Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 RPL23AP76-201ENST00000441860 458 ntBASIC0.71□□□□□ -2.3
LINC00643Q86TS7 AL590365.1-201ENST00000450788 243 ntBASIC0.71□□□□□ -2.3
LINC00643Q86TS7 RNU6-775P-201ENST00000459318 96 ntBASIC0.71□□□□□ -2.3
LINC00643Q86TS7 PDCD10-206ENST00000470131 1026 ntAPPRIS P1 TSL 5 BASIC0.71□□□□□ -2.3
LINC00643Q86TS7 NAA50-206ENST00000493454 964 ntTSL 2 BASIC0.71□□□□□ -2.3
LINC00643Q86TS7 AC011352.3-201ENST00000505162 593 ntBASIC0.71□□□□□ -2.3
LINC00643Q86TS7 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC0.71□□□□□ -2.3
LINC00643Q86TS7 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC0.71□□□□□ -2.3
LINC00643Q86TS7 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC0.71□□□□□ -2.3
LINC00643Q86TS7 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC0.71□□□□□ -2.3
LINC00643Q86TS7 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC0.71□□□□□ -2.3
LINC00643Q86TS7 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC0.71□□□□□ -2.3
LINC00643Q86TS7 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC0.71□□□□□ -2.3
LINC00643Q86TS7 AP001269.3-201ENST00000588718 329 ntBASIC0.71□□□□□ -2.3
LINC00643Q86TS7 AC012669.1-201ENST00000603209 283 ntBASIC0.71□□□□□ -2.3
LINC00643Q86TS7 AC025588.3-201ENST00000604182 274 ntBASIC0.71□□□□□ -2.3
LINC00643Q86TS7 MTND4P8-201ENST00000514997 1362 ntBASIC0.7□□□□□ -2.3
LINC00643Q86TS7 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC0.7□□□□□ -2.3
LINC00643Q86TS7 RN7SKP227-201ENST00000364445 330 ntBASIC0.7□□□□□ -2.3
LINC00643Q86TS7 SNORA70.2-201ENST00000364506 135 ntBASIC0.7□□□□□ -2.3
LINC00643Q86TS7 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC0.7□□□□□ -2.3
LINC00643Q86TS7 PTMAP2-201ENST00000397627 327 ntBASIC0.7□□□□□ -2.3
LINC00643Q86TS7 AL590084.1-201ENST00000407885 387 ntBASIC0.7□□□□□ -2.3
LINC00643Q86TS7 EIF4EP2-201ENST00000422816 654 ntBASIC0.7□□□□□ -2.3
LINC00643Q86TS7 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC0.7□□□□□ -2.3
LINC00643Q86TS7 TRAPPC2P8-201ENST00000440676 396 ntBASIC0.7□□□□□ -2.3
LINC00643Q86TS7 CR769776.1-201ENST00000441254 787 ntBASIC0.7□□□□□ -2.3
LINC00643Q86TS7 TRAPPC2P3-201ENST00000443200 321 ntBASIC0.7□□□□□ -2.3
LINC00643Q86TS7 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC0.7□□□□□ -2.3
LINC00643Q86TS7 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC0.7□□□□□ -2.3
LINC00643Q86TS7 RNA5SP57-201ENST00000459463 123 ntBASIC0.7□□□□□ -2.3
LINC00643Q86TS7 RPL39P28-201ENST00000465655 155 ntBASIC0.7□□□□□ -2.3
LINC00643Q86TS7 AL049714.1-201ENST00000466686 347 ntBASIC0.7□□□□□ -2.3
LINC00643Q86TS7 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC0.7□□□□□ -2.3
LINC00643Q86TS7 RPS20P22-201ENST00000473700 357 ntBASIC0.7□□□□□ -2.3
LINC00643Q86TS7 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC0.7□□□□□ -2.3
LINC00643Q86TS7 AC011825.1-201ENST00000484967 388 ntBASIC0.7□□□□□ -2.3
LINC00643Q86TS7 RPL9P6-201ENST00000492764 598 ntBASIC0.7□□□□□ -2.3
LINC00643Q86TS7 MTCYBP18-201ENST00000501056 747 ntBASIC0.7□□□□□ -2.3
LINC00643Q86TS7 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC0.7□□□□□ -2.3
LINC00643Q86TS7 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC0.7□□□□□ -2.3
LINC00643Q86TS7 AC074250.1-201ENST00000511117 192 ntBASIC0.7□□□□□ -2.3
LINC00643Q86TS7 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC0.7□□□□□ -2.3
LINC00643Q86TS7 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC0.7□□□□□ -2.3
LINC00643Q86TS7 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC0.7□□□□□ -2.3
LINC00643Q86TS7 AC135279.1-201ENST00000543493 504 ntBASIC0.7□□□□□ -2.3
LINC00643Q86TS7 AC023813.2-201ENST00000564321 469 ntBASIC0.7□□□□□ -2.3
LINC00643Q86TS7 AC015720.1-201ENST00000565251 277 ntBASIC0.7□□□□□ -2.3
LINC00643Q86TS7 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC0.7□□□□□ -2.3
LINC00643Q86TS7 MIR1273D-201ENST00000577266 86 ntBASIC0.7□□□□□ -2.3
LINC00643Q86TS7 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC0.7□□□□□ -2.3
LINC00643Q86TS7 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC0.7□□□□□ -2.3
LINC00643Q86TS7 AL021707.7-201ENST00000607991 416 ntBASIC0.7□□□□□ -2.3
LINC00643Q86TS7 AC110792.4-201ENST00000609843 298 ntBASIC0.7□□□□□ -2.3
LINC00643Q86TS7 AC097655.1-201ENST00000635075 318 ntBASIC0.7□□□□□ -2.3
LINC00643Q86TS7 MNS1-201ENST00000260453 2023 ntAPPRIS P1 TSL 1 (best) BASIC0.69□□□□□ -2.3
LINC00643Q86TS7 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC0.69□□□□□ -2.3
LINC00643Q86TS7 NDUFS5P1-201ENST00000405668 289 ntBASIC0.69□□□□□ -2.3
LINC00643Q86TS7 RPL30P4-201ENST00000429309 333 ntBASIC0.69□□□□□ -2.3
LINC00643Q86TS7 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC0.69□□□□□ -2.3
LINC00643Q86TS7 AL022238.1-201ENST00000442557 355 ntBASIC0.69□□□□□ -2.3
LINC00643Q86TS7 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC0.69□□□□□ -2.3
LINC00643Q86TS7 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC0.69□□□□□ -2.3
LINC00643Q86TS7 ZNF736P6Y-201ENST00000447526 1213 ntBASIC0.69□□□□□ -2.3
LINC00643Q86TS7 RNU1-123P-201ENST00000458950 160 ntBASIC0.69□□□□□ -2.3
LINC00643Q86TS7 CEACAMP10-202ENST00000495431 496 ntBASIC0.69□□□□□ -2.3
LINC00643Q86TS7 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC0.69□□□□□ -2.3
LINC00643Q86TS7 RN7SKP283-201ENST00000517197 270 ntBASIC0.69□□□□□ -2.3
LINC00643Q86TS7 HSPE1P18-201ENST00000517602 280 ntBASIC0.69□□□□□ -2.3
LINC00643Q86TS7 LY96-202ENST00000518893 430 ntTSL 3 BASIC0.69□□□□□ -2.3
LINC00643Q86TS7 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC0.69□□□□□ -2.3
LINC00643Q86TS7 AP003122.3-201ENST00000526316 255 ntBASIC0.69□□□□□ -2.3
LINC00643Q86TS7 AP003033.1-201ENST00000527244 415 ntBASIC0.69□□□□□ -2.3
LINC00643Q86TS7 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC0.69□□□□□ -2.3
LINC00643Q86TS7 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC0.69□□□□□ -2.3
LINC00643Q86TS7 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC0.69□□□□□ -2.3
LINC00643Q86TS7 SNORD53B-201ENST00000577887 78 ntBASIC0.69□□□□□ -2.3
LINC00643Q86TS7 AC021549.1-201ENST00000580937 433 ntTSL 3 BASIC0.69□□□□□ -2.3
LINC00643Q86TS7 AC105245.1-201ENST00000581934 244 ntBASIC0.69□□□□□ -2.3
LINC00643Q86TS7 MIR4422-201ENST00000581938 83 ntBASIC0.69□□□□□ -2.3
LINC00643Q86TS7 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC0.69□□□□□ -2.3
LINC00643Q86TS7 AC012557.1-201ENST00000607115 611 ntBASIC0.69□□□□□ -2.3
LINC00643Q86TS7 AC090116.1-201ENST00000615679 446 ntBASIC0.69□□□□□ -2.3
LINC00643Q86TS7 AC008443.7-201ENST00000622195 246 ntBASIC0.69□□□□□ -2.3
LINC00643Q86TS7 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC0.69□□□□□ -2.3
LINC00643Q86TS7 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC0.69□□□□□ -2.3
LINC00643Q86TS7 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC0.69□□□□□ -2.3
LINC00643Q86TS7 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC0.68□□□□□ -2.3
LINC00643Q86TS7 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC0.68□□□□□ -2.3
LINC00643Q86TS7 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC0.68□□□□□ -2.3
LINC00643Q86TS7 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC0.68□□□□□ -2.3
LINC00643Q86TS7 SNORA40.19-201ENST00000390846 128 ntBASIC0.68□□□□□ -2.3
LINC00643Q86TS7 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC0.68□□□□□ -2.3
LINC00643Q86TS7 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC0.68□□□□□ -2.3
LINC00643Q86TS7 PAICSP7-201ENST00000419829 962 ntBASIC0.68□□□□□ -2.3
LINC00643Q86TS7 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC0.68□□□□□ -2.3
LINC00643Q86TS7 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC0.68□□□□□ -2.3
LINC00643Q86TS7 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC0.68□□□□□ -2.3
LINC00643Q86TS7 NUTF2P7-201ENST00000453086 375 ntBASIC0.68□□□□□ -2.3
LINC00643Q86TS7 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC0.68□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 97.9 ms