Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AL049539.1-201ENST00000611964 459 ntBASIC5.11□□□□□ -1.59
CCDC39Q9UFE4 DLEU2_5.1-201ENST00000615567 84 ntBASIC5.11□□□□□ -1.59
CCDC39Q9UFE4 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC5.11□□□□□ -1.59
CCDC39Q9UFE4 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
CCDC39Q9UFE4 AC103858.2-201ENST00000621471 543 ntBASIC5.11□□□□□ -1.59
CCDC39Q9UFE4 AC244100.1-202ENST00000621554 382 ntBASIC5.11□□□□□ -1.59
CCDC39Q9UFE4 AC091953.3-201ENST00000623220 236 ntBASIC5.11□□□□□ -1.59
CCDC39Q9UFE4 AL159972.1-201ENST00000625150 448 ntBASIC5.11□□□□□ -1.59
CCDC39Q9UFE4 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC5.11□□□□□ -1.59
CCDC39Q9UFE4 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC5.11□□□□□ -1.59
CCDC39Q9UFE4 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC5.11□□□□□ -1.59
CCDC39Q9UFE4 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC5.11□□□□□ -1.59
CCDC39Q9UFE4 AC007529.1-201ENST00000418574 2178 ntBASIC5.11□□□□□ -1.59
CCDC39Q9UFE4 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
CCDC39Q9UFE4 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC5.1□□□□□ -1.59
CCDC39Q9UFE4 AC015813.6-201ENST00000624409 5808 ntBASIC5.1□□□□□ -1.59
CCDC39Q9UFE4 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC5.1□□□□□ -1.59
CCDC39Q9UFE4 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC5.1□□□□□ -1.59
CCDC39Q9UFE4 MFSD8-242ENST00000641690 4199 ntBASIC5.1□□□□□ -1.59
CCDC39Q9UFE4 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC39Q9UFE4 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC5.1□□□□□ -1.59
CCDC39Q9UFE4 AC019155.1-201ENST00000382242 574 ntBASIC5.1□□□□□ -1.59
CCDC39Q9UFE4 Y_RNA.424-201ENST00000384063 103 ntBASIC5.1□□□□□ -1.59
CCDC39Q9UFE4 RNU6-432P-201ENST00000384196 109 ntBASIC5.1□□□□□ -1.59
CCDC39Q9UFE4 Y_RNA.785-201ENST00000384290 109 ntBASIC5.1□□□□□ -1.59
CCDC39Q9UFE4 Y_RNA.483-201ENST00000384380 101 ntBASIC5.1□□□□□ -1.59
CCDC39Q9UFE4 MIR708-201ENST00000390708 88 ntBASIC5.1□□□□□ -1.59
CCDC39Q9UFE4 RNA5SP397-201ENST00000391323 118 ntBASIC5.1□□□□□ -1.59
CCDC39Q9UFE4 MIR1302-6-201ENST00000408466 90 ntBASIC5.1□□□□□ -1.59
CCDC39Q9UFE4 Y_RNA.594-201ENST00000410373 140 ntBASIC5.1□□□□□ -1.59
CCDC39Q9UFE4 RNU6-1050P-201ENST00000410388 107 ntBASIC5.1□□□□□ -1.59
CCDC39Q9UFE4 RN7SKP235-201ENST00000410662 305 ntBASIC5.1□□□□□ -1.59
CCDC39Q9UFE4 RPS23P10-201ENST00000416185 486 ntBASIC5.1□□□□□ -1.59
CCDC39Q9UFE4 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC5.1□□□□□ -1.59
CCDC39Q9UFE4 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC5.1□□□□□ -1.59
CCDC39Q9UFE4 RPL23AP74-201ENST00000437246 471 ntBASIC5.1□□□□□ -1.59
CCDC39Q9UFE4 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC5.1□□□□□ -1.59
CCDC39Q9UFE4 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC5.1□□□□□ -1.59
CCDC39Q9UFE4 RPL23AP15-201ENST00000450202 459 ntBASIC5.1□□□□□ -1.59
CCDC39Q9UFE4 HMGB3P30-201ENST00000457863 606 ntBASIC5.1□□□□□ -1.59
CCDC39Q9UFE4 AC010326.1-201ENST00000462726 602 ntBASIC5.1□□□□□ -1.59
CCDC39Q9UFE4 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC5.1□□□□□ -1.59
CCDC39Q9UFE4 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC39Q9UFE4 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC5.1□□□□□ -1.59
CCDC39Q9UFE4 HIGD1AP13-201ENST00000509878 289 ntBASIC5.1□□□□□ -1.59
CCDC39Q9UFE4 RNU6-120P-201ENST00000516077 103 ntBASIC5.1□□□□□ -1.59
CCDC39Q9UFE4 RNU4-77P-201ENST00000516692 156 ntBASIC5.1□□□□□ -1.59
CCDC39Q9UFE4 SLC2A3P1-201ENST00000519666 1451 ntBASIC5.1□□□□□ -1.59
CCDC39Q9UFE4 IGHV3-76-201ENST00000522465 295 ntBASIC5.1□□□□□ -1.59
CCDC39Q9UFE4 AC022790.1-201ENST00000522872 204 ntBASIC5.1□□□□□ -1.59
CCDC39Q9UFE4 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC39Q9UFE4 OR4P1P-201ENST00000530808 1136 ntBASIC5.1□□□□□ -1.59
CCDC39Q9UFE4 AL137161.1-201ENST00000532231 390 ntBASIC5.1□□□□□ -1.59
CCDC39Q9UFE4 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC5.1□□□□□ -1.59
CCDC39Q9UFE4 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC39Q9UFE4 AC051619.2-201ENST00000559063 397 ntBASIC5.1□□□□□ -1.59
CCDC39Q9UFE4 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC5.1□□□□□ -1.59
CCDC39Q9UFE4 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC5.1□□□□□ -1.59
CCDC39Q9UFE4 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC5.1□□□□□ -1.59
CCDC39Q9UFE4 MIR4480-201ENST00000582492 71 ntBASIC5.1□□□□□ -1.59
CCDC39Q9UFE4 NXPH1-205ENST00000602349 1953 ntBASIC5.1□□□□□ -1.59
CCDC39Q9UFE4 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
CCDC39Q9UFE4 DUSP12P1-201ENST00000612874 516 ntBASIC5.1□□□□□ -1.59
CCDC39Q9UFE4 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC5.1□□□□□ -1.59
CCDC39Q9UFE4 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC5.1□□□□□ -1.59
CCDC39Q9UFE4 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
CCDC39Q9UFE4 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC39Q9UFE4 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC5.09□□□□□ -1.59
CCDC39Q9UFE4 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC5.09□□□□□ -1.59
CCDC39Q9UFE4 AC139769.1-204ENST00000472297 1931 ntBASIC5.09□□□□□ -1.59
CCDC39Q9UFE4 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
CCDC39Q9UFE4 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
CCDC39Q9UFE4 RN7SKP103-201ENST00000363848 320 ntBASIC5.09□□□□□ -1.59
CCDC39Q9UFE4 Y_RNA.222-201ENST00000364264 102 ntBASIC5.09□□□□□ -1.59
CCDC39Q9UFE4 RNU1-63P-201ENST00000383902 164 ntBASIC5.09□□□□□ -1.59
CCDC39Q9UFE4 RNU6-641P-201ENST00000384006 107 ntBASIC5.09□□□□□ -1.59
CCDC39Q9UFE4 Y_RNA.562-201ENST00000384695 113 ntBASIC5.09□□□□□ -1.59
CCDC39Q9UFE4 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC5.09□□□□□ -1.59
CCDC39Q9UFE4 RNU2-23P-201ENST00000410545 195 ntBASIC5.09□□□□□ -1.59
CCDC39Q9UFE4 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC5.09□□□□□ -1.59
CCDC39Q9UFE4 MAP1LC3BP1-201ENST00000417653 379 ntBASIC5.09□□□□□ -1.59
CCDC39Q9UFE4 AL606753.1-201ENST00000427435 87 ntBASIC5.09□□□□□ -1.59
CCDC39Q9UFE4 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC5.09□□□□□ -1.59
CCDC39Q9UFE4 AL359265.2-201ENST00000434367 631 ntBASIC5.09□□□□□ -1.59
CCDC39Q9UFE4 AC105402.2-201ENST00000438503 358 ntBASIC5.09□□□□□ -1.59
CCDC39Q9UFE4 AC006466.1-201ENST00000438721 289 ntBASIC5.09□□□□□ -1.59
CCDC39Q9UFE4 RPL23AP93-201ENST00000440847 484 ntBASIC5.09□□□□□ -1.59
CCDC39Q9UFE4 RPL21P133-201ENST00000443666 476 ntBASIC5.09□□□□□ -1.59
CCDC39Q9UFE4 AC012671.1-201ENST00000451912 203 ntBASIC5.09□□□□□ -1.59
CCDC39Q9UFE4 IFNWP4-201ENST00000453148 294 ntBASIC5.09□□□□□ -1.59
CCDC39Q9UFE4 MTND4LP30-201ENST00000454092 297 ntBASIC5.09□□□□□ -1.59
CCDC39Q9UFE4 AC112492.4-201ENST00000456549 352 ntBASIC5.09□□□□□ -1.59
CCDC39Q9UFE4 PRELID3BP1-201ENST00000457142 540 ntBASIC5.09□□□□□ -1.59
CCDC39Q9UFE4 CREM-226ENST00000469949 721 ntTSL 3 BASIC5.09□□□□□ -1.59
CCDC39Q9UFE4 MED28P2-201ENST00000475771 317 ntBASIC5.09□□□□□ -1.59
CCDC39Q9UFE4 AC114801.2-201ENST00000503825 781 ntBASIC5.09□□□□□ -1.59
CCDC39Q9UFE4 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC5.09□□□□□ -1.59
CCDC39Q9UFE4 DEFB109D-201ENST00000529497 240 ntBASIC5.09□□□□□ -1.59
CCDC39Q9UFE4 AC022080.3-201ENST00000544433 482 ntBASIC5.09□□□□□ -1.59
CCDC39Q9UFE4 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC5.09□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 117.4 ms