Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC106038.2-201ENST00000520706 568 ntBASIC2.55□□□□□ -2
COL4A4P53420 MAL2-205ENST00000521048 575 ntTSL 4 BASIC2.55□□□□□ -2
COL4A4P53420 CKS1BP7-201ENST00000522230 235 ntBASIC2.55□□□□□ -2
COL4A4P53420 AC124293.1-201ENST00000530034 493 ntBASIC2.55□□□□□ -2
COL4A4P53420 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC2.55□□□□□ -2
COL4A4P53420 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC2.55□□□□□ -2
COL4A4P53420 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC2.55□□□□□ -2
COL4A4P53420 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC2.55□□□□□ -2
COL4A4P53420 MEG8-218ENST00000556720 456 ntTSL 3 BASIC2.55□□□□□ -2
COL4A4P53420 AC012414.6-201ENST00000568241 401 ntBASIC2.55□□□□□ -2
COL4A4P53420 MTND1P15-201ENST00000579262 949 ntBASIC2.55□□□□□ -2
COL4A4P53420 FGF7P1-201ENST00000582820 288 ntBASIC2.55□□□□□ -2
COL4A4P53420 AC023043.3-201ENST00000593113 385 ntBASIC2.55□□□□□ -2
COL4A4P53420 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC2.55□□□□□ -2
COL4A4P53420 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC2.55□□□□□ -2
COL4A4P53420 AC090186.1-201ENST00000605991 572 ntBASIC2.55□□□□□ -2
COL4A4P53420 AL592148.2-201ENST00000612210 372 ntBASIC2.55□□□□□ -2
COL4A4P53420 AC063943.3-201ENST00000615562 356 ntBASIC2.55□□□□□ -2
COL4A4P53420 AC104260.1-201ENST00000616660 539 ntBASIC2.55□□□□□ -2
COL4A4P53420 U4.5-201ENST00000617137 123 ntBASIC2.55□□□□□ -2
COL4A4P53420 AL136981.2-201ENST00000617319 734 ntBASIC2.55□□□□□ -2
COL4A4P53420 FRG1HP-204ENST00000617940 757 ntBASIC2.55□□□□□ -2
COL4A4P53420 AC008443.7-201ENST00000622195 246 ntBASIC2.55□□□□□ -2
COL4A4P53420 AC109454.4-201ENST00000623411 649 ntBASIC2.55□□□□□ -2
COL4A4P53420 AC015726.3-201ENST00000624501 418 ntBASIC2.55□□□□□ -2
COL4A4P53420 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
COL4A4P53420 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC2.55□□□□□ -2
COL4A4P53420 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC2.55□□□□□ -2
COL4A4P53420 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC2.54□□□□□ -2
COL4A4P53420 ANKRD62P1-201ENST00000434304 1623 ntBASIC2.54□□□□□ -2
COL4A4P53420 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC2.54□□□□□ -2
COL4A4P53420 Y_RNA.61-201ENST00000362835 102 ntBASIC2.54□□□□□ -2
COL4A4P53420 Y_RNA.70-201ENST00000362886 110 ntBASIC2.54□□□□□ -2
COL4A4P53420 RNA5SP27-201ENST00000363839 119 ntBASIC2.54□□□□□ -2
COL4A4P53420 RNU6-1251P-201ENST00000364502 107 ntBASIC2.54□□□□□ -2
COL4A4P53420 Y_RNA.303-201ENST00000364998 94 ntBASIC2.54□□□□□ -2
COL4A4P53420 SNORA40.2-201ENST00000390847 128 ntBASIC2.54□□□□□ -2
COL4A4P53420 RNU6-757P-201ENST00000410334 100 ntBASIC2.54□□□□□ -2
COL4A4P53420 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC2.54□□□□□ -2
COL4A4P53420 TPMTP3-201ENST00000411928 735 ntBASIC2.54□□□□□ -2
COL4A4P53420 HMGB3P31-201ENST00000413333 595 ntBASIC2.54□□□□□ -2
COL4A4P53420 CYCSP46-201ENST00000423569 204 ntBASIC2.54□□□□□ -2
COL4A4P53420 AC010881.1-201ENST00000433830 235 ntBASIC2.54□□□□□ -2
COL4A4P53420 USP9YP35-201ENST00000435696 412 ntBASIC2.54□□□□□ -2
COL4A4P53420 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC2.54□□□□□ -2
COL4A4P53420 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC2.54□□□□□ -2
COL4A4P53420 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC2.54□□□□□ -2
COL4A4P53420 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC2.54□□□□□ -2
COL4A4P53420 RPL21P134-201ENST00000453468 483 ntBASIC2.54□□□□□ -2
COL4A4P53420 AC239798.3-201ENST00000454459 408 ntBASIC2.54□□□□□ -2
COL4A4P53420 AMD1P1-201ENST00000457220 922 ntBASIC2.54□□□□□ -2
COL4A4P53420 AC011979.1-201ENST00000472300 483 ntBASIC2.54□□□□□ -2
COL4A4P53420 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC2.54□□□□□ -2
COL4A4P53420 TRBV1-201ENST00000476502 284 ntBASIC2.54□□□□□ -2
COL4A4P53420 AC106872.3-201ENST00000495104 446 ntBASIC2.54□□□□□ -2
COL4A4P53420 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC2.54□□□□□ -2
COL4A4P53420 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC2.54□□□□□ -2
COL4A4P53420 AC005178.1-201ENST00000508392 440 ntBASIC2.54□□□□□ -2
COL4A4P53420 AC079395.1-201ENST00000510981 262 ntBASIC2.54□□□□□ -2
COL4A4P53420 RNU6-506P-201ENST00000516553 94 ntBASIC2.54□□□□□ -2
COL4A4P53420 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC2.54□□□□□ -2
COL4A4P53420 AP003467.2-201ENST00000520175 319 ntBASIC2.54□□□□□ -2
COL4A4P53420 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC2.54□□□□□ -2
COL4A4P53420 PDCD5P1-201ENST00000543528 309 ntBASIC2.54□□□□□ -2
COL4A4P53420 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC2.54□□□□□ -2
COL4A4P53420 OR6C7P-201ENST00000547875 934 ntBASIC2.54□□□□□ -2
COL4A4P53420 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC2.54□□□□□ -2
COL4A4P53420 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC2.54□□□□□ -2
COL4A4P53420 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC2.54□□□□□ -2
COL4A4P53420 AC090912.2-203ENST00000581177 477 ntTSL 3 BASIC2.54□□□□□ -2
COL4A4P53420 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC2.54□□□□□ -2
COL4A4P53420 AC078795.3-201ENST00000602913 472 ntBASIC2.54□□□□□ -2
COL4A4P53420 AC069545.1-201ENST00000605671 358 ntBASIC2.54□□□□□ -2
COL4A4P53420 AC068276.1-201ENST00000605793 379 ntBASIC2.54□□□□□ -2
COL4A4P53420 AC008083.4-201ENST00000615076 444 ntBASIC2.54□□□□□ -2
COL4A4P53420 AC124864.2-201ENST00000624736 186 ntBASIC2.54□□□□□ -2
COL4A4P53420 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC2.54□□□□□ -2
COL4A4P53420 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.54□□□□□ -2
COL4A4P53420 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC2.54□□□□□ -2
COL4A4P53420 AC016716.1-201ENST00000265882 708 ntBASIC2.53□□□□□ -2
COL4A4P53420 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC2.53□□□□□ -2
COL4A4P53420 OR1L1-202ENST00000373686 1083 ntBASIC2.53□□□□□ -2
COL4A4P53420 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC2.53□□□□□ -2
COL4A4P53420 DYNLT3P1-201ENST00000378574 347 ntBASIC2.53□□□□□ -2
COL4A4P53420 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
COL4A4P53420 RNU6-114P-201ENST00000384704 105 ntBASIC2.53□□□□□ -2
COL4A4P53420 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC2.53□□□□□ -2
COL4A4P53420 AC138393.2-201ENST00000414742 246 ntBASIC2.53□□□□□ -2
COL4A4P53420 DNAJA1P2-201ENST00000421360 1197 ntBASIC2.53□□□□□ -2
COL4A4P53420 AL034379.1-201ENST00000423216 253 ntBASIC2.53□□□□□ -2
COL4A4P53420 SLC44A3-AS1-205ENST00000424505 612 ntBASIC2.53□□□□□ -2
COL4A4P53420 C1DP1-201ENST00000426049 402 ntBASIC2.53□□□□□ -2
COL4A4P53420 Z98742.2-201ENST00000431564 187 ntBASIC2.53□□□□□ -2
COL4A4P53420 RAB11AP1-201ENST00000442978 646 ntBASIC2.53□□□□□ -2
COL4A4P53420 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC2.53□□□□□ -2
COL4A4P53420 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC2.53□□□□□ -2
COL4A4P53420 AL034418.1-201ENST00000448675 860 ntBASIC2.53□□□□□ -2
COL4A4P53420 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC2.53□□□□□ -2
COL4A4P53420 AC003071.1-201ENST00000451219 789 ntBASIC2.53□□□□□ -2
COL4A4P53420 KATNBL1P6-201ENST00000453433 915 ntBASIC2.53□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 113.9 ms