Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 Y_RNA.665-201ENST00000516177 98 ntBASIC4.59□□□□□ -1.67
COL6A1P12109 RPL7P20-201ENST00000520308 745 ntBASIC4.59□□□□□ -1.67
COL6A1P12109 SUMO2P20-201ENST00000520803 283 ntBASIC4.59□□□□□ -1.67
COL6A1P12109 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC4.59□□□□□ -1.67
COL6A1P12109 OR4P1P-201ENST00000530808 1136 ntBASIC4.59□□□□□ -1.67
COL6A1P12109 MGST1-215ENST00000540056 546 ntTSL 3 BASIC4.59□□□□□ -1.67
COL6A1P12109 FRG2DP-202ENST00000566967 323 ntBASIC4.59□□□□□ -1.67
COL6A1P12109 AC007151.1-201ENST00000572774 483 ntBASIC4.59□□□□□ -1.67
COL6A1P12109 COX6CP3-201ENST00000580869 223 ntBASIC4.59□□□□□ -1.67
COL6A1P12109 FP236240.3-201ENST00000623061 327 ntBASIC4.59□□□□□ -1.67
COL6A1P12109 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC4.59□□□□□ -1.67
COL6A1P12109 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.59□□□□□ -1.67
COL6A1P12109 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC4.59□□□□□ -1.68
COL6A1P12109 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.68
COL6A1P12109 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC4.59□□□□□ -1.68
COL6A1P12109 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC4.59□□□□□ -1.68
COL6A1P12109 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL6A1P12109 AL365440.1-201ENST00000436135 2167 ntBASIC4.58□□□□□ -1.68
COL6A1P12109 AC027290.2-201ENST00000623210 18662 ntBASIC4.58□□□□□ -1.68
COL6A1P12109 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC4.58□□□□□ -1.68
COL6A1P12109 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.58□□□□□ -1.68
COL6A1P12109 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.58□□□□□ -1.68
COL6A1P12109 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
COL6A1P12109 HSPE1P11-201ENST00000339579 310 ntBASIC4.58□□□□□ -1.68
COL6A1P12109 RNU6-50P-201ENST00000362356 103 ntBASIC4.58□□□□□ -1.68
COL6A1P12109 RNU6-989P-201ENST00000362756 107 ntBASIC4.58□□□□□ -1.68
COL6A1P12109 Y_RNA.111-201ENST00000363248 100 ntBASIC4.58□□□□□ -1.68
COL6A1P12109 SNORA63C-201ENST00000364578 129 ntBASIC4.58□□□□□ -1.68
COL6A1P12109 SNORD42.2-201ENST00000365570 69 ntBASIC4.58□□□□□ -1.68
COL6A1P12109 Y_RNA.373-201ENST00000365600 103 ntBASIC4.58□□□□□ -1.68
COL6A1P12109 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC4.58□□□□□ -1.68
COL6A1P12109 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC4.58□□□□□ -1.68
COL6A1P12109 OR6C66P-201ENST00000414917 930 ntBASIC4.58□□□□□ -1.68
COL6A1P12109 AP000907.1-201ENST00000428428 510 ntBASIC4.58□□□□□ -1.68
COL6A1P12109 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC4.58□□□□□ -1.68
COL6A1P12109 TBCAP1-201ENST00000436520 327 ntBASIC4.58□□□□□ -1.68
COL6A1P12109 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC4.58□□□□□ -1.68
COL6A1P12109 TRAPPC2P3-201ENST00000443200 321 ntBASIC4.58□□□□□ -1.68
COL6A1P12109 Y_RNA.635-201ENST00000459041 101 ntBASIC4.58□□□□□ -1.68
COL6A1P12109 VN1R17P-201ENST00000472048 1090 ntBASIC4.58□□□□□ -1.68
COL6A1P12109 AC126389.1-201ENST00000477436 290 ntBASIC4.58□□□□□ -1.68
COL6A1P12109 RPS29P19-201ENST00000479709 171 ntBASIC4.58□□□□□ -1.68
COL6A1P12109 AC090096.1-201ENST00000489168 390 ntBASIC4.58□□□□□ -1.68
COL6A1P12109 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC4.58□□□□□ -1.68
COL6A1P12109 RNU2-10P-201ENST00000516375 211 ntBASIC4.58□□□□□ -1.68
COL6A1P12109 RNU7-51P-201ENST00000516560 62 ntBASIC4.58□□□□□ -1.68
COL6A1P12109 RN7SKP219-201ENST00000516825 296 ntBASIC4.58□□□□□ -1.68
COL6A1P12109 SNORA25.17-201ENST00000517184 124 ntBASIC4.58□□□□□ -1.68
COL6A1P12109 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC4.58□□□□□ -1.68
COL6A1P12109 CYCSP30-201ENST00000546447 172 ntBASIC4.58□□□□□ -1.68
COL6A1P12109 AC128657.1-201ENST00000549459 145 ntBASIC4.58□□□□□ -1.68
COL6A1P12109 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC4.58□□□□□ -1.68
COL6A1P12109 AL022099.1-201ENST00000604551 712 ntBASIC4.58□□□□□ -1.68
COL6A1P12109 AL121992.2-201ENST00000606262 256 ntBASIC4.58□□□□□ -1.68
COL6A1P12109 AC012531.5-201ENST00000611375 151 ntBASIC4.58□□□□□ -1.68
COL6A1P12109 AC040896.1-201ENST00000613819 479 ntBASIC4.58□□□□□ -1.68
COL6A1P12109 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC4.58□□□□□ -1.68
COL6A1P12109 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC4.58□□□□□ -1.68
COL6A1P12109 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
COL6A1P12109 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL6A1P12109 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
COL6A1P12109 AF127577.6-201ENST00000623352 2191 ntBASIC4.58□□□□□ -1.68
COL6A1P12109 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL6A1P12109 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL6A1P12109 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL6A1P12109 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
COL6A1P12109 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
COL6A1P12109 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.57□□□□□ -1.68
COL6A1P12109 Y_RNA.22-201ENST00000362492 102 ntBASIC4.57□□□□□ -1.68
COL6A1P12109 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
COL6A1P12109 RNU6-641P-201ENST00000384006 107 ntBASIC4.57□□□□□ -1.68
COL6A1P12109 Y_RNA.530-201ENST00000384587 101 ntBASIC4.57□□□□□ -1.68
COL6A1P12109 MIR19A-201ENST00000384878 82 ntBASIC4.57□□□□□ -1.68
COL6A1P12109 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
COL6A1P12109 NDUFB4P4-201ENST00000404822 243 ntBASIC4.57□□□□□ -1.68
COL6A1P12109 RNU2-29P-201ENST00000410423 189 ntBASIC4.57□□□□□ -1.68
COL6A1P12109 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC4.57□□□□□ -1.68
COL6A1P12109 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC4.57□□□□□ -1.68
COL6A1P12109 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC4.57□□□□□ -1.68
COL6A1P12109 RAC1P7-201ENST00000445367 377 ntBASIC4.57□□□□□ -1.68
COL6A1P12109 IGKV1OR-3-201ENST00000446944 348 ntBASIC4.57□□□□□ -1.68
COL6A1P12109 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC4.57□□□□□ -1.68
COL6A1P12109 RPS29P15-201ENST00000458329 171 ntBASIC4.57□□□□□ -1.68
COL6A1P12109 RPS4XP10-201ENST00000465034 731 ntBASIC4.57□□□□□ -1.68
COL6A1P12109 MTND4P17-201ENST00000470444 350 ntBASIC4.57□□□□□ -1.68
COL6A1P12109 AC116562.3-201ENST00000506136 177 ntBASIC4.57□□□□□ -1.68
COL6A1P12109 FAM206BP-201ENST00000510179 541 ntBASIC4.57□□□□□ -1.68
COL6A1P12109 SNORA31.20-201ENST00000517111 133 ntBASIC4.57□□□□□ -1.68
COL6A1P12109 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC4.57□□□□□ -1.68
COL6A1P12109 NARSP2-201ENST00000518524 679 ntBASIC4.57□□□□□ -1.68
COL6A1P12109 AC068587.5-201ENST00000528506 175 ntBASIC4.57□□□□□ -1.68
COL6A1P12109 ELOCP31-201ENST00000540463 467 ntBASIC4.57□□□□□ -1.68
COL6A1P12109 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC4.57□□□□□ -1.68
COL6A1P12109 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC4.57□□□□□ -1.68
COL6A1P12109 AC080078.3-201ENST00000605407 463 ntBASIC4.57□□□□□ -1.68
COL6A1P12109 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC4.57□□□□□ -1.68
COL6A1P12109 uc_338.15-201ENST00000615470 191 ntBASIC4.57□□□□□ -1.68
COL6A1P12109 AC040168.1-201ENST00000623594 991 ntBASIC4.57□□□□□ -1.68
COL6A1P12109 U6.105-201ENST00000637379 88 ntBASIC4.57□□□□□ -1.68
COL6A1P12109 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 99.1 ms