Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 RNU6-754P-201ENST00000391166 107 ntBASIC3.19□□□□□ -1.9
HNF4AP41235 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
HNF4AP41235 RN7SKP220-201ENST00000410611 288 ntBASIC3.19□□□□□ -1.9
HNF4AP41235 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC3.19□□□□□ -1.9
HNF4AP41235 AL445669.1-201ENST00000426743 755 ntBASIC3.19□□□□□ -1.9
HNF4AP41235 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.19□□□□□ -1.9
HNF4AP41235 AL159987.2-201ENST00000432754 307 ntBASIC3.19□□□□□ -1.9
HNF4AP41235 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC3.19□□□□□ -1.9
HNF4AP41235 CST9LP2-201ENST00000437612 320 ntBASIC3.19□□□□□ -1.9
HNF4AP41235 ATP5C1P1-201ENST00000441945 895 ntBASIC3.19□□□□□ -1.9
HNF4AP41235 PRDX3P3-201ENST00000447765 522 ntBASIC3.19□□□□□ -1.9
HNF4AP41235 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.19□□□□□ -1.9
HNF4AP41235 RNA5SP269-201ENST00000459032 137 ntBASIC3.19□□□□□ -1.9
HNF4AP41235 RNU7-23P-201ENST00000459465 62 ntBASIC3.19□□□□□ -1.9
HNF4AP41235 AC008155.2-201ENST00000464337 397 ntBASIC3.19□□□□□ -1.9
HNF4AP41235 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC3.19□□□□□ -1.9
HNF4AP41235 AC093809.1-201ENST00000509155 340 ntBASIC3.19□□□□□ -1.9
HNF4AP41235 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.19□□□□□ -1.9
HNF4AP41235 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC3.19□□□□□ -1.9
HNF4AP41235 RNU6-56P-201ENST00000516986 93 ntBASIC3.19□□□□□ -1.9
HNF4AP41235 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC3.19□□□□□ -1.9
HNF4AP41235 CCNG2P1-201ENST00000549521 1000 ntBASIC3.19□□□□□ -1.9
HNF4AP41235 SETP2-201ENST00000553886 926 ntBASIC3.19□□□□□ -1.9
HNF4AP41235 AC068135.2-201ENST00000569293 1028 ntBASIC3.19□□□□□ -1.9
HNF4AP41235 MIR544B-201ENST00000582372 78 ntBASIC3.19□□□□□ -1.9
HNF4AP41235 MIR4276-201ENST00000584832 70 ntBASIC3.19□□□□□ -1.9
HNF4AP41235 AC008739.2-201ENST00000597006 317 ntBASIC3.19□□□□□ -1.9
HNF4AP41235 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
HNF4AP41235 AC027807.2-201ENST00000616099 408 ntBASIC3.19□□□□□ -1.9
HNF4AP41235 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC3.19□□□□□ -1.9
HNF4AP41235 AC084035.1-201ENST00000634543 607 ntBASIC3.19□□□□□ -1.9
HNF4AP41235 AC138915.1-201ENST00000565427 1685 ntBASIC3.19□□□□□ -1.9
HNF4AP41235 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
HNF4AP41235 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC3.18□□□□□ -1.9
HNF4AP41235 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
HNF4AP41235 MIR148B-201ENST00000362252 99 ntBASIC3.18□□□□□ -1.9
HNF4AP41235 RNU6-223P-201ENST00000362830 107 ntBASIC3.18□□□□□ -1.9
HNF4AP41235 RNU5F-6P-201ENST00000362979 116 ntBASIC3.18□□□□□ -1.9
HNF4AP41235 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC3.18□□□□□ -1.9
HNF4AP41235 SNORA75-201ENST00000384158 137 ntBASIC3.18□□□□□ -1.9
HNF4AP41235 MIR320C1-201ENST00000408566 88 ntBASIC3.18□□□□□ -1.9
HNF4AP41235 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
HNF4AP41235 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC3.18□□□□□ -1.9
HNF4AP41235 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC3.18□□□□□ -1.9
HNF4AP41235 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC3.18□□□□□ -1.9
HNF4AP41235 CDK8P2-201ENST00000415020 547 ntBASIC3.18□□□□□ -1.9
HNF4AP41235 AC099548.1-201ENST00000421443 426 ntBASIC3.18□□□□□ -1.9
HNF4AP41235 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC3.18□□□□□ -1.9
HNF4AP41235 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.18□□□□□ -1.9
HNF4AP41235 AC097713.2-201ENST00000430199 356 ntBASIC3.18□□□□□ -1.9
HNF4AP41235 USP9YP14-201ENST00000430663 563 ntBASIC3.18□□□□□ -1.9
HNF4AP41235 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC3.18□□□□□ -1.9
HNF4AP41235 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC3.18□□□□□ -1.9
HNF4AP41235 AL714022.1-201ENST00000439897 151 ntBASIC3.18□□□□□ -1.9
HNF4AP41235 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC3.18□□□□□ -1.9
HNF4AP41235 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC3.18□□□□□ -1.9
HNF4AP41235 GDI2P2-201ENST00000445131 608 ntBASIC3.18□□□□□ -1.9
HNF4AP41235 AL358232.1-201ENST00000448030 501 ntBASIC3.18□□□□□ -1.9
HNF4AP41235 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.18□□□□□ -1.9
HNF4AP41235 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC3.18□□□□□ -1.9
HNF4AP41235 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
HNF4AP41235 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC3.18□□□□□ -1.9
HNF4AP41235 LARP1BP2-201ENST00000486594 519 ntBASIC3.18□□□□□ -1.9
HNF4AP41235 RPL21P13-201ENST00000488305 481 ntBASIC3.18□□□□□ -1.9
HNF4AP41235 AC021678.1-201ENST00000505195 936 ntBASIC3.18□□□□□ -1.9
HNF4AP41235 POU5F1P7-201ENST00000508759 541 ntBASIC3.18□□□□□ -1.9
HNF4AP41235 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC3.18□□□□□ -1.9
HNF4AP41235 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC3.18□□□□□ -1.9
HNF4AP41235 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.18□□□□□ -1.9
HNF4AP41235 AP004247.1-201ENST00000531556 1289 ntBASIC3.18□□□□□ -1.9
HNF4AP41235 AC013828.2-201ENST00000532487 235 ntBASIC3.18□□□□□ -1.9
HNF4AP41235 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC3.18□□□□□ -1.9
HNF4AP41235 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC3.18□□□□□ -1.9
HNF4AP41235 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC3.18□□□□□ -1.9
HNF4AP41235 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC3.18□□□□□ -1.9
HNF4AP41235 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC3.18□□□□□ -1.9
HNF4AP41235 BNIP3P23-201ENST00000599655 511 ntBASIC3.18□□□□□ -1.9
HNF4AP41235 AC010620.2-201ENST00000600135 313 ntBASIC3.18□□□□□ -1.9
HNF4AP41235 AC015871.2-201ENST00000603605 948 ntBASIC3.18□□□□□ -1.9
HNF4AP41235 AL161729.4-201ENST00000604650 476 ntBASIC3.18□□□□□ -1.9
HNF4AP41235 AC100793.4-201ENST00000613683 429 ntBASIC3.18□□□□□ -1.9
HNF4AP41235 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.18□□□□□ -1.9
HNF4AP41235 MIR6075-201ENST00000620782 95 ntBASIC3.18□□□□□ -1.9
HNF4AP41235 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
HNF4AP41235 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
HNF4AP41235 MTND4P5-201ENST00000435821 1374 ntBASIC3.17□□□□□ -1.9
HNF4AP41235 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
HNF4AP41235 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
HNF4AP41235 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
HNF4AP41235 SNORD56.3-201ENST00000363507 71 ntBASIC3.17□□□□□ -1.9
HNF4AP41235 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
HNF4AP41235 RNU6-432P-201ENST00000384196 109 ntBASIC3.17□□□□□ -1.9
HNF4AP41235 Y_RNA.505-201ENST00000384489 102 ntBASIC3.17□□□□□ -1.9
HNF4AP41235 MIR767-201ENST00000390228 109 ntBASIC3.17□□□□□ -1.9
HNF4AP41235 RPS27AP14-201ENST00000422868 454 ntBASIC3.17□□□□□ -1.9
HNF4AP41235 AL365496.1-201ENST00000426885 215 ntBASIC3.17□□□□□ -1.9
HNF4AP41235 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC3.17□□□□□ -1.9
HNF4AP41235 RPL37P21-201ENST00000435890 276 ntBASIC3.17□□□□□ -1.9
HNF4AP41235 AL031667.1-201ENST00000440222 725 ntBASIC3.17□□□□□ -1.9
HNF4AP41235 BNIP3P2-201ENST00000441221 577 ntBASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 121.3 ms