Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC087588.2-201ENST00000617667 426 ntBASIC0.9□□□□□ -2.27
VPS13AQ96RL7 Y_RNA.48-201ENST00000362710 103 ntBASIC0.9□□□□□ -2.27
VPS13AQ96RL7 PGBD4P3-201ENST00000440731 581 ntBASIC0.9□□□□□ -2.27
VPS13AQ96RL7 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC0.9□□□□□ -2.27
VPS13AQ96RL7 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC0.9□□□□□ -2.27
VPS13AQ96RL7 AC126177.8-201ENST00000618339 1015 ntBASIC0.9□□□□□ -2.27
VPS13AQ96RL7 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC0.9□□□□□ -2.27
VPS13AQ96RL7 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC0.9□□□□□ -2.27
VPS13AQ96RL7 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC0.89□□□□□ -2.27
VPS13AQ96RL7 RNY4P3-201ENST00000365254 95 ntBASIC0.89□□□□□ -2.27
VPS13AQ96RL7 RNU6-16P-201ENST00000384385 107 ntBASIC0.89□□□□□ -2.27
VPS13AQ96RL7 NUP35P2-201ENST00000416748 943 ntBASIC0.89□□□□□ -2.27
VPS13AQ96RL7 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC0.89□□□□□ -2.27
VPS13AQ96RL7 ANAPC10P1-201ENST00000395991 556 ntBASIC0.89□□□□□ -2.27
VPS13AQ96RL7 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC0.89□□□□□ -2.27
VPS13AQ96RL7 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC0.89□□□□□ -2.27
VPS13AQ96RL7 AL627224.1-201ENST00000448334 444 ntBASIC0.89□□□□□ -2.27
VPS13AQ96RL7 AC234775.1-201ENST00000454247 670 ntBASIC0.89□□□□□ -2.27
VPS13AQ96RL7 AC024579.1-201ENST00000503685 371 ntTSL 5 BASIC0.89□□□□□ -2.27
VPS13AQ96RL7 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC0.89□□□□□ -2.27
VPS13AQ96RL7 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC0.89□□□□□ -2.27
VPS13AQ96RL7 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC0.89□□□□□ -2.27
VPS13AQ96RL7 MIR5589-201ENST00000579442 60 ntBASIC0.89□□□□□ -2.27
VPS13AQ96RL7 AP003117.1-201ENST00000602771 554 ntBASIC0.89□□□□□ -2.27
VPS13AQ96RL7 MIR6835-201ENST00000621552 64 ntBASIC0.89□□□□□ -2.27
VPS13AQ96RL7 FOXP2-217ENST00000462331 1388 ntTSL 1 (best) BASIC0.89□□□□□ -2.27
VPS13AQ96RL7 HMGB3P31-201ENST00000413333 595 ntBASIC0.88□□□□□ -2.27
VPS13AQ96RL7 Z75741.2-201ENST00000417272 1167 ntBASIC0.88□□□□□ -2.27
VPS13AQ96RL7 PLGLA-202ENST00000482249 475 ntTSL 3 BASIC0.88□□□□□ -2.27
VPS13AQ96RL7 MIR3122-201ENST00000577243 73 ntBASIC0.88□□□□□ -2.27
VPS13AQ96RL7 AC005034.5-201ENST00000604219 466 ntBASIC0.88□□□□□ -2.27
VPS13AQ96RL7 MIR409-201ENST00000362237 79 ntBASIC0.88□□□□□ -2.27
VPS13AQ96RL7 RNU4-31P-201ENST00000384211 141 ntBASIC0.88□□□□□ -2.27
VPS13AQ96RL7 SSXP10-201ENST00000402595 565 ntBASIC0.88□□□□□ -2.27
VPS13AQ96RL7 UBE2V2P1-201ENST00000434717 398 ntBASIC0.88□□□□□ -2.27
VPS13AQ96RL7 AP001960.1-201ENST00000506494 658 ntBASIC0.88□□□□□ -2.27
VPS13AQ96RL7 OR4R1P-201ENST00000529879 463 ntBASIC0.88□□□□□ -2.27
VPS13AQ96RL7 AL133393.1-201ENST00000603277 287 ntBASIC0.88□□□□□ -2.27
VPS13AQ96RL7 DPRXP5-201ENST00000604662 539 ntBASIC0.88□□□□□ -2.27
VPS13AQ96RL7 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC0.88□□□□□ -2.27
VPS13AQ96RL7 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC0.88□□□□□ -2.27
VPS13AQ96RL7 DNAH14-203ENST00000366848 929 ntTSL 1 (best) BASIC0.88□□□□□ -2.27
VPS13AQ96RL7 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC0.88□□□□□ -2.27
VPS13AQ96RL7 MTCO3P46-201ENST00000425787 232 ntBASIC0.88□□□□□ -2.27
VPS13AQ96RL7 RNA5SP310-201ENST00000459084 116 ntBASIC0.88□□□□□ -2.27
VPS13AQ96RL7 AC096751.1-202ENST00000502691 1067 ntBASIC0.88□□□□□ -2.27
VPS13AQ96RL7 RNA5SP498-201ENST00000411342 120 ntBASIC0.87□□□□□ -2.27
VPS13AQ96RL7 PSPHP1-201ENST00000450062 261 ntBASIC0.87□□□□□ -2.27
VPS13AQ96RL7 RPL9P9-202ENST00000466501 579 ntBASIC0.87□□□□□ -2.27
VPS13AQ96RL7 AP000254.1-201ENST00000609934 520 ntBASIC0.87□□□□□ -2.27
VPS13AQ96RL7 AC146507.1-201ENST00000468335 354 ntBASIC0.87□□□□□ -2.27
VPS13AQ96RL7 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC0.87□□□□□ -2.27
VPS13AQ96RL7 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC0.87□□□□□ -2.27
VPS13AQ96RL7 Z69720.2-201ENST00000624755 279 ntBASIC0.87□□□□□ -2.27
VPS13AQ96RL7 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC0.87□□□□□ -2.27
VPS13AQ96RL7 RNU6-288P-201ENST00000363690 104 ntBASIC0.86□□□□□ -2.27
VPS13AQ96RL7 MTND2P16-201ENST00000419987 799 ntBASIC0.86□□□□□ -2.27
VPS13AQ96RL7 AC104685.1-201ENST00000502445 371 ntBASIC0.86□□□□□ -2.27
VPS13AQ96RL7 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC0.86□□□□□ -2.27
VPS13AQ96RL7 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC0.86□□□□□ -2.27
VPS13AQ96RL7 RNU6-666P-201ENST00000363499 107 ntBASIC0.86□□□□□ -2.27
VPS13AQ96RL7 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC0.86□□□□□ -2.27
VPS13AQ96RL7 LINC01347-201ENST00000417964 355 ntBASIC0.86□□□□□ -2.27
VPS13AQ96RL7 ARF4P4-201ENST00000439608 520 ntBASIC0.86□□□□□ -2.27
VPS13AQ96RL7 GTF2IP12-201ENST00000456547 356 ntBASIC0.86□□□□□ -2.27
VPS13AQ96RL7 MRPS33P3-201ENST00000513456 322 ntBASIC0.86□□□□□ -2.27
VPS13AQ96RL7 AC239860.2-201ENST00000525886 270 ntBASIC0.86□□□□□ -2.27
VPS13AQ96RL7 MIR4698-201ENST00000577795 80 ntBASIC0.86□□□□□ -2.27
VPS13AQ96RL7 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC0.86□□□□□ -2.27
VPS13AQ96RL7 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC0.86□□□□□ -2.27
VPS13AQ96RL7 AC068620.4-201ENST00000636730 1182 ntBASIC0.86□□□□□ -2.27
VPS13AQ96RL7 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC0.86□□□□□ -2.27
VPS13AQ96RL7 AC015922.2-201ENST00000435593 184 ntBASIC0.86□□□□□ -2.27
VPS13AQ96RL7 AL136380.1-201ENST00000447970 162 ntBASIC0.86□□□□□ -2.27
VPS13AQ96RL7 RPL26P9-201ENST00000457466 433 ntBASIC0.86□□□□□ -2.27
VPS13AQ96RL7 SUMO2P4-201ENST00000504193 276 ntBASIC0.86□□□□□ -2.27
VPS13AQ96RL7 AC083923.1-201ENST00000523708 376 ntBASIC0.86□□□□□ -2.27
VPS13AQ96RL7 NOP56P3-201ENST00000549457 385 ntBASIC0.86□□□□□ -2.27
VPS13AQ96RL7 uc_338.22-201ENST00000622722 187 ntBASIC0.86□□□□□ -2.27
VPS13AQ96RL7 MIR6759-201ENST00000638110 65 ntBASIC0.86□□□□□ -2.27
VPS13AQ96RL7 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC0.85□□□□□ -2.27
VPS13AQ96RL7 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC0.85□□□□□ -2.27
VPS13AQ96RL7 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC0.85□□□□□ -2.27
VPS13AQ96RL7 MIR1912-201ENST00000410389 80 ntBASIC0.85□□□□□ -2.27
VPS13AQ96RL7 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC0.85□□□□□ -2.27
VPS13AQ96RL7 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC0.85□□□□□ -2.27
VPS13AQ96RL7 ZNF90P2-204ENST00000419323 1075 ntBASIC0.85□□□□□ -2.27
VPS13AQ96RL7 AC005772.1-201ENST00000446671 976 ntTSL 1 (best) BASIC0.85□□□□□ -2.27
VPS13AQ96RL7 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC0.85□□□□□ -2.27
VPS13AQ96RL7 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC0.85□□□□□ -2.27
VPS13AQ96RL7 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC0.85□□□□□ -2.27
VPS13AQ96RL7 RPS20P15-201ENST00000412792 311 ntBASIC0.85□□□□□ -2.27
VPS13AQ96RL7 OR6C66P-201ENST00000414917 930 ntBASIC0.85□□□□□ -2.27
VPS13AQ96RL7 HMGB3P21-201ENST00000452483 547 ntBASIC0.85□□□□□ -2.27
VPS13AQ96RL7 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC0.85□□□□□ -2.27
VPS13AQ96RL7 AC112198.4-201ENST00000515450 351 ntBASIC0.85□□□□□ -2.27
VPS13AQ96RL7 RN7SKP179-201ENST00000516126 217 ntBASIC0.85□□□□□ -2.27
VPS13AQ96RL7 RNU2-44P-201ENST00000516795 194 ntBASIC0.85□□□□□ -2.27
VPS13AQ96RL7 AC104350.1-201ENST00000518750 877 ntTSL 3 BASIC0.85□□□□□ -2.27
VPS13AQ96RL7 AC020658.4-201ENST00000613987 684 ntBASIC0.85□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 121.7 ms