Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
CHMP4CQ96CF2 USP33-201ENST00000357428 4155 ntTSL 5 BASIC4.36□□□□□ -1.71
CHMP4CQ96CF2 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC4.36□□□□□ -1.71
CHMP4CQ96CF2 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
CHMP4CQ96CF2 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.36□□□□□ -1.71
CHMP4CQ96CF2 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.36□□□□□ -1.71
CHMP4CQ96CF2 DEFB109C-201ENST00000382575 264 ntBASIC4.36□□□□□ -1.71
CHMP4CQ96CF2 DEFB109B-201ENST00000382656 264 ntBASIC4.36□□□□□ -1.71
CHMP4CQ96CF2 MIR514A1-201ENST00000385133 98 ntBASIC4.36□□□□□ -1.71
CHMP4CQ96CF2 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
CHMP4CQ96CF2 NDUFS5P1-201ENST00000405668 289 ntBASIC4.36□□□□□ -1.71
CHMP4CQ96CF2 RNU2-39P-201ENST00000410604 198 ntBASIC4.36□□□□□ -1.71
CHMP4CQ96CF2 HMGB3P20-201ENST00000417997 600 ntBASIC4.36□□□□□ -1.71
CHMP4CQ96CF2 MTCO2P19-201ENST00000427513 598 ntBASIC4.36□□□□□ -1.71
CHMP4CQ96CF2 AL356867.1-201ENST00000429623 299 ntBASIC4.36□□□□□ -1.71
CHMP4CQ96CF2 RPS20P5-201ENST00000434808 360 ntBASIC4.36□□□□□ -1.71
CHMP4CQ96CF2 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
CHMP4CQ96CF2 MTATP6P13-201ENST00000438531 667 ntBASIC4.36□□□□□ -1.71
CHMP4CQ96CF2 TXNP1-201ENST00000441872 371 ntBASIC4.36□□□□□ -1.71
CHMP4CQ96CF2 GAPDHP27-201ENST00000447427 1020 ntBASIC4.36□□□□□ -1.71
CHMP4CQ96CF2 HMGB3P8-201ENST00000449709 577 ntBASIC4.36□□□□□ -1.71
CHMP4CQ96CF2 AC093899.1-201ENST00000457984 376 ntBASIC4.36□□□□□ -1.71
CHMP4CQ96CF2 RPS4XP13-201ENST00000483219 789 ntBASIC4.36□□□□□ -1.71
CHMP4CQ96CF2 AC105914.1-201ENST00000511798 226 ntBASIC4.36□□□□□ -1.71
CHMP4CQ96CF2 IGKV2D-19-201ENST00000523346 262 ntBASIC4.36□□□□□ -1.71
CHMP4CQ96CF2 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC4.36□□□□□ -1.71
CHMP4CQ96CF2 MIR5187-201ENST00000583479 76 ntBASIC4.36□□□□□ -1.71
CHMP4CQ96CF2 AL391646.1-201ENST00000603860 190 ntBASIC4.36□□□□□ -1.71
CHMP4CQ96CF2 AL589994.2-201ENST00000621124 579 ntBASIC4.36□□□□□ -1.71
CHMP4CQ96CF2 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC4.36□□□□□ -1.71
CHMP4CQ96CF2 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
CHMP4CQ96CF2 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC4.36□□□□□ -1.71
CHMP4CQ96CF2 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
CHMP4CQ96CF2 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
CHMP4CQ96CF2 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
CHMP4CQ96CF2 AC005183.1-201ENST00000603687 1979 ntBASIC4.35□□□□□ -1.71
CHMP4CQ96CF2 AL391417.1-201ENST00000404100 426 ntBASIC4.35□□□□□ -1.71
CHMP4CQ96CF2 RNU2-37P-201ENST00000410695 177 ntBASIC4.35□□□□□ -1.71
CHMP4CQ96CF2 DBIP2-201ENST00000419076 262 ntBASIC4.35□□□□□ -1.71
CHMP4CQ96CF2 HMGB1P12-201ENST00000438594 598 ntBASIC4.35□□□□□ -1.71
CHMP4CQ96CF2 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC4.35□□□□□ -1.71
CHMP4CQ96CF2 AC026427.2-201ENST00000506228 536 ntBASIC4.35□□□□□ -1.71
CHMP4CQ96CF2 AC117522.1-201ENST00000509821 380 ntBASIC4.35□□□□□ -1.71
CHMP4CQ96CF2 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC4.35□□□□□ -1.71
CHMP4CQ96CF2 RNU6-579P-201ENST00000516879 102 ntBASIC4.35□□□□□ -1.71
CHMP4CQ96CF2 AP001804.3-201ENST00000525146 880 ntBASIC4.35□□□□□ -1.71
CHMP4CQ96CF2 AP003034.1-201ENST00000534621 422 ntBASIC4.35□□□□□ -1.71
CHMP4CQ96CF2 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
CHMP4CQ96CF2 IGKV2OR2-8-201ENST00000558710 300 ntBASIC4.35□□□□□ -1.71
CHMP4CQ96CF2 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC4.35□□□□□ -1.71
CHMP4CQ96CF2 AP001029.3-201ENST00000588063 596 ntBASIC4.35□□□□□ -1.71
CHMP4CQ96CF2 AC106900.2-201ENST00000604994 317 ntBASIC4.35□□□□□ -1.71
CHMP4CQ96CF2 AC008536.2-201ENST00000607284 349 ntBASIC4.35□□□□□ -1.71
CHMP4CQ96CF2 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC4.35□□□□□ -1.71
CHMP4CQ96CF2 AC139792.3-201ENST00000623525 224 ntBASIC4.35□□□□□ -1.71
CHMP4CQ96CF2 SRP54-214ENST00000630962 162 ntTSL 5 BASIC4.35□□□□□ -1.71
CHMP4CQ96CF2 AP000553.6-201ENST00000641242 118 ntBASIC4.35□□□□□ -1.71
CHMP4CQ96CF2 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC4.35□□□□□ -1.71
CHMP4CQ96CF2 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
CHMP4CQ96CF2 ZNF826P-207ENST00000622273 1910 ntBASIC4.34□□□□□ -1.71
CHMP4CQ96CF2 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC4.34□□□□□ -1.71
CHMP4CQ96CF2 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
CHMP4CQ96CF2 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
CHMP4CQ96CF2 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
CHMP4CQ96CF2 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.71
CHMP4CQ96CF2 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
CHMP4CQ96CF2 MIR208A-201ENST00000362287 71 ntBASIC4.34□□□□□ -1.71
CHMP4CQ96CF2 RNU6-1120P-201ENST00000362988 108 ntBASIC4.34□□□□□ -1.71
CHMP4CQ96CF2 RNA5SP387-201ENST00000364226 106 ntBASIC4.34□□□□□ -1.71
CHMP4CQ96CF2 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
CHMP4CQ96CF2 RNU6-701P-201ENST00000384059 107 ntBASIC4.34□□□□□ -1.71
CHMP4CQ96CF2 PVALB-202ENST00000404171 422 ntTSL 2 BASIC4.34□□□□□ -1.71
CHMP4CQ96CF2 HSPE1P26-201ENST00000405341 275 ntBASIC4.34□□□□□ -1.71
CHMP4CQ96CF2 RN7SKP140-201ENST00000411196 284 ntBASIC4.34□□□□□ -1.71
CHMP4CQ96CF2 RPS29P4-201ENST00000414733 161 ntBASIC4.34□□□□□ -1.71
CHMP4CQ96CF2 EIF1P1-201ENST00000421436 341 ntBASIC4.34□□□□□ -1.71
CHMP4CQ96CF2 MTCO3P30-201ENST00000426425 670 ntBASIC4.34□□□□□ -1.71
CHMP4CQ96CF2 HSPD1P21-201ENST00000436541 245 ntBASIC4.34□□□□□ -1.71
CHMP4CQ96CF2 AC020550.1-201ENST00000447385 163 ntBASIC4.34□□□□□ -1.71
CHMP4CQ96CF2 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC4.34□□□□□ -1.71
CHMP4CQ96CF2 RPL7P49-201ENST00000471402 708 ntBASIC4.34□□□□□ -1.71
CHMP4CQ96CF2 RNU6-1231P-201ENST00000517185 103 ntBASIC4.34□□□□□ -1.71
CHMP4CQ96CF2 AL359212.1-201ENST00000556608 614 ntBASIC4.34□□□□□ -1.71
CHMP4CQ96CF2 NCAPGP2-201ENST00000557911 754 ntBASIC4.34□□□□□ -1.71
CHMP4CQ96CF2 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC4.34□□□□□ -1.71
CHMP4CQ96CF2 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC4.34□□□□□ -1.71
CHMP4CQ96CF2 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC4.34□□□□□ -1.71
CHMP4CQ96CF2 AC069200.1-201ENST00000609511 323 ntBASIC4.34□□□□□ -1.71
CHMP4CQ96CF2 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC4.34□□□□□ -1.71
CHMP4CQ96CF2 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
CHMP4CQ96CF2 AL672296.1-201ENST00000427780 2158 ntBASIC4.34□□□□□ -1.72
CHMP4CQ96CF2 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC4.34□□□□□ -1.72
CHMP4CQ96CF2 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC4.34□□□□□ -1.72
CHMP4CQ96CF2 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
CHMP4CQ96CF2 AC007656.2-201ENST00000624902 4547 ntBASIC4.33□□□□□ -1.72
CHMP4CQ96CF2 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC4.33□□□□□ -1.72
CHMP4CQ96CF2 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC4.33□□□□□ -1.72
CHMP4CQ96CF2 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
CHMP4CQ96CF2 OR4G2P-201ENST00000328113 903 ntBASIC4.33□□□□□ -1.72
CHMP4CQ96CF2 RNU6-1085P-201ENST00000363576 107 ntBASIC4.33□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 101.1 ms