Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 AC022493.1-201ENST00000492984 337 ntBASIC5.24□□□□□ -1.57
USP3Q9Y6I4 SUMO2P6-201ENST00000505273 288 ntBASIC5.24□□□□□ -1.57
USP3Q9Y6I4 RNU1-86P-201ENST00000516108 154 ntBASIC5.24□□□□□ -1.57
USP3Q9Y6I4 RNU1-107P-201ENST00000516617 154 ntBASIC5.24□□□□□ -1.57
USP3Q9Y6I4 Y_RNA.703-201ENST00000516846 111 ntBASIC5.24□□□□□ -1.57
USP3Q9Y6I4 AC008489.1-201ENST00000524271 483 ntBASIC5.24□□□□□ -1.57
USP3Q9Y6I4 AL590705.4-201ENST00000532209 134 ntBASIC5.24□□□□□ -1.57
USP3Q9Y6I4 AC006349.1-201ENST00000555526 235 ntBASIC5.24□□□□□ -1.57
USP3Q9Y6I4 AC005951.2-201ENST00000576282 495 ntBASIC5.24□□□□□ -1.57
USP3Q9Y6I4 AC098826.3-201ENST00000603823 466 ntBASIC5.24□□□□□ -1.57
USP3Q9Y6I4 AC123912.5-201ENST00000605470 343 ntBASIC5.24□□□□□ -1.57
USP3Q9Y6I4 AC024940.4-201ENST00000605507 246 ntBASIC5.24□□□□□ -1.57
USP3Q9Y6I4 AC087385.3-201ENST00000620477 187 ntBASIC5.24□□□□□ -1.57
USP3Q9Y6I4 MIR6730-201ENST00000622213 67 ntBASIC5.24□□□□□ -1.57
USP3Q9Y6I4 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC5.24□□□□□ -1.57
USP3Q9Y6I4 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
USP3Q9Y6I4 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
USP3Q9Y6I4 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC5.24□□□□□ -1.57
USP3Q9Y6I4 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
USP3Q9Y6I4 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC5.24□□□□□ -1.57
USP3Q9Y6I4 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC5.24□□□□□ -1.57
USP3Q9Y6I4 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
USP3Q9Y6I4 SMG1P6-201ENST00000532337 2930 ntBASIC5.24□□□□□ -1.57
USP3Q9Y6I4 AL450345.1-202ENST00000605741 3881 ntBASIC5.23□□□□□ -1.57
USP3Q9Y6I4 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC5.23□□□□□ -1.57
USP3Q9Y6I4 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
USP3Q9Y6I4 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
USP3Q9Y6I4 UBE2L2-201ENST00000254302 429 ntBASIC5.23□□□□□ -1.57
USP3Q9Y6I4 MIR412-201ENST00000362142 91 ntBASIC5.23□□□□□ -1.57
USP3Q9Y6I4 RNU6-545P-201ENST00000362681 104 ntBASIC5.23□□□□□ -1.57
USP3Q9Y6I4 RNU6-249P-201ENST00000363016 102 ntBASIC5.23□□□□□ -1.57
USP3Q9Y6I4 SNORA36C-201ENST00000384289 132 ntBASIC5.23□□□□□ -1.57
USP3Q9Y6I4 RPS29P13-201ENST00000402041 169 ntBASIC5.23□□□□□ -1.57
USP3Q9Y6I4 AL133270.1-201ENST00000402635 279 ntBASIC5.23□□□□□ -1.57
USP3Q9Y6I4 Y_RNA.793-201ENST00000411222 111 ntBASIC5.23□□□□□ -1.57
USP3Q9Y6I4 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC5.23□□□□□ -1.57
USP3Q9Y6I4 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC5.23□□□□□ -1.57
USP3Q9Y6I4 MTND3P9-201ENST00000429526 346 ntBASIC5.23□□□□□ -1.57
USP3Q9Y6I4 RPS27P18-201ENST00000431701 247 ntBASIC5.23□□□□□ -1.57
USP3Q9Y6I4 BX679664.1-201ENST00000434429 253 ntBASIC5.23□□□□□ -1.57
USP3Q9Y6I4 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC5.23□□□□□ -1.57
USP3Q9Y6I4 PIGFP3-201ENST00000441918 722 ntBASIC5.23□□□□□ -1.57
USP3Q9Y6I4 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC5.23□□□□□ -1.57
USP3Q9Y6I4 NDUFB4P10-201ENST00000452541 359 ntBASIC5.23□□□□□ -1.57
USP3Q9Y6I4 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC5.23□□□□□ -1.57
USP3Q9Y6I4 AC012158.1-204ENST00000483430 465 ntBASIC5.23□□□□□ -1.57
USP3Q9Y6I4 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC5.23□□□□□ -1.57
USP3Q9Y6I4 AC008694.2-201ENST00000517591 306 ntBASIC5.23□□□□□ -1.57
USP3Q9Y6I4 AC109479.2-201ENST00000517842 174 ntBASIC5.23□□□□□ -1.57
USP3Q9Y6I4 TRAV37-201ENST00000553906 342 ntBASIC5.23□□□□□ -1.57
USP3Q9Y6I4 AC009318.2-201ENST00000610917 651 ntBASIC5.23□□□□□ -1.57
USP3Q9Y6I4 BX005214.3-202ENST00000619809 325 ntBASIC5.23□□□□□ -1.57
USP3Q9Y6I4 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
USP3Q9Y6I4 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
USP3Q9Y6I4 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC5.23□□□□□ -1.57
USP3Q9Y6I4 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
USP3Q9Y6I4 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
USP3Q9Y6I4 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
USP3Q9Y6I4 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
USP3Q9Y6I4 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
USP3Q9Y6I4 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC5.23□□□□□ -1.57
USP3Q9Y6I4 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
USP3Q9Y6I4 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC5.22□□□□□ -1.57
USP3Q9Y6I4 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC5.22□□□□□ -1.57
USP3Q9Y6I4 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC5.22□□□□□ -1.57
USP3Q9Y6I4 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC5.22□□□□□ -1.57
USP3Q9Y6I4 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC5.22□□□□□ -1.57
USP3Q9Y6I4 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
USP3Q9Y6I4 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC5.22□□□□□ -1.57
USP3Q9Y6I4 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
USP3Q9Y6I4 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
USP3Q9Y6I4 Y_RNA.54-201ENST00000362766 105 ntBASIC5.22□□□□□ -1.57
USP3Q9Y6I4 Y_RNA.65-201ENST00000362846 100 ntBASIC5.22□□□□□ -1.57
USP3Q9Y6I4 SNORA70.10-201ENST00000384515 134 ntBASIC5.22□□□□□ -1.57
USP3Q9Y6I4 MTCO2P33-201ENST00000402100 465 ntBASIC5.22□□□□□ -1.57
USP3Q9Y6I4 RNU2-33P-201ENST00000410344 192 ntBASIC5.22□□□□□ -1.57
USP3Q9Y6I4 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC5.22□□□□□ -1.57
USP3Q9Y6I4 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC5.22□□□□□ -1.57
USP3Q9Y6I4 MTATP6P4-201ENST00000427725 675 ntBASIC5.22□□□□□ -1.57
USP3Q9Y6I4 AL592045.1-201ENST00000429867 352 ntBASIC5.22□□□□□ -1.57
USP3Q9Y6I4 RPL23AP25-201ENST00000430973 463 ntBASIC5.22□□□□□ -1.57
USP3Q9Y6I4 GEMIN8P3-201ENST00000445417 720 ntBASIC5.22□□□□□ -1.57
USP3Q9Y6I4 AL691482.1-201ENST00000453255 87 ntBASIC5.22□□□□□ -1.57
USP3Q9Y6I4 snoU13.20-201ENST00000459180 104 ntBASIC5.22□□□□□ -1.57
USP3Q9Y6I4 AC098869.1-201ENST00000481627 292 ntBASIC5.22□□□□□ -1.57
USP3Q9Y6I4 UBE2Q2P9-201ENST00000490086 202 ntBASIC5.22□□□□□ -1.57
USP3Q9Y6I4 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC5.22□□□□□ -1.57
USP3Q9Y6I4 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC5.22□□□□□ -1.57
USP3Q9Y6I4 RNU6-1338P-201ENST00000516328 91 ntBASIC5.22□□□□□ -1.57
USP3Q9Y6I4 DEFB108E-201ENST00000524692 240 ntBASIC5.22□□□□□ -1.57
USP3Q9Y6I4 AC021006.3-201ENST00000530771 192 ntBASIC5.22□□□□□ -1.57
USP3Q9Y6I4 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC5.22□□□□□ -1.57
USP3Q9Y6I4 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC5.22□□□□□ -1.57
USP3Q9Y6I4 MIR4436B2-201ENST00000581415 91 ntBASIC5.22□□□□□ -1.57
USP3Q9Y6I4 MIR4436B1-201ENST00000583272 91 ntBASIC5.22□□□□□ -1.57
USP3Q9Y6I4 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC5.22□□□□□ -1.57
USP3Q9Y6I4 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC5.22□□□□□ -1.57
USP3Q9Y6I4 AC006557.5-201ENST00000603126 811 ntBASIC5.22□□□□□ -1.57
USP3Q9Y6I4 AC010900.2-201ENST00000604508 210 ntBASIC5.22□□□□□ -1.57
USP3Q9Y6I4 AP001005.3-201ENST00000622049 129 ntBASIC5.22□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 124.8 ms