Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 AC034229.4-201ENST00000607861 441 ntBASIC2.99□□□□□ -1.93
VPS54Q9P1Q0 AC072039.2-201ENST00000608883 439 ntBASIC2.99□□□□□ -1.93
VPS54Q9P1Q0 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC2.99□□□□□ -1.93
VPS54Q9P1Q0 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
VPS54Q9P1Q0 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC2.99□□□□□ -1.93
VPS54Q9P1Q0 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
VPS54Q9P1Q0 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC2.98□□□□□ -1.93
VPS54Q9P1Q0 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC2.98□□□□□ -1.93
VPS54Q9P1Q0 SNORD62.1-201ENST00000362541 86 ntBASIC2.98□□□□□ -1.93
VPS54Q9P1Q0 RNU6-637P-201ENST00000384050 107 ntBASIC2.98□□□□□ -1.93
VPS54Q9P1Q0 MIR1290-201ENST00000408735 78 ntBASIC2.98□□□□□ -1.93
VPS54Q9P1Q0 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC2.98□□□□□ -1.93
VPS54Q9P1Q0 HIGD1AP15-201ENST00000416198 280 ntBASIC2.98□□□□□ -1.93
VPS54Q9P1Q0 RPL7P10-201ENST00000417407 739 ntBASIC2.98□□□□□ -1.93
VPS54Q9P1Q0 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC2.98□□□□□ -1.93
VPS54Q9P1Q0 NUP35P1-201ENST00000422734 947 ntBASIC2.98□□□□□ -1.93
VPS54Q9P1Q0 AC019097.1-201ENST00000424783 735 ntBASIC2.98□□□□□ -1.93
VPS54Q9P1Q0 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC2.98□□□□□ -1.93
VPS54Q9P1Q0 AL354941.1-201ENST00000438600 464 ntBASIC2.98□□□□□ -1.93
VPS54Q9P1Q0 AC073174.1-201ENST00000444155 415 ntTSL 5 BASIC2.98□□□□□ -1.93
VPS54Q9P1Q0 OR6C5P-201ENST00000452388 923 ntBASIC2.98□□□□□ -1.93
VPS54Q9P1Q0 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC2.98□□□□□ -1.93
VPS54Q9P1Q0 AL109741.2-201ENST00000455561 343 ntBASIC2.98□□□□□ -1.93
VPS54Q9P1Q0 RPS29P12-201ENST00000460178 152 ntBASIC2.98□□□□□ -1.93
VPS54Q9P1Q0 AC004924.1-201ENST00000480160 781 ntBASIC2.98□□□□□ -1.93
VPS54Q9P1Q0 AL049874.1-201ENST00000489560 388 ntBASIC2.98□□□□□ -1.93
VPS54Q9P1Q0 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC2.98□□□□□ -1.93
VPS54Q9P1Q0 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC2.98□□□□□ -1.93
VPS54Q9P1Q0 LTV1P1-201ENST00000510683 1237 ntBASIC2.98□□□□□ -1.93
VPS54Q9P1Q0 AC112673.1-201ENST00000513168 575 ntBASIC2.98□□□□□ -1.93
VPS54Q9P1Q0 AC096725.1-201ENST00000514266 313 ntBASIC2.98□□□□□ -1.93
VPS54Q9P1Q0 RNA5SP282-201ENST00000516355 108 ntBASIC2.98□□□□□ -1.93
VPS54Q9P1Q0 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC2.98□□□□□ -1.93
VPS54Q9P1Q0 MAL2-206ENST00000522187 547 ntTSL 4 BASIC2.98□□□□□ -1.93
VPS54Q9P1Q0 CKS1BP7-201ENST00000522230 235 ntBASIC2.98□□□□□ -1.93
VPS54Q9P1Q0 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC2.98□□□□□ -1.93
VPS54Q9P1Q0 AC243972.3-201ENST00000539655 198 ntBASIC2.98□□□□□ -1.93
VPS54Q9P1Q0 OR7K1P-201ENST00000546439 926 ntBASIC2.98□□□□□ -1.93
VPS54Q9P1Q0 AC123904.3-201ENST00000547218 814 ntBASIC2.98□□□□□ -1.93
VPS54Q9P1Q0 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC2.98□□□□□ -1.93
VPS54Q9P1Q0 AC103710.4-201ENST00000609301 899 ntBASIC2.98□□□□□ -1.93
VPS54Q9P1Q0 AL138880.2-201ENST00000616214 239 ntBASIC2.98□□□□□ -1.93
VPS54Q9P1Q0 AL603758.1-201ENST00000618654 241 ntBASIC2.98□□□□□ -1.93
VPS54Q9P1Q0 AC007490.1-201ENST00000624321 703 ntBASIC2.98□□□□□ -1.93
VPS54Q9P1Q0 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC2.98□□□□□ -1.93
VPS54Q9P1Q0 AC099063.3-201ENST00000642066 185 ntBASIC2.98□□□□□ -1.93
VPS54Q9P1Q0 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.98□□□□□ -1.93
VPS54Q9P1Q0 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
VPS54Q9P1Q0 ANKRD26P2-201ENST00000445530 1710 ntBASIC2.97□□□□□ -1.93
VPS54Q9P1Q0 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC2.97□□□□□ -1.93
VPS54Q9P1Q0 RNU6-799P-201ENST00000363567 107 ntBASIC2.97□□□□□ -1.93
VPS54Q9P1Q0 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC2.97□□□□□ -1.93
VPS54Q9P1Q0 AL139039.1-201ENST00000401900 692 ntBASIC2.97□□□□□ -1.93
VPS54Q9P1Q0 RNA5SP184-201ENST00000411071 108 ntBASIC2.97□□□□□ -1.93
VPS54Q9P1Q0 AC018630.2-202ENST00000422992 927 ntBASIC2.97□□□□□ -1.93
VPS54Q9P1Q0 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC2.97□□□□□ -1.93
VPS54Q9P1Q0 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC2.97□□□□□ -1.93
VPS54Q9P1Q0 UBE2V1P13-201ENST00000436983 439 ntBASIC2.97□□□□□ -1.93
VPS54Q9P1Q0 RSU1P2-202ENST00000437884 485 ntBASIC2.97□□□□□ -1.93
VPS54Q9P1Q0 RPL21P2-201ENST00000440049 481 ntBASIC2.97□□□□□ -1.93
VPS54Q9P1Q0 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC2.97□□□□□ -1.93
VPS54Q9P1Q0 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC2.97□□□□□ -1.93
VPS54Q9P1Q0 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC2.97□□□□□ -1.93
VPS54Q9P1Q0 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.97□□□□□ -1.93
VPS54Q9P1Q0 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC2.97□□□□□ -1.93
VPS54Q9P1Q0 AP003461.1-201ENST00000528866 78 ntBASIC2.97□□□□□ -1.93
VPS54Q9P1Q0 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC2.97□□□□□ -1.93
VPS54Q9P1Q0 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC2.97□□□□□ -1.93
VPS54Q9P1Q0 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC2.97□□□□□ -1.93
VPS54Q9P1Q0 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC2.97□□□□□ -1.93
VPS54Q9P1Q0 AC090888.2-201ENST00000559765 1144 ntBASIC2.97□□□□□ -1.93
VPS54Q9P1Q0 AL157394.1-201ENST00000562983 1224 ntBASIC2.97□□□□□ -1.93
VPS54Q9P1Q0 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC2.97□□□□□ -1.93
VPS54Q9P1Q0 AC021171.1-201ENST00000603137 706 ntBASIC2.97□□□□□ -1.93
VPS54Q9P1Q0 AL357094.1-201ENST00000603845 844 ntBASIC2.97□□□□□ -1.93
VPS54Q9P1Q0 AC090132.2-201ENST00000615881 347 ntBASIC2.97□□□□□ -1.93
VPS54Q9P1Q0 AC021755.4-201ENST00000616620 456 ntBASIC2.97□□□□□ -1.93
VPS54Q9P1Q0 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
VPS54Q9P1Q0 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.97□□□□□ -1.93
VPS54Q9P1Q0 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.93
VPS54Q9P1Q0 ZNF736P9Y-201ENST00000439586 1345 ntBASIC2.96□□□□□ -1.93
VPS54Q9P1Q0 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC2.96□□□□□ -1.94
VPS54Q9P1Q0 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.96□□□□□ -1.94
VPS54Q9P1Q0 AL391994.1-201ENST00000254724 282 ntBASIC2.96□□□□□ -1.94
VPS54Q9P1Q0 SNORA36C-201ENST00000384289 132 ntBASIC2.96□□□□□ -1.94
VPS54Q9P1Q0 RN7SKP266-201ENST00000410232 287 ntBASIC2.96□□□□□ -1.94
VPS54Q9P1Q0 RNU6-516P-201ENST00000411381 104 ntBASIC2.96□□□□□ -1.94
VPS54Q9P1Q0 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC2.96□□□□□ -1.94
VPS54Q9P1Q0 AC010099.3-201ENST00000423896 409 ntBASIC2.96□□□□□ -1.94
VPS54Q9P1Q0 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC2.96□□□□□ -1.94
VPS54Q9P1Q0 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC2.96□□□□□ -1.94
VPS54Q9P1Q0 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
VPS54Q9P1Q0 SNRPGP6-201ENST00000451124 220 ntBASIC2.96□□□□□ -1.94
VPS54Q9P1Q0 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC2.96□□□□□ -1.94
VPS54Q9P1Q0 RN7SL499P-201ENST00000481141 276 ntBASIC2.96□□□□□ -1.94
VPS54Q9P1Q0 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC2.96□□□□□ -1.94
VPS54Q9P1Q0 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC2.96□□□□□ -1.94
VPS54Q9P1Q0 RNU1-103P-201ENST00000516502 125 ntBASIC2.96□□□□□ -1.94
VPS54Q9P1Q0 RN7SKP287-201ENST00000516546 266 ntBASIC2.96□□□□□ -1.94
VPS54Q9P1Q0 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC2.96□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 128.7 ms