Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC2.53□□□□□ -2
SHMT2P34897 AC005951.2-201ENST00000576282 495 ntBASIC2.53□□□□□ -2
SHMT2P34897 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
SHMT2P34897 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.53□□□□□ -2.01
SHMT2P34897 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.53□□□□□ -2.01
SHMT2P34897 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
SHMT2P34897 VTRNA1-1-201ENST00000363120 99 ntBASIC2.52□□□□□ -2.01
SHMT2P34897 RNU6-853P-201ENST00000364306 107 ntBASIC2.52□□□□□ -2.01
SHMT2P34897 SNORA72.3-201ENST00000365074 132 ntBASIC2.52□□□□□ -2.01
SHMT2P34897 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
SHMT2P34897 U3.20-201ENST00000390909 217 ntBASIC2.52□□□□□ -2.01
SHMT2P34897 RSL24D1P4-201ENST00000400938 484 ntBASIC2.52□□□□□ -2.01
SHMT2P34897 RPS4XP8-201ENST00000402039 771 ntBASIC2.52□□□□□ -2.01
SHMT2P34897 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC2.52□□□□□ -2.01
SHMT2P34897 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC2.52□□□□□ -2.01
SHMT2P34897 AL008987.1-201ENST00000415528 237 ntBASIC2.52□□□□□ -2.01
SHMT2P34897 AC018630.2-202ENST00000422992 927 ntBASIC2.52□□□□□ -2.01
SHMT2P34897 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC2.52□□□□□ -2.01
SHMT2P34897 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC2.52□□□□□ -2.01
SHMT2P34897 KRTAP19-11P-201ENST00000439851 104 ntBASIC2.52□□□□□ -2.01
SHMT2P34897 AC011816.1-201ENST00000441346 546 ntBASIC2.52□□□□□ -2.01
SHMT2P34897 AC108938.1-201ENST00000451204 136 ntBASIC2.52□□□□□ -2.01
SHMT2P34897 CACYBPP2-201ENST00000453625 678 ntBASIC2.52□□□□□ -2.01
SHMT2P34897 SNORD11.1-201ENST00000459482 85 ntBASIC2.52□□□□□ -2.01
SHMT2P34897 AC133134.1-201ENST00000466800 359 ntBASIC2.52□□□□□ -2.01
SHMT2P34897 AL135752.1-201ENST00000479477 471 ntBASIC2.52□□□□□ -2.01
SHMT2P34897 AC147055.4-201ENST00000504399 745 ntBASIC2.52□□□□□ -2.01
SHMT2P34897 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC2.52□□□□□ -2.01
SHMT2P34897 SEM1P1-201ENST00000506694 209 ntBASIC2.52□□□□□ -2.01
SHMT2P34897 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC2.52□□□□□ -2.01
SHMT2P34897 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC2.52□□□□□ -2.01
SHMT2P34897 AC090802.1-201ENST00000520870 445 ntTSL 2 BASIC2.52□□□□□ -2.01
SHMT2P34897 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC2.52□□□□□ -2.01
SHMT2P34897 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC2.52□□□□□ -2.01
SHMT2P34897 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC2.52□□□□□ -2.01
SHMT2P34897 AC136618.2-201ENST00000575091 400 ntBASIC2.52□□□□□ -2.01
SHMT2P34897 MIR4446-201ENST00000578505 67 ntBASIC2.52□□□□□ -2.01
SHMT2P34897 AC061975.8-201ENST00000587058 721 ntBASIC2.52□□□□□ -2.01
SHMT2P34897 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC2.52□□□□□ -2.01
SHMT2P34897 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC2.52□□□□□ -2.01
SHMT2P34897 AC024560.3-201ENST00000608482 349 ntBASIC2.52□□□□□ -2.01
SHMT2P34897 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC2.52□□□□□ -2.01
SHMT2P34897 AC009268.2-201ENST00000621925 457 ntBASIC2.52□□□□□ -2.01
SHMT2P34897 AL159972.1-201ENST00000625150 448 ntBASIC2.52□□□□□ -2.01
SHMT2P34897 FO624990.1-201ENST00000636373 85 ntBASIC2.52□□□□□ -2.01
SHMT2P34897 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC2.52□□□□□ -2.01
SHMT2P34897 AC009902.3-201ENST00000606235 2172 ntBASIC2.51□□□□□ -2.01
SHMT2P34897 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
SHMT2P34897 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.51□□□□□ -2.01
SHMT2P34897 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC2.51□□□□□ -2.01
SHMT2P34897 RNA5SP210-201ENST00000391034 120 ntBASIC2.51□□□□□ -2.01
SHMT2P34897 RPA3-203ENST00000401447 414 ntTSL 3 BASIC2.51□□□□□ -2.01
SHMT2P34897 AL139095.1-201ENST00000404326 391 ntBASIC2.51□□□□□ -2.01
SHMT2P34897 MTCO2P21-201ENST00000419780 677 ntBASIC2.51□□□□□ -2.01
SHMT2P34897 HMGN2P30-201ENST00000423237 256 ntBASIC2.51□□□□□ -2.01
SHMT2P34897 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC2.51□□□□□ -2.01
SHMT2P34897 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC2.51□□□□□ -2.01
SHMT2P34897 AC009237.8-201ENST00000445492 379 ntBASIC2.51□□□□□ -2.01
SHMT2P34897 SNRPGP6-201ENST00000451124 220 ntBASIC2.51□□□□□ -2.01
SHMT2P34897 AC010099.1-201ENST00000455434 375 ntBASIC2.51□□□□□ -2.01
SHMT2P34897 AL031183.1-201ENST00000457667 207 ntBASIC2.51□□□□□ -2.01
SHMT2P34897 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC2.51□□□□□ -2.01
SHMT2P34897 SETP11-201ENST00000473027 690 ntBASIC2.51□□□□□ -2.01
SHMT2P34897 AIG1P1-201ENST00000503376 148 ntBASIC2.51□□□□□ -2.01
SHMT2P34897 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC2.51□□□□□ -2.01
SHMT2P34897 AC034244.1-201ENST00000507687 207 ntBASIC2.51□□□□□ -2.01
SHMT2P34897 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC2.51□□□□□ -2.01
SHMT2P34897 HSPE1P23-201ENST00000509838 286 ntBASIC2.51□□□□□ -2.01
SHMT2P34897 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC2.51□□□□□ -2.01
SHMT2P34897 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC2.51□□□□□ -2.01
SHMT2P34897 MTND5P4-201ENST00000514978 288 ntBASIC2.51□□□□□ -2.01
SHMT2P34897 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC2.51□□□□□ -2.01
SHMT2P34897 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC2.51□□□□□ -2.01
SHMT2P34897 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC2.51□□□□□ -2.01
SHMT2P34897 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC2.51□□□□□ -2.01
SHMT2P34897 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC2.51□□□□□ -2.01
SHMT2P34897 AC023050.2-201ENST00000544968 387 ntBASIC2.51□□□□□ -2.01
SHMT2P34897 AC123904.3-201ENST00000547218 814 ntBASIC2.51□□□□□ -2.01
SHMT2P34897 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC2.51□□□□□ -2.01
SHMT2P34897 AC124947.2-202ENST00000552735 133 ntBASIC2.51□□□□□ -2.01
SHMT2P34897 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC2.51□□□□□ -2.01
SHMT2P34897 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.51□□□□□ -2.01
SHMT2P34897 ANKRD36BP2-206ENST00000575193 1245 ntBASIC2.51□□□□□ -2.01
SHMT2P34897 MIR3609-201ENST00000582661 80 ntBASIC2.51□□□□□ -2.01
SHMT2P34897 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC2.51□□□□□ -2.01
SHMT2P34897 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC2.51□□□□□ -2.01
SHMT2P34897 GLUD1P4-201ENST00000590914 418 ntBASIC2.51□□□□□ -2.01
SHMT2P34897 AC106791.2-201ENST00000604680 391 ntBASIC2.51□□□□□ -2.01
SHMT2P34897 RNU6-88P-201ENST00000606801 100 ntBASIC2.51□□□□□ -2.01
SHMT2P34897 DLEU1_2.1-201ENST00000617920 342 ntBASIC2.51□□□□□ -2.01
SHMT2P34897 MIR4275-201ENST00000636486 87 ntBASIC2.51□□□□□ -2.01
SHMT2P34897 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC2.51□□□□□ -2.01
SHMT2P34897 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.51□□□□□ -2.01
SHMT2P34897 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.51□□□□□ -2.01
SHMT2P34897 AL136360.1-201ENST00000503377 1900 ntBASIC2.5□□□□□ -2.01
SHMT2P34897 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC2.5□□□□□ -2.01
SHMT2P34897 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC2.5□□□□□ -2.01
SHMT2P34897 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
SHMT2P34897 SNORD113-6-201ENST00000363345 75 ntBASIC2.5□□□□□ -2.01
SHMT2P34897 SNORA23-201ENST00000365128 182 ntBASIC2.5□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 142.1 ms