Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 RNU6-390P-201ENST00000516259 103 ntBASIC3.81□□□□□ -1.8
PTCHD3Q3KNS1 RNA5SP503-201ENST00000517047 117 ntBASIC3.81□□□□□ -1.8
PTCHD3Q3KNS1 SUB1P1-201ENST00000524415 382 ntBASIC3.81□□□□□ -1.8
PTCHD3Q3KNS1 AC103843.2-201ENST00000530523 682 ntBASIC3.81□□□□□ -1.8
PTCHD3Q3KNS1 AC109635.4-202ENST00000531666 412 ntBASIC3.81□□□□□ -1.8
PTCHD3Q3KNS1 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC3.81□□□□□ -1.8
PTCHD3Q3KNS1 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC3.81□□□□□ -1.8
PTCHD3Q3KNS1 HSPE1P5-201ENST00000561489 272 ntBASIC3.81□□□□□ -1.8
PTCHD3Q3KNS1 MIR5685-201ENST00000579080 79 ntBASIC3.81□□□□□ -1.8
PTCHD3Q3KNS1 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC3.81□□□□□ -1.8
PTCHD3Q3KNS1 BDH2P1-201ENST00000602288 736 ntBASIC3.81□□□□□ -1.8
PTCHD3Q3KNS1 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC3.81□□□□□ -1.8
PTCHD3Q3KNS1 AC063943.3-201ENST00000615562 356 ntBASIC3.81□□□□□ -1.8
PTCHD3Q3KNS1 AC104260.1-201ENST00000616660 539 ntBASIC3.81□□□□□ -1.8
PTCHD3Q3KNS1 AC011155.2-201ENST00000623202 216 ntBASIC3.81□□□□□ -1.8
PTCHD3Q3KNS1 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
PTCHD3Q3KNS1 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
PTCHD3Q3KNS1 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC3.81□□□□□ -1.8
PTCHD3Q3KNS1 MTND4P12-201ENST00000498999 1377 ntBASIC3.8□□□□□ -1.8
PTCHD3Q3KNS1 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
PTCHD3Q3KNS1 NACAP2-201ENST00000318548 624 ntBASIC3.8□□□□□ -1.8
PTCHD3Q3KNS1 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
PTCHD3Q3KNS1 DEFB108F-201ENST00000344638 222 ntBASIC3.8□□□□□ -1.8
PTCHD3Q3KNS1 SNORA62.3-201ENST00000365110 153 ntBASIC3.8□□□□□ -1.8
PTCHD3Q3KNS1 RNU6-946P-201ENST00000383878 107 ntBASIC3.8□□□□□ -1.8
PTCHD3Q3KNS1 NDUFS5P1-201ENST00000405668 289 ntBASIC3.8□□□□□ -1.8
PTCHD3Q3KNS1 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC3.8□□□□□ -1.8
PTCHD3Q3KNS1 MTCYBP8-201ENST00000422855 651 ntBASIC3.8□□□□□ -1.8
PTCHD3Q3KNS1 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC3.8□□□□□ -1.8
PTCHD3Q3KNS1 AL445584.1-201ENST00000431451 330 ntBASIC3.8□□□□□ -1.8
PTCHD3Q3KNS1 TRAPPC2P3-201ENST00000443200 321 ntBASIC3.8□□□□□ -1.8
PTCHD3Q3KNS1 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC3.8□□□□□ -1.8
PTCHD3Q3KNS1 RPS29P15-201ENST00000458329 171 ntBASIC3.8□□□□□ -1.8
PTCHD3Q3KNS1 HSPE1P6-201ENST00000479457 291 ntBASIC3.8□□□□□ -1.8
PTCHD3Q3KNS1 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC3.8□□□□□ -1.8
PTCHD3Q3KNS1 EIF4EP3-201ENST00000498782 656 ntBASIC3.8□□□□□ -1.8
PTCHD3Q3KNS1 AC008628.2-201ENST00000502605 298 ntBASIC3.8□□□□□ -1.8
PTCHD3Q3KNS1 AC092436.1-201ENST00000506450 503 ntBASIC3.8□□□□□ -1.8
PTCHD3Q3KNS1 AC098799.2-201ENST00000509466 868 ntBASIC3.8□□□□□ -1.8
PTCHD3Q3KNS1 AC114781.4-201ENST00000513707 639 ntBASIC3.8□□□□□ -1.8
PTCHD3Q3KNS1 MIR2114-201ENST00000516645 80 ntBASIC3.8□□□□□ -1.8
PTCHD3Q3KNS1 RNU6-352P-201ENST00000516908 107 ntBASIC3.8□□□□□ -1.8
PTCHD3Q3KNS1 RN7SKP258-201ENST00000517151 304 ntBASIC3.8□□□□□ -1.8
PTCHD3Q3KNS1 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC3.8□□□□□ -1.8
PTCHD3Q3KNS1 AP006587.4-201ENST00000526053 529 ntBASIC3.8□□□□□ -1.8
PTCHD3Q3KNS1 OR5B19P-201ENST00000531766 928 ntBASIC3.8□□□□□ -1.8
PTCHD3Q3KNS1 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC3.8□□□□□ -1.8
PTCHD3Q3KNS1 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC3.8□□□□□ -1.8
PTCHD3Q3KNS1 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC3.8□□□□□ -1.8
PTCHD3Q3KNS1 RPL23AP84-201ENST00000571193 464 ntBASIC3.8□□□□□ -1.8
PTCHD3Q3KNS1 MIR4703-201ENST00000577728 79 ntBASIC3.8□□□□□ -1.8
PTCHD3Q3KNS1 AC018638.8-201ENST00000588755 281 ntBASIC3.8□□□□□ -1.8
PTCHD3Q3KNS1 AC025946.2-201ENST00000603398 234 ntBASIC3.8□□□□□ -1.8
PTCHD3Q3KNS1 AC245389.1-201ENST00000605141 529 ntBASIC3.8□□□□□ -1.8
PTCHD3Q3KNS1 AL365204.3-201ENST00000612448 685 ntBASIC3.8□□□□□ -1.8
PTCHD3Q3KNS1 uc_338.32-201ENST00000615087 172 ntBASIC3.8□□□□□ -1.8
PTCHD3Q3KNS1 CCT7-217ENST00000626868 249 ntTSL 5 BASIC3.8□□□□□ -1.8
PTCHD3Q3KNS1 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
PTCHD3Q3KNS1 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
PTCHD3Q3KNS1 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC3.8□□□□□ -1.8
PTCHD3Q3KNS1 AP001350.1-201ENST00000601906 1524 ntBASIC3.8□□□□□ -1.8
PTCHD3Q3KNS1 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC3.8□□□□□ -1.8
PTCHD3Q3KNS1 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 AC116096.1-201ENST00000566804 2314 ntBASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 API5P2-201ENST00000397055 1498 ntBASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 AC008725.1-201ENST00000605123 2263 ntBASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 PTER-201ENST00000298942 3448 ntTSL 5 BASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 AC010733.2-201ENST00000589496 5702 ntBASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 RNU6-552P-201ENST00000362869 119 ntBASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 Y_RNA.86-201ENST00000363020 111 ntBASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 RNA5SP322-201ENST00000363617 119 ntBASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 RNU6-701P-201ENST00000384059 107 ntBASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 RNU2-41P-201ENST00000410991 178 ntBASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 AC068533.1-201ENST00000418542 415 ntBASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 AC008850.1-201ENST00000427546 362 ntBASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 ATP5HP2-201ENST00000433885 485 ntBASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 PMCHL2-203ENST00000457791 237 ntBASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 RPL21P11-201ENST00000461458 483 ntBASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 PPIAP15-201ENST00000479662 484 ntBASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 AC106872.2-201ENST00000494303 480 ntBASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 RPL23AP55-201ENST00000498163 452 ntBASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 AC078918.1-201ENST00000498515 228 ntBASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 HMGN1P12-201ENST00000499125 195 ntBASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 MTCO2P30-201ENST00000503662 364 ntBASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 SLC25A15P5-201ENST00000508033 253 ntBASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 AC108078.2-201ENST00000510750 236 ntBASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 AC010486.1-201ENST00000511793 424 ntBASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
PTCHD3Q3KNS1 AC008549.1-201ENST00000512900 643 ntBASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 80.9 ms