Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 RNA5SP27-201ENST00000363839 119 ntBASIC1.35□□□□□ -2.19
FOXA3P55318 RNU6-217P-201ENST00000384164 104 ntBASIC1.35□□□□□ -2.19
FOXA3P55318 MIR483-201ENST00000385070 76 ntBASIC1.35□□□□□ -2.19
FOXA3P55318 RNU6-77P-201ENST00000410554 91 ntBASIC1.35□□□□□ -2.19
FOXA3P55318 RNU2-49P-201ENST00000410666 184 ntBASIC1.35□□□□□ -2.19
FOXA3P55318 RNU4-53P-201ENST00000410828 140 ntBASIC1.35□□□□□ -2.19
FOXA3P55318 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC1.35□□□□□ -2.19
FOXA3P55318 MTCO1P57-201ENST00000432182 261 ntBASIC1.35□□□□□ -2.19
FOXA3P55318 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC1.35□□□□□ -2.19
FOXA3P55318 Z82210.1-201ENST00000440037 231 ntBASIC1.35□□□□□ -2.19
FOXA3P55318 BNIP3P2-201ENST00000441221 577 ntBASIC1.35□□□□□ -2.19
FOXA3P55318 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC1.35□□□□□ -2.19
FOXA3P55318 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC1.35□□□□□ -2.19
FOXA3P55318 AC025181.1-201ENST00000477507 416 ntBASIC1.35□□□□□ -2.19
FOXA3P55318 RPL21P99-201ENST00000480369 423 ntBASIC1.35□□□□□ -2.19
FOXA3P55318 IGJP1-201ENST00000522682 475 ntBASIC1.35□□□□□ -2.19
FOXA3P55318 ARL2BPP5-201ENST00000523141 481 ntBASIC1.35□□□□□ -2.19
FOXA3P55318 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC1.35□□□□□ -2.19
FOXA3P55318 AP005639.2-201ENST00000527592 928 ntBASIC1.35□□□□□ -2.19
FOXA3P55318 OR5AL2P-201ENST00000532185 920 ntBASIC1.35□□□□□ -2.19
FOXA3P55318 HSBP1P1-201ENST00000555205 166 ntBASIC1.35□□□□□ -2.19
FOXA3P55318 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC1.35□□□□□ -2.19
FOXA3P55318 AC009063.1-201ENST00000563342 702 ntBASIC1.35□□□□□ -2.19
FOXA3P55318 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC1.35□□□□□ -2.19
FOXA3P55318 AL671309.1-201ENST00000603750 544 ntBASIC1.35□□□□□ -2.19
FOXA3P55318 BNIP3P4-201ENST00000604946 565 ntBASIC1.35□□□□□ -2.19
FOXA3P55318 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC1.35□□□□□ -2.19
FOXA3P55318 ZNF702P-202ENST00000434269 1966 ntBASIC1.35□□□□□ -2.19
FOXA3P55318 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC1.35□□□□□ -2.19
FOXA3P55318 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.35□□□□□ -2.19
FOXA3P55318 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.34□□□□□ -2.19
FOXA3P55318 RNU6-1159P-201ENST00000362933 107 ntBASIC1.34□□□□□ -2.19
FOXA3P55318 RNU4-42P-201ENST00000364738 142 ntBASIC1.34□□□□□ -2.19
FOXA3P55318 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC1.34□□□□□ -2.19
FOXA3P55318 AL079342.1-201ENST00000401460 267 ntBASIC1.34□□□□□ -2.19
FOXA3P55318 RNU6ATAC38P-201ENST00000408119 126 ntBASIC1.34□□□□□ -2.19
FOXA3P55318 RPS20P15-201ENST00000412792 311 ntBASIC1.34□□□□□ -2.19
FOXA3P55318 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC1.34□□□□□ -2.19
FOXA3P55318 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC1.34□□□□□ -2.19
FOXA3P55318 PGBD4P6-201ENST00000421501 610 ntBASIC1.34□□□□□ -2.19
FOXA3P55318 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC1.34□□□□□ -2.19
FOXA3P55318 AC092047.1-201ENST00000424997 240 ntBASIC1.34□□□□□ -2.19
FOXA3P55318 THAP5P1-201ENST00000439089 262 ntBASIC1.34□□□□□ -2.19
FOXA3P55318 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC1.34□□□□□ -2.19
FOXA3P55318 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC1.34□□□□□ -2.19
FOXA3P55318 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC1.34□□□□□ -2.19
FOXA3P55318 AP1S2P1-201ENST00000457344 379 ntBASIC1.34□□□□□ -2.19
FOXA3P55318 AP001486.1-201ENST00000463339 476 ntBASIC1.34□□□□□ -2.19
FOXA3P55318 AC087884.1-201ENST00000469738 328 ntBASIC1.34□□□□□ -2.19
FOXA3P55318 HSPE1P6-201ENST00000479457 291 ntBASIC1.34□□□□□ -2.19
FOXA3P55318 OR9N1P-202ENST00000494289 481 ntBASIC1.34□□□□□ -2.19
FOXA3P55318 AC098591.2-201ENST00000510152 315 ntBASIC1.34□□□□□ -2.19
FOXA3P55318 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC1.34□□□□□ -2.19
FOXA3P55318 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC1.34□□□□□ -2.19
FOXA3P55318 CBX3P7-201ENST00000532876 502 ntBASIC1.34□□□□□ -2.19
FOXA3P55318 MYRFL-202ENST00000535034 881 ntTSL 1 (best) BASIC1.34□□□□□ -2.19
FOXA3P55318 VBP1-203ENST00000535916 944 ntTSL 2 BASIC1.34□□□□□ -2.19
FOXA3P55318 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC1.34□□□□□ -2.19
FOXA3P55318 AC093510.2-201ENST00000562820 896 ntBASIC1.34□□□□□ -2.19
FOXA3P55318 DEFB122-202ENST00000569013 197 ntBASIC1.34□□□□□ -2.19
FOXA3P55318 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC1.34□□□□□ -2.19
FOXA3P55318 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC1.34□□□□□ -2.19
FOXA3P55318 STARD13-AS-208ENST00000589472 859 ntTSL 5 BASIC1.34□□□□□ -2.19
FOXA3P55318 AL161729.4-201ENST00000604650 476 ntBASIC1.34□□□□□ -2.19
FOXA3P55318 BX322635.1-201ENST00000605804 496 ntBASIC1.34□□□□□ -2.19
FOXA3P55318 AC069294.1-201ENST00000608397 350 ntBASIC1.34□□□□□ -2.19
FOXA3P55318 AL589743.7-201ENST00000612637 233 ntBASIC1.34□□□□□ -2.19
FOXA3P55318 AC020658.4-201ENST00000613987 684 ntBASIC1.34□□□□□ -2.19
FOXA3P55318 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.34□□□□□ -2.2
FOXA3P55318 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC1.33□□□□□ -2.2
FOXA3P55318 MTCO1P4-201ENST00000520516 1409 ntBASIC1.33□□□□□ -2.2
FOXA3P55318 SNORA27.3-201ENST00000364937 134 ntBASIC1.33□□□□□ -2.2
FOXA3P55318 SNORA51.6-201ENST00000384151 125 ntBASIC1.33□□□□□ -2.2
FOXA3P55318 MIR525-201ENST00000384978 85 ntBASIC1.33□□□□□ -2.2
FOXA3P55318 HMGB1P17-201ENST00000403495 628 ntBASIC1.33□□□□□ -2.2
FOXA3P55318 AL161449.1-201ENST00000414531 1199 ntBASIC1.33□□□□□ -2.2
FOXA3P55318 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC1.33□□□□□ -2.2
FOXA3P55318 AL356320.1-201ENST00000429616 163 ntBASIC1.33□□□□□ -2.2
FOXA3P55318 DNAJC19P4-201ENST00000440115 345 ntBASIC1.33□□□□□ -2.2
FOXA3P55318 USP9YP15-201ENST00000442391 422 ntBASIC1.33□□□□□ -2.2
FOXA3P55318 RPL23AP6-201ENST00000446637 472 ntBASIC1.33□□□□□ -2.2
FOXA3P55318 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC1.33□□□□□ -2.2
FOXA3P55318 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC1.33□□□□□ -2.2
FOXA3P55318 AL121769.1-201ENST00000469473 401 ntBASIC1.33□□□□□ -2.2
FOXA3P55318 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC1.33□□□□□ -2.2
FOXA3P55318 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC1.33□□□□□ -2.2
FOXA3P55318 AC024579.1-201ENST00000503685 371 ntTSL 5 BASIC1.33□□□□□ -2.2
FOXA3P55318 RNU6-1256P-201ENST00000516539 103 ntBASIC1.33□□□□□ -2.2
FOXA3P55318 AP005435.4-201ENST00000529514 284 ntBASIC1.33□□□□□ -2.2
FOXA3P55318 AP000722.1-201ENST00000531176 775 ntTSL 3 BASIC1.33□□□□□ -2.2
FOXA3P55318 CBX3P4-201ENST00000538909 354 ntBASIC1.33□□□□□ -2.2
FOXA3P55318 AC084033.1-201ENST00000550830 633 ntBASIC1.33□□□□□ -2.2
FOXA3P55318 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC1.33□□□□□ -2.2
FOXA3P55318 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC1.33□□□□□ -2.2
FOXA3P55318 AC015727.1-201ENST00000572792 512 ntTSL 5 BASIC1.33□□□□□ -2.2
FOXA3P55318 MIR3162-201ENST00000581818 82 ntBASIC1.33□□□□□ -2.2
FOXA3P55318 AC243960.4-201ENST00000600532 288 ntBASIC1.33□□□□□ -2.2
FOXA3P55318 GAS5-AS1-201ENST00000602767 694 ntBASIC1.33□□□□□ -2.2
FOXA3P55318 LINC02098-202ENST00000609260 554 ntTSL 3 BASIC1.33□□□□□ -2.2
FOXA3P55318 TUG1_1.1-201ENST00000610654 145 ntBASIC1.33□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 97.9 ms