Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 AC107934.1-201ENST00000522215 217 ntBASIC3.18□□□□□ -1.9
SIX2Q9NPC8 SMILR-201ENST00000533992 553 ntTSL 4 BASIC3.18□□□□□ -1.9
SIX2Q9NPC8 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC3.18□□□□□ -1.9
SIX2Q9NPC8 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC3.18□□□□□ -1.9
SIX2Q9NPC8 MIR3118-1-201ENST00000581787 76 ntBASIC3.18□□□□□ -1.9
SIX2Q9NPC8 NRBF2P1-201ENST00000587407 859 ntBASIC3.18□□□□□ -1.9
SIX2Q9NPC8 AP003465.2-201ENST00000602571 373 ntBASIC3.18□□□□□ -1.9
SIX2Q9NPC8 AC068790.3-201ENST00000602988 553 ntBASIC3.18□□□□□ -1.9
SIX2Q9NPC8 AL031176.1-201ENST00000604554 466 ntBASIC3.18□□□□□ -1.9
SIX2Q9NPC8 AC072046.2-201ENST00000618366 268 ntBASIC3.18□□□□□ -1.9
SIX2Q9NPC8 AC027514.1-201ENST00000588561 1603 ntBASIC3.18□□□□□ -1.9
SIX2Q9NPC8 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
SIX2Q9NPC8 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC3.18□□□□□ -1.9
SIX2Q9NPC8 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.18□□□□□ -1.9
SIX2Q9NPC8 AL136964.1-201ENST00000622038 2990 ntBASIC3.18□□□□□ -1.9
SIX2Q9NPC8 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
SIX2Q9NPC8 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
SIX2Q9NPC8 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.17□□□□□ -1.9
SIX2Q9NPC8 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC3.17□□□□□ -1.9
SIX2Q9NPC8 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC3.17□□□□□ -1.9
SIX2Q9NPC8 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.17□□□□□ -1.9
SIX2Q9NPC8 Y_RNA.6-201ENST00000362350 114 ntBASIC3.17□□□□□ -1.9
SIX2Q9NPC8 U3.15-201ENST00000365398 212 ntBASIC3.17□□□□□ -1.9
SIX2Q9NPC8 RNU6-195P-201ENST00000411352 109 ntBASIC3.17□□□□□ -1.9
SIX2Q9NPC8 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC3.17□□□□□ -1.9
SIX2Q9NPC8 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
SIX2Q9NPC8 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC3.17□□□□□ -1.9
SIX2Q9NPC8 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC3.17□□□□□ -1.9
SIX2Q9NPC8 USP9YP36-201ENST00000424581 829 ntBASIC3.17□□□□□ -1.9
SIX2Q9NPC8 MTCO3P30-201ENST00000426425 670 ntBASIC3.17□□□□□ -1.9
SIX2Q9NPC8 ISCA1P6-201ENST00000427740 390 ntBASIC3.17□□□□□ -1.9
SIX2Q9NPC8 C8orf59P1-201ENST00000429930 303 ntBASIC3.17□□□□□ -1.9
SIX2Q9NPC8 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC3.17□□□□□ -1.9
SIX2Q9NPC8 MTND1P4-201ENST00000435196 415 ntBASIC3.17□□□□□ -1.9
SIX2Q9NPC8 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC3.17□□□□□ -1.9
SIX2Q9NPC8 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC3.17□□□□□ -1.9
SIX2Q9NPC8 AL162389.1-201ENST00000449233 177 ntBASIC3.17□□□□□ -1.9
SIX2Q9NPC8 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC3.17□□□□□ -1.9
SIX2Q9NPC8 RPS29P2-201ENST00000479278 136 ntBASIC3.17□□□□□ -1.9
SIX2Q9NPC8 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC3.17□□□□□ -1.9
SIX2Q9NPC8 RPL32P34-201ENST00000486380 400 ntBASIC3.17□□□□□ -1.9
SIX2Q9NPC8 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC3.17□□□□□ -1.9
SIX2Q9NPC8 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC3.17□□□□□ -1.9
SIX2Q9NPC8 RNU6-1095P-201ENST00000516148 108 ntBASIC3.17□□□□□ -1.9
SIX2Q9NPC8 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC3.17□□□□□ -1.9
SIX2Q9NPC8 PSMA2P1-201ENST00000526365 646 ntBASIC3.17□□□□□ -1.9
SIX2Q9NPC8 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC3.17□□□□□ -1.9
SIX2Q9NPC8 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC3.17□□□□□ -1.9
SIX2Q9NPC8 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC3.17□□□□□ -1.9
SIX2Q9NPC8 AC126177.3-201ENST00000551839 688 ntBASIC3.17□□□□□ -1.9
SIX2Q9NPC8 AC055876.1-202ENST00000567053 138 ntBASIC3.17□□□□□ -1.9
SIX2Q9NPC8 AC090616.5-202ENST00000582111 297 ntBASIC3.17□□□□□ -1.9
SIX2Q9NPC8 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC3.17□□□□□ -1.9
SIX2Q9NPC8 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC3.17□□□□□ -1.9
SIX2Q9NPC8 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.17□□□□□ -1.9
SIX2Q9NPC8 AC136475.10-201ENST00000620253 385 ntBASIC3.17□□□□□ -1.9
SIX2Q9NPC8 AC112204.3-201ENST00000623822 332 ntBASIC3.17□□□□□ -1.9
SIX2Q9NPC8 AC091953.2-201ENST00000623979 160 ntBASIC3.17□□□□□ -1.9
SIX2Q9NPC8 AL159972.1-201ENST00000625150 448 ntBASIC3.17□□□□□ -1.9
SIX2Q9NPC8 OR5AK4P-201ENST00000635912 903 ntBASIC3.17□□□□□ -1.9
SIX2Q9NPC8 AL353746.1-201ENST00000566293 6881 ntBASIC3.17□□□□□ -1.9
SIX2Q9NPC8 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC3.17□□□□□ -1.9
SIX2Q9NPC8 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
SIX2Q9NPC8 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
SIX2Q9NPC8 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC3.16□□□□□ -1.9
SIX2Q9NPC8 AL138713.1-201ENST00000624026 2130 ntBASIC3.16□□□□□ -1.9
SIX2Q9NPC8 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.16□□□□□ -1.9
SIX2Q9NPC8 RNU4-1-201ENST00000363925 141 ntBASIC3.16□□□□□ -1.9
SIX2Q9NPC8 RNU6-1078P-201ENST00000364522 103 ntBASIC3.16□□□□□ -1.9
SIX2Q9NPC8 MIR19A-201ENST00000384878 82 ntBASIC3.16□□□□□ -1.9
SIX2Q9NPC8 RPL23AP32-201ENST00000395315 459 ntBASIC3.16□□□□□ -1.9
SIX2Q9NPC8 MRPL42P2-201ENST00000403169 426 ntBASIC3.16□□□□□ -1.9
SIX2Q9NPC8 RNU2-8P-201ENST00000410727 190 ntBASIC3.16□□□□□ -1.9
SIX2Q9NPC8 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC3.16□□□□□ -1.9
SIX2Q9NPC8 UBE2V1P10-201ENST00000414685 269 ntBASIC3.16□□□□□ -1.9
SIX2Q9NPC8 AL451074.5-201ENST00000415894 435 ntBASIC3.16□□□□□ -1.9
SIX2Q9NPC8 BX295541.1-201ENST00000417774 250 ntBASIC3.16□□□□□ -1.9
SIX2Q9NPC8 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC3.16□□□□□ -1.9
SIX2Q9NPC8 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC3.16□□□□□ -1.9
SIX2Q9NPC8 OR2B8P-201ENST00000432841 938 ntBASIC3.16□□□□□ -1.9
SIX2Q9NPC8 AC093156.1-201ENST00000440382 670 ntBASIC3.16□□□□□ -1.9
SIX2Q9NPC8 RAC1P7-201ENST00000445367 377 ntBASIC3.16□□□□□ -1.9
SIX2Q9NPC8 MTND1P1-201ENST00000445453 368 ntBASIC3.16□□□□□ -1.9
SIX2Q9NPC8 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC3.16□□□□□ -1.9
SIX2Q9NPC8 TPT1P14-201ENST00000448018 505 ntBASIC3.16□□□□□ -1.9
SIX2Q9NPC8 AL157359.1-201ENST00000449840 424 ntTSL 3 BASIC3.16□□□□□ -1.9
SIX2Q9NPC8 OFD1P4Y-201ENST00000455273 1179 ntBASIC3.16□□□□□ -1.9
SIX2Q9NPC8 AP000926.1-201ENST00000479573 241 ntBASIC3.16□□□□□ -1.9
SIX2Q9NPC8 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC3.16□□□□□ -1.9
SIX2Q9NPC8 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
SIX2Q9NPC8 AC107401.1-201ENST00000503426 685 ntBASIC3.16□□□□□ -1.9
SIX2Q9NPC8 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC3.16□□□□□ -1.9
SIX2Q9NPC8 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC3.16□□□□□ -1.9
SIX2Q9NPC8 AC093331.1-201ENST00000521474 169 ntBASIC3.16□□□□□ -1.9
SIX2Q9NPC8 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC3.16□□□□□ -1.9
SIX2Q9NPC8 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC3.16□□□□□ -1.9
SIX2Q9NPC8 MIR3146-201ENST00000580367 79 ntBASIC3.16□□□□□ -1.9
SIX2Q9NPC8 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC3.16□□□□□ -1.9
SIX2Q9NPC8 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC3.16□□□□□ -1.9
SIX2Q9NPC8 AC012493.2-201ENST00000595083 291 ntBASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 90.1 ms