Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC2.82□□□□□ -1.96
VPS39Q96JC1 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
VPS39Q96JC1 RN7SKP140-201ENST00000411196 284 ntBASIC2.82□□□□□ -1.96
VPS39Q96JC1 RNU6-516P-201ENST00000411381 104 ntBASIC2.82□□□□□ -1.96
VPS39Q96JC1 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC2.82□□□□□ -1.96
VPS39Q96JC1 HMGB1P49-201ENST00000418882 569 ntBASIC2.82□□□□□ -1.96
VPS39Q96JC1 B3GALNT1P1-201ENST00000420569 975 ntBASIC2.82□□□□□ -1.96
VPS39Q96JC1 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC2.82□□□□□ -1.96
VPS39Q96JC1 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC2.82□□□□□ -1.96
VPS39Q96JC1 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC2.82□□□□□ -1.96
VPS39Q96JC1 RPS3AP12-201ENST00000443616 753 ntBASIC2.82□□□□□ -1.96
VPS39Q96JC1 RPL39P40-201ENST00000445481 146 ntBASIC2.82□□□□□ -1.96
VPS39Q96JC1 NIPA2P5-201ENST00000452282 464 ntBASIC2.82□□□□□ -1.96
VPS39Q96JC1 OR6C5P-201ENST00000452388 923 ntBASIC2.82□□□□□ -1.96
VPS39Q96JC1 AC117522.3-201ENST00000507974 584 ntBASIC2.82□□□□□ -1.96
VPS39Q96JC1 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
VPS39Q96JC1 RNA5SP471-201ENST00000516971 106 ntBASIC2.82□□□□□ -1.96
VPS39Q96JC1 SNORA70.24-201ENST00000517233 118 ntBASIC2.82□□□□□ -1.96
VPS39Q96JC1 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC2.82□□□□□ -1.96
VPS39Q96JC1 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC2.82□□□□□ -1.96
VPS39Q96JC1 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC2.82□□□□□ -1.96
VPS39Q96JC1 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC2.82□□□□□ -1.96
VPS39Q96JC1 VN1R82P-201ENST00000601481 356 ntBASIC2.82□□□□□ -1.96
VPS39Q96JC1 AL592221.1-201ENST00000605266 382 ntBASIC2.82□□□□□ -1.96
VPS39Q96JC1 AC026790.2-201ENST00000606282 430 ntBASIC2.82□□□□□ -1.96
VPS39Q96JC1 FTX_3.1-201ENST00000610451 147 ntBASIC2.82□□□□□ -1.96
VPS39Q96JC1 AP002782.1-201ENST00000623107 614 ntBASIC2.82□□□□□ -1.96
VPS39Q96JC1 AL356596.1-201ENST00000624230 379 ntBASIC2.82□□□□□ -1.96
VPS39Q96JC1 AC019226.1-201ENST00000625666 515 ntBASIC2.82□□□□□ -1.96
VPS39Q96JC1 MIR7515-201ENST00000637837 67 ntBASIC2.82□□□□□ -1.96
VPS39Q96JC1 Z82195.2-201ENST00000612348 18351 ntBASIC2.82□□□□□ -1.96
VPS39Q96JC1 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC2.81□□□□□ -1.96
VPS39Q96JC1 FTLP6-201ENST00000355274 422 ntBASIC2.81□□□□□ -1.96
VPS39Q96JC1 RN7SKP226-201ENST00000364912 300 ntBASIC2.81□□□□□ -1.96
VPS39Q96JC1 SNORA70.4-201ENST00000365509 134 ntBASIC2.81□□□□□ -1.96
VPS39Q96JC1 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
VPS39Q96JC1 TAS2R15P-201ENST00000390674 928 ntBASIC2.81□□□□□ -1.96
VPS39Q96JC1 AL356421.1-201ENST00000403255 413 ntBASIC2.81□□□□□ -1.96
VPS39Q96JC1 AC011233.1-201ENST00000422812 283 ntBASIC2.81□□□□□ -1.96
VPS39Q96JC1 XKRYP1-201ENST00000423438 492 ntBASIC2.81□□□□□ -1.96
VPS39Q96JC1 XKRYP2-201ENST00000432915 492 ntBASIC2.81□□□□□ -1.96
VPS39Q96JC1 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC2.81□□□□□ -1.96
VPS39Q96JC1 AC112653.1-201ENST00000443851 386 ntBASIC2.81□□□□□ -1.96
VPS39Q96JC1 AL671855.1-201ENST00000446875 1203 ntBASIC2.81□□□□□ -1.96
VPS39Q96JC1 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC2.81□□□□□ -1.96
VPS39Q96JC1 snoU13.22-201ENST00000459428 104 ntBASIC2.81□□□□□ -1.96
VPS39Q96JC1 AC008716.1-201ENST00000511084 513 ntBASIC2.81□□□□□ -1.96
VPS39Q96JC1 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC2.81□□□□□ -1.96
VPS39Q96JC1 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC2.81□□□□□ -1.96
VPS39Q96JC1 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC2.81□□□□□ -1.96
VPS39Q96JC1 AL354943.1-201ENST00000572103 781 ntBASIC2.81□□□□□ -1.96
VPS39Q96JC1 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC2.81□□□□□ -1.96
VPS39Q96JC1 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC2.81□□□□□ -1.96
VPS39Q96JC1 MTCO3P13-201ENST00000577757 781 ntBASIC2.81□□□□□ -1.96
VPS39Q96JC1 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC2.81□□□□□ -1.96
VPS39Q96JC1 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC2.81□□□□□ -1.96
VPS39Q96JC1 AC002545.1-201ENST00000592511 181 ntBASIC2.81□□□□□ -1.96
VPS39Q96JC1 AL596327.1-201ENST00000603629 213 ntBASIC2.81□□□□□ -1.96
VPS39Q96JC1 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC2.81□□□□□ -1.96
VPS39Q96JC1 TUSC7.1-201ENST00000610969 165 ntBASIC2.81□□□□□ -1.96
VPS39Q96JC1 AC009159.2-201ENST00000617603 606 ntBASIC2.81□□□□□ -1.96
VPS39Q96JC1 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC2.81□□□□□ -1.96
VPS39Q96JC1 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
VPS39Q96JC1 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
VPS39Q96JC1 RNU1-39P-201ENST00000383897 165 ntBASIC2.8□□□□□ -1.96
VPS39Q96JC1 RNU6-1200P-201ENST00000384162 107 ntBASIC2.8□□□□□ -1.96
VPS39Q96JC1 RNU6-114P-201ENST00000384704 105 ntBASIC2.8□□□□□ -1.96
VPS39Q96JC1 AL513331.1-201ENST00000411908 397 ntBASIC2.8□□□□□ -1.96
VPS39Q96JC1 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
VPS39Q96JC1 UBE2Q2P12-201ENST00000414573 204 ntBASIC2.8□□□□□ -1.96
VPS39Q96JC1 HIGD1AP15-201ENST00000416198 280 ntBASIC2.8□□□□□ -1.96
VPS39Q96JC1 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC2.8□□□□□ -1.96
VPS39Q96JC1 AL445669.1-201ENST00000426743 755 ntBASIC2.8□□□□□ -1.96
VPS39Q96JC1 TRIM60P8Y-201ENST00000436338 762 ntBASIC2.8□□□□□ -1.96
VPS39Q96JC1 UBE2V1P13-201ENST00000436983 439 ntBASIC2.8□□□□□ -1.96
VPS39Q96JC1 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.8□□□□□ -1.96
VPS39Q96JC1 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC2.8□□□□□ -1.96
VPS39Q96JC1 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC2.8□□□□□ -1.96
VPS39Q96JC1 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC2.8□□□□□ -1.96
VPS39Q96JC1 MTCO1P27-201ENST00000448269 226 ntBASIC2.8□□□□□ -1.96
VPS39Q96JC1 RSL24D1P3-201ENST00000449255 495 ntBASIC2.8□□□□□ -1.96
VPS39Q96JC1 RPL36AP51-201ENST00000487216 318 ntBASIC2.8□□□□□ -1.96
VPS39Q96JC1 LTV1P1-201ENST00000510683 1237 ntBASIC2.8□□□□□ -1.96
VPS39Q96JC1 AC034159.1-201ENST00000513885 583 ntBASIC2.8□□□□□ -1.96
VPS39Q96JC1 RN7SKP287-201ENST00000516546 266 ntBASIC2.8□□□□□ -1.96
VPS39Q96JC1 SCARNA13-201ENST00000516672 275 ntBASIC2.8□□□□□ -1.96
VPS39Q96JC1 AC105185.1-201ENST00000518705 535 ntBASIC2.8□□□□□ -1.96
VPS39Q96JC1 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC2.8□□□□□ -1.96
VPS39Q96JC1 AC090802.1-201ENST00000520870 445 ntTSL 2 BASIC2.8□□□□□ -1.96
VPS39Q96JC1 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC2.8□□□□□ -1.96
VPS39Q96JC1 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC2.8□□□□□ -1.96
VPS39Q96JC1 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC2.8□□□□□ -1.96
VPS39Q96JC1 ZNF861P-201ENST00000588126 639 ntBASIC2.8□□□□□ -1.96
VPS39Q96JC1 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC2.8□□□□□ -1.96
VPS39Q96JC1 AC136601.2-201ENST00000604356 474 ntBASIC2.8□□□□□ -1.96
VPS39Q96JC1 AC093424.1-201ENST00000604999 338 ntBASIC2.8□□□□□ -1.96
VPS39Q96JC1 AC005046.1-201ENST00000608515 625 ntBASIC2.8□□□□□ -1.96
VPS39Q96JC1 AL355816.2-201ENST00000610049 647 ntBASIC2.8□□□□□ -1.96
VPS39Q96JC1 AC087683.2-201ENST00000611384 326 ntBASIC2.8□□□□□ -1.96
VPS39Q96JC1 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC2.8□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 113.2 ms