Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AL138827.1-201ENST00000402666 306 ntBASIC2.81□□□□□ -1.96
LHX3Q9UBR4 RN7SKP140-201ENST00000411196 284 ntBASIC2.81□□□□□ -1.96
LHX3Q9UBR4 AC011233.1-201ENST00000422812 283 ntBASIC2.81□□□□□ -1.96
LHX3Q9UBR4 TRIAP1P1-201ENST00000427062 225 ntBASIC2.81□□□□□ -1.96
LHX3Q9UBR4 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC2.81□□□□□ -1.96
LHX3Q9UBR4 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC2.81□□□□□ -1.96
LHX3Q9UBR4 TRIM60P18-201ENST00000441518 828 ntBASIC2.81□□□□□ -1.96
LHX3Q9UBR4 RPL7P36-201ENST00000444633 681 ntBASIC2.81□□□□□ -1.96
LHX3Q9UBR4 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC2.81□□□□□ -1.96
LHX3Q9UBR4 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC2.81□□□□□ -1.96
LHX3Q9UBR4 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC2.81□□□□□ -1.96
LHX3Q9UBR4 AC072039.1-201ENST00000477611 581 ntBASIC2.81□□□□□ -1.96
LHX3Q9UBR4 AL135752.1-201ENST00000479477 471 ntBASIC2.81□□□□□ -1.96
LHX3Q9UBR4 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
LHX3Q9UBR4 MTCYBP35-201ENST00000503630 1137 ntBASIC2.81□□□□□ -1.96
LHX3Q9UBR4 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC2.81□□□□□ -1.96
LHX3Q9UBR4 NRON-201ENST00000517270 370 ntBASIC2.81□□□□□ -1.96
LHX3Q9UBR4 NAP1L1P1-201ENST00000524793 1063 ntBASIC2.81□□□□□ -1.96
LHX3Q9UBR4 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC2.81□□□□□ -1.96
LHX3Q9UBR4 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC2.81□□□□□ -1.96
LHX3Q9UBR4 GTF3AP2-201ENST00000557014 266 ntBASIC2.81□□□□□ -1.96
LHX3Q9UBR4 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC2.81□□□□□ -1.96
LHX3Q9UBR4 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC2.81□□□□□ -1.96
LHX3Q9UBR4 ZNF861P-201ENST00000588126 639 ntBASIC2.81□□□□□ -1.96
LHX3Q9UBR4 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC2.81□□□□□ -1.96
LHX3Q9UBR4 AC112187.2-201ENST00000604345 283 ntBASIC2.81□□□□□ -1.96
LHX3Q9UBR4 ATP1B3P1-201ENST00000605365 821 ntBASIC2.81□□□□□ -1.96
LHX3Q9UBR4 AC007038.2-201ENST00000608095 740 ntBASIC2.81□□□□□ -1.96
LHX3Q9UBR4 AC063944.3-201ENST00000609969 533 ntBASIC2.81□□□□□ -1.96
LHX3Q9UBR4 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
LHX3Q9UBR4 SDR42E1P2-201ENST00000614861 481 ntBASIC2.81□□□□□ -1.96
LHX3Q9UBR4 AC017037.3-201ENST00000625016 472 ntBASIC2.81□□□□□ -1.96
LHX3Q9UBR4 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC2.81□□□□□ -1.96
LHX3Q9UBR4 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
LHX3Q9UBR4 CCT4P2-201ENST00000233836 1548 ntBASIC2.81□□□□□ -1.96
LHX3Q9UBR4 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
LHX3Q9UBR4 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC2.81□□□□□ -1.96
LHX3Q9UBR4 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
LHX3Q9UBR4 AC006378.2-201ENST00000623178 2476 ntBASIC2.81□□□□□ -1.96
LHX3Q9UBR4 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
LHX3Q9UBR4 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
LHX3Q9UBR4 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC2.81□□□□□ -1.96
LHX3Q9UBR4 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC2.8□□□□□ -1.96
LHX3Q9UBR4 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC2.8□□□□□ -1.96
LHX3Q9UBR4 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
LHX3Q9UBR4 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC2.8□□□□□ -1.96
LHX3Q9UBR4 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC2.8□□□□□ -1.96
LHX3Q9UBR4 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
LHX3Q9UBR4 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
LHX3Q9UBR4 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC2.8□□□□□ -1.96
LHX3Q9UBR4 RPL9P7-201ENST00000330965 580 ntBASIC2.8□□□□□ -1.96
LHX3Q9UBR4 RNU6-799P-201ENST00000363567 107 ntBASIC2.8□□□□□ -1.96
LHX3Q9UBR4 RNU6-7-201ENST00000364784 107 ntBASIC2.8□□□□□ -1.96
LHX3Q9UBR4 RNU6-8-201ENST00000365467 107 ntBASIC2.8□□□□□ -1.96
LHX3Q9UBR4 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC2.8□□□□□ -1.96
LHX3Q9UBR4 U3.26-201ENST00000391236 204 ntBASIC2.8□□□□□ -1.96
LHX3Q9UBR4 AC119751.3-201ENST00000399720 670 ntBASIC2.8□□□□□ -1.96
LHX3Q9UBR4 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
LHX3Q9UBR4 Z85995.1-201ENST00000415547 335 ntBASIC2.8□□□□□ -1.96
LHX3Q9UBR4 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC2.8□□□□□ -1.96
LHX3Q9UBR4 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC2.8□□□□□ -1.96
LHX3Q9UBR4 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC2.8□□□□□ -1.96
LHX3Q9UBR4 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC2.8□□□□□ -1.96
LHX3Q9UBR4 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC2.8□□□□□ -1.96
LHX3Q9UBR4 MTCO3P45-201ENST00000443036 613 ntBASIC2.8□□□□□ -1.96
LHX3Q9UBR4 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC2.8□□□□□ -1.96
LHX3Q9UBR4 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC2.8□□□□□ -1.96
LHX3Q9UBR4 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC2.8□□□□□ -1.96
LHX3Q9UBR4 snoU13.28-201ENST00000459235 104 ntBASIC2.8□□□□□ -1.96
LHX3Q9UBR4 LINC00888-204ENST00000487386 421 ntBASIC2.8□□□□□ -1.96
LHX3Q9UBR4 RNU6-678P-201ENST00000516832 109 ntBASIC2.8□□□□□ -1.96
LHX3Q9UBR4 RNU6-928P-201ENST00000516876 104 ntBASIC2.8□□□□□ -1.96
LHX3Q9UBR4 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC2.8□□□□□ -1.96
LHX3Q9UBR4 AP002748.2-201ENST00000528671 348 ntBASIC2.8□□□□□ -1.96
LHX3Q9UBR4 AP000857.1-201ENST00000532151 543 ntBASIC2.8□□□□□ -1.96
LHX3Q9UBR4 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC2.8□□□□□ -1.96
LHX3Q9UBR4 ZNF321P-202ENST00000550843 495 ntBASIC2.8□□□□□ -1.96
LHX3Q9UBR4 AL133153.1-201ENST00000557756 303 ntBASIC2.8□□□□□ -1.96
LHX3Q9UBR4 AMZ2P1-203ENST00000565833 850 ntBASIC2.8□□□□□ -1.96
LHX3Q9UBR4 AC002400.1-201ENST00000569310 726 ntBASIC2.8□□□□□ -1.96
LHX3Q9UBR4 AC005951.1-201ENST00000576706 485 ntBASIC2.8□□□□□ -1.96
LHX3Q9UBR4 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
LHX3Q9UBR4 ELOCP29-201ENST00000588193 334 ntBASIC2.8□□□□□ -1.96
LHX3Q9UBR4 AC068790.3-201ENST00000602988 553 ntBASIC2.8□□□□□ -1.96
LHX3Q9UBR4 AC091965.4-201ENST00000607691 587 ntBASIC2.8□□□□□ -1.96
LHX3Q9UBR4 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC2.8□□□□□ -1.96
LHX3Q9UBR4 AC004696.1-201ENST00000614345 607 ntBASIC2.8□□□□□ -1.96
LHX3Q9UBR4 AC012150.2-201ENST00000621300 544 ntBASIC2.8□□□□□ -1.96
LHX3Q9UBR4 AP002791.1-201ENST00000623291 381 ntBASIC2.8□□□□□ -1.96
LHX3Q9UBR4 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC2.8□□□□□ -1.96
LHX3Q9UBR4 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC2.8□□□□□ -1.96
LHX3Q9UBR4 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
LHX3Q9UBR4 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
LHX3Q9UBR4 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC2.79□□□□□ -1.96
LHX3Q9UBR4 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC2.79□□□□□ -1.96
LHX3Q9UBR4 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
LHX3Q9UBR4 RNU6-741P-201ENST00000383889 107 ntBASIC2.79□□□□□ -1.96
LHX3Q9UBR4 MIR19A-201ENST00000384878 82 ntBASIC2.79□□□□□ -1.96
LHX3Q9UBR4 RPL23AP39-201ENST00000415533 405 ntBASIC2.79□□□□□ -1.96
LHX3Q9UBR4 AL451054.2-201ENST00000420896 202 ntBASIC2.79□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 114.9 ms