ENST00000370269 3712 ntAPPRIS ALT2 TSL 1 (best) BASIC9.47□□□□□ -0.89
SENP3Q9H4L4 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC9.47□□□□□ -0.89
SENP3Q9H4L4 BPHL-201ENST00000380368 797 ntTSL 5 BASIC9.47□□□□□ -0.89
SENP3Q9H4L4 AL121885.3-201ENST00000422833 115 ntTSL 3 BASIC9.47□□□□□ -0.89
SENP3Q9H4L4 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC9.47□□□□□ -0.89
SENP3Q9H4L4 KRTAP3-4P-201ENST00000430780 280 ntBASIC9.47□□□□□ -0.89
SENP3Q9H4L4 VPS25P1-201ENST00000455691 508 ntBASIC9.47□□□□□ -0.89
SENP3Q9H4L4 RN7SL860P-201ENST00000473738 223 ntBASIC9.47□□□□□ -0.89
SENP3Q9H4L4 RNA5SP20-201ENST00000515976 84 ntBASIC9.47□□□□□ -0.89
SENP3Q9H4L4 RNA5SP318-201ENST00000516352 92 ntBASIC9.47□□□□□ -0.89
SENP3Q9H4L4 AC022790.1-201ENST00000522872 204 ntBASIC9.47□□□□□ -0.89
SENP3Q9H4L4 AL133399.1-201ENST00000527476 298 ntBASIC9.47□□□□□ -0.89
SENP3Q9H4L4 ANAPC15-205ENST00000535503 734 ntAPPRIS P3 TSL 3 BASIC9.47□□□□□ -0.89
SENP3Q9H4L4 AP003037.1-201ENST00000537594 267 ntTSL 5 BASIC9.47□□□□□ -0.89
SENP3Q9H4L4 AC010761.5-201ENST00000579468 287 ntTSL 3 BASIC9.47□□□□□ -0.89
SENP3Q9H4L4 SNORD95-201ENST00000579879 68 ntBASIC9.47□□□□□ -0.89
SENP3Q9H4L4 AL110115.1-201ENST00000614396 364 ntBASIC9.47□□□□□ -0.89
SENP3Q9H4L4 NRXN3-203ENST00000428277 4219 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
SENP3Q9H4L4 TTLL5-217ENST00000556893 3071 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
SENP3Q9H4L4 LINC01152-201ENST00000472655 3578 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
SENP3Q9H4L4 TMPRSS11BNL-202ENST00000510782 3202 ntTSL 2 BASIC9.46□□□□□ -0.89
SENP3Q9H4L4 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC9.46□□□□□ -0.89
SENP3Q9H4L4 CORIN-211ENST00000610355 4696 ntTSL 5 BASIC9.46□□□□□ -0.89
SENP3Q9H4L4 AMOT-202ENST00000371958 2462 ntAPPRIS ALT2 TSL 5 BASIC9.46□□□□□ -0.89
SENP3Q9H4L4 KCNMA1-203ENST00000354353 5732 ntAPPRIS ALT2 TSL 5 BASIC9.46□□□□□ -0.89
SENP3Q9H4L4 LAMA2-205ENST00000617695 9678 ntAPPRIS ALT2 TSL 5 BASIC9.46□□□□□ -0.89
SENP3Q9H4L4 LAMA2-206ENST00000618192 9687 ntAPPRIS ALT2 TSL 5 BASIC9.46□□□□□ -0.89
SENP3Q9H4L4 ZFHX3-207ENST00000641206 16414 ntAPPRIS P1 BASIC9.46□□□□□ -0.89
SENP3Q9H4L4 MID1-202ENST00000380779 6044 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.89
SENP3Q9H4L4 EZH1-202ENST00000428826 4623 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.89
SENP3Q9H4L4 AQR-201ENST00000156471 9694 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.89
SENP3Q9H4L4 ADA2-206ENST00000449907 4278 ntAPPRIS ALT2 TSL 2 BASIC9.46□□□□□ -0.89
SENP3Q9H4L4 TNP1-201ENST00000236979 407 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
SENP3Q9H4L4 SNORD115-19-201ENST00000363098 82 ntBASIC9.46□□□□□ -0.9
SENP3Q9H4L4 SNORD115-18-201ENST00000363293 82 ntBASIC9.46□□□□□ -0.9
SENP3Q9H4L4 SNORD115-17-201ENST00000364612 82 ntBASIC9.46□□□□□ -0.9
SENP3Q9H4L4 SNORA2.2-201ENST00000365473 135 ntBASIC9.46□□□□□ -0.9
SENP3Q9H4L4 RPL35AP31-201ENST00000418340 337 ntBASIC9.46□□□□□ -0.9
SENP3Q9H4L4 PNKDP1-201ENST00000435914 430 ntBASIC9.46□□□□□ -0.9
SENP3Q9H4L4 KRTAP8-2P-201ENST00000440620 186 ntBASIC9.46□□□□□ -0.9
SENP3Q9H4L4 RNU1-131P-201ENST00000458943 161 ntBASIC9.46□□□□□ -0.9
SENP3Q9H4L4 MRPS17P9-201ENST00000511924 393 ntBASIC9.46□□□□□ -0.9
SENP3Q9H4L4 RNU2-35P-201ENST00000516446 142 ntBASIC9.46□□□□□ -0.9
SENP3Q9H4L4 AP005639.1-201ENST00000526939 192 ntBASIC9.46□□□□□ -0.9
SENP3Q9H4L4 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC9.46□□□□□ -0.9
SENP3Q9H4L4 GPBP1-208ENST00000514387 3310 ntAPPRIS ALT2 TSL 1 (best) BASIC9.46□□□□□ -0.9
SENP3Q9H4L4 EYA3-204ENST00000436342 5943 ntTSL 2 BASIC9.46□□□□□ -0.9
SENP3Q9H4L4 USP37-201ENST00000258399 8032 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
SENP3Q9H4L4 ACKR2-202ENST00000442925 2879 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
SENP3Q9H4L4 ZNF532-223ENST00000591230 4450 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
SENP3Q9H4L4 ANK2-203ENST00000394537 6313 ntAPPRIS ALT2 TSL 1 (best) BASIC9.46□□□□□ -0.9
SENP3Q9H4L4 AL672167.1-205ENST00000641112 3080 ntBASIC9.46□□□□□ -0.9
SENP3Q9H4L4 MC2R-201ENST00000327606 3656 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
SENP3Q9H4L4 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC9.46□□□□□ -0.9
Retrieved 100 of 98,524 protein–RNA pairs in 110.2 ms