Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 MIR4293-201ENST00000584305 78 ntBASIC2.78□□□□□ -1.96
LIME1Q9H400 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC2.78□□□□□ -1.96
LIME1Q9H400 AC068276.1-201ENST00000605793 379 ntBASIC2.78□□□□□ -1.96
LIME1Q9H400 BX664608.1-201ENST00000610519 487 ntBASIC2.78□□□□□ -1.96
LIME1Q9H400 AL390240.1-201ENST00000612950 384 ntBASIC2.78□□□□□ -1.96
LIME1Q9H400 RDM1-219ENST00000615378 542 ntTSL 3 BASIC2.78□□□□□ -1.96
LIME1Q9H400 AC090132.2-201ENST00000615881 347 ntBASIC2.78□□□□□ -1.96
LIME1Q9H400 uc_338.12-201ENST00000616344 181 ntBASIC2.78□□□□□ -1.96
LIME1Q9H400 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC2.78□□□□□ -1.96
LIME1Q9H400 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
LIME1Q9H400 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC2.78□□□□□ -1.96
LIME1Q9H400 MAPK10-266ENST00000641066 6555 ntBASIC2.78□□□□□ -1.96
LIME1Q9H400 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC2.78□□□□□ -1.97
LIME1Q9H400 BCLAF1P1-201ENST00000505813 2752 ntBASIC2.78□□□□□ -1.97
LIME1Q9H400 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC2.77□□□□□ -1.97
LIME1Q9H400 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
LIME1Q9H400 RNU4-1-201ENST00000363925 141 ntBASIC2.77□□□□□ -1.97
LIME1Q9H400 RNU4-40P-201ENST00000364351 143 ntBASIC2.77□□□□□ -1.97
LIME1Q9H400 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC2.77□□□□□ -1.97
LIME1Q9H400 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC2.77□□□□□ -1.97
LIME1Q9H400 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC2.77□□□□□ -1.97
LIME1Q9H400 MIR1290-201ENST00000408735 78 ntBASIC2.77□□□□□ -1.97
LIME1Q9H400 HMGN1P14-201ENST00000412459 517 ntBASIC2.77□□□□□ -1.97
LIME1Q9H400 HMGB3P23-201ENST00000414981 585 ntBASIC2.77□□□□□ -1.97
LIME1Q9H400 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC2.77□□□□□ -1.97
LIME1Q9H400 TIMM9P1-201ENST00000436122 256 ntBASIC2.77□□□□□ -1.97
LIME1Q9H400 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC2.77□□□□□ -1.97
LIME1Q9H400 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC2.77□□□□□ -1.97
LIME1Q9H400 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC2.77□□□□□ -1.97
LIME1Q9H400 MTND1P12-201ENST00000455231 147 ntBASIC2.77□□□□□ -1.97
LIME1Q9H400 AC108059.3-201ENST00000456388 214 ntBASIC2.77□□□□□ -1.97
LIME1Q9H400 AL122001.1-201ENST00000457027 370 ntBASIC2.77□□□□□ -1.97
LIME1Q9H400 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC2.77□□□□□ -1.97
LIME1Q9H400 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC2.77□□□□□ -1.97
LIME1Q9H400 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC2.77□□□□□ -1.97
LIME1Q9H400 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC2.77□□□□□ -1.97
LIME1Q9H400 Y_RNA.695-201ENST00000516715 107 ntBASIC2.77□□□□□ -1.97
LIME1Q9H400 MAL2-206ENST00000522187 547 ntTSL 4 BASIC2.77□□□□□ -1.97
LIME1Q9H400 AC107934.1-201ENST00000522215 217 ntBASIC2.77□□□□□ -1.97
LIME1Q9H400 DEFB108A-201ENST00000530110 222 ntBASIC2.77□□□□□ -1.97
LIME1Q9H400 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC2.77□□□□□ -1.97
LIME1Q9H400 LYZ-203ENST00000549690 669 ntTSL 2 BASIC2.77□□□□□ -1.97
LIME1Q9H400 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC2.77□□□□□ -1.97
LIME1Q9H400 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC2.77□□□□□ -1.97
LIME1Q9H400 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC2.77□□□□□ -1.97
LIME1Q9H400 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC2.77□□□□□ -1.97
LIME1Q9H400 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC2.77□□□□□ -1.97
LIME1Q9H400 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC2.77□□□□□ -1.97
LIME1Q9H400 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC2.77□□□□□ -1.97
LIME1Q9H400 AL157394.1-201ENST00000562983 1224 ntBASIC2.77□□□□□ -1.97
LIME1Q9H400 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC2.77□□□□□ -1.97
LIME1Q9H400 MIR3146-201ENST00000580367 79 ntBASIC2.77□□□□□ -1.97
LIME1Q9H400 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC2.77□□□□□ -1.97
LIME1Q9H400 AC106900.2-201ENST00000604994 317 ntBASIC2.77□□□□□ -1.97
LIME1Q9H400 AC080013.6-201ENST00000606185 215 ntBASIC2.77□□□□□ -1.97
LIME1Q9H400 AL451064.1-201ENST00000607718 471 ntBASIC2.77□□□□□ -1.97
LIME1Q9H400 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC2.77□□□□□ -1.97
LIME1Q9H400 AP002826.1-201ENST00000608835 315 ntBASIC2.77□□□□□ -1.97
LIME1Q9H400 AC013412.1-201ENST00000610687 192 ntBASIC2.77□□□□□ -1.97
LIME1Q9H400 AC245517.5-201ENST00000611529 162 ntBASIC2.77□□□□□ -1.97
LIME1Q9H400 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC2.77□□□□□ -1.97
LIME1Q9H400 AC013476.2-201ENST00000614456 459 ntBASIC2.77□□□□□ -1.97
LIME1Q9H400 MIR6715A-201ENST00000615929 79 ntBASIC2.77□□□□□ -1.97
LIME1Q9H400 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC2.77□□□□□ -1.97
LIME1Q9H400 AL356321.1-201ENST00000621360 228 ntBASIC2.77□□□□□ -1.97
LIME1Q9H400 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC2.77□□□□□ -1.97
LIME1Q9H400 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
LIME1Q9H400 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC2.77□□□□□ -1.97
LIME1Q9H400 AC021755.1-201ENST00000559747 1447 ntBASIC2.76□□□□□ -1.97
LIME1Q9H400 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
LIME1Q9H400 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC2.76□□□□□ -1.97
LIME1Q9H400 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
LIME1Q9H400 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
LIME1Q9H400 RNA5SP432-201ENST00000362480 116 ntBASIC2.76□□□□□ -1.97
LIME1Q9H400 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC2.76□□□□□ -1.97
LIME1Q9H400 RNY3P10-201ENST00000384764 102 ntBASIC2.76□□□□□ -1.97
LIME1Q9H400 MIR514A1-201ENST00000385133 98 ntBASIC2.76□□□□□ -1.97
LIME1Q9H400 EI24P2-201ENST00000397776 1076 ntBASIC2.76□□□□□ -1.97
LIME1Q9H400 Y_RNA.598-201ENST00000410480 95 ntBASIC2.76□□□□□ -1.97
LIME1Q9H400 RN7SKP142-201ENST00000411236 328 ntBASIC2.76□□□□□ -1.97
LIME1Q9H400 AL353705.1-201ENST00000433468 480 ntBASIC2.76□□□□□ -1.97
LIME1Q9H400 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC2.76□□□□□ -1.97
LIME1Q9H400 NDUFB4P6-201ENST00000436819 366 ntBASIC2.76□□□□□ -1.97
LIME1Q9H400 RPL22P17-201ENST00000438729 315 ntBASIC2.76□□□□□ -1.97
LIME1Q9H400 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC2.76□□□□□ -1.97
LIME1Q9H400 GAPDHP27-201ENST00000447427 1020 ntBASIC2.76□□□□□ -1.97
LIME1Q9H400 ST13P20-201ENST00000447996 1065 ntBASIC2.76□□□□□ -1.97
LIME1Q9H400 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC2.76□□□□□ -1.97
LIME1Q9H400 AL359385.1-201ENST00000456509 365 ntBASIC2.76□□□□□ -1.97
LIME1Q9H400 SNORD42A-201ENST00000459584 64 ntBASIC2.76□□□□□ -1.97
LIME1Q9H400 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC2.76□□□□□ -1.97
LIME1Q9H400 RPS15AP36-201ENST00000492022 382 ntBASIC2.76□□□□□ -1.97
LIME1Q9H400 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
LIME1Q9H400 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC2.76□□□□□ -1.97
LIME1Q9H400 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
LIME1Q9H400 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC2.76□□□□□ -1.97
LIME1Q9H400 CDC42P4-201ENST00000510507 563 ntBASIC2.76□□□□□ -1.97
LIME1Q9H400 AL359273.1-201ENST00000510918 627 ntBASIC2.76□□□□□ -1.97
LIME1Q9H400 SCARNA15.2-201ENST00000516409 127 ntBASIC2.76□□□□□ -1.97
LIME1Q9H400 PSMA2P1-201ENST00000526365 646 ntBASIC2.76□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 109 ms