Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 RNU4-89P-201ENST00000607443 133 ntBASIC4.37□□□□□ -1.71
TRIM39Q9HCM9 uc_338.13-201ENST00000618243 179 ntBASIC4.37□□□□□ -1.71
TRIM39Q9HCM9 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC4.37□□□□□ -1.71
TRIM39Q9HCM9 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC4.36□□□□□ -1.71
TRIM39Q9HCM9 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC4.36□□□□□ -1.71
TRIM39Q9HCM9 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC4.36□□□□□ -1.71
TRIM39Q9HCM9 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC4.36□□□□□ -1.71
TRIM39Q9HCM9 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC4.36□□□□□ -1.71
TRIM39Q9HCM9 RNA5SP307-201ENST00000362863 116 ntBASIC4.36□□□□□ -1.71
TRIM39Q9HCM9 MIR301A-201ENST00000385261 86 ntBASIC4.36□□□□□ -1.71
TRIM39Q9HCM9 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC4.36□□□□□ -1.71
TRIM39Q9HCM9 BTF3L4P3-201ENST00000418879 476 ntBASIC4.36□□□□□ -1.71
TRIM39Q9HCM9 NDUFB4P7-201ENST00000423198 363 ntBASIC4.36□□□□□ -1.71
TRIM39Q9HCM9 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC4.36□□□□□ -1.71
TRIM39Q9HCM9 AL132765.1-201ENST00000434165 553 ntBASIC4.36□□□□□ -1.71
TRIM39Q9HCM9 AC236972.2-201ENST00000434979 310 ntBASIC4.36□□□□□ -1.71
TRIM39Q9HCM9 RNU7-66P-201ENST00000459469 62 ntBASIC4.36□□□□□ -1.71
TRIM39Q9HCM9 DYNLL1P5-201ENST00000467158 270 ntBASIC4.36□□□□□ -1.71
TRIM39Q9HCM9 OARD1-209ENST00000471367 401 ntTSL 2 BASIC4.36□□□□□ -1.71
TRIM39Q9HCM9 AC025445.1-201ENST00000502728 300 ntBASIC4.36□□□□□ -1.71
TRIM39Q9HCM9 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC4.36□□□□□ -1.71
TRIM39Q9HCM9 VWA8P1-201ENST00000510889 176 ntBASIC4.36□□□□□ -1.71
TRIM39Q9HCM9 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC4.36□□□□□ -1.71
TRIM39Q9HCM9 RPL39P5-202ENST00000512505 151 ntBASIC4.36□□□□□ -1.71
TRIM39Q9HCM9 APOOP4-201ENST00000513530 597 ntBASIC4.36□□□□□ -1.71
TRIM39Q9HCM9 MAL2-206ENST00000522187 547 ntTSL 4 BASIC4.36□□□□□ -1.71
TRIM39Q9HCM9 AP001804.3-201ENST00000525146 880 ntBASIC4.36□□□□□ -1.71
TRIM39Q9HCM9 AP004242.1-201ENST00000533701 349 ntBASIC4.36□□□□□ -1.71
TRIM39Q9HCM9 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC4.36□□□□□ -1.71
TRIM39Q9HCM9 AC093027.1-201ENST00000546698 429 ntBASIC4.36□□□□□ -1.71
TRIM39Q9HCM9 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC4.36□□□□□ -1.71
TRIM39Q9HCM9 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
TRIM39Q9HCM9 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC4.36□□□□□ -1.71
TRIM39Q9HCM9 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC4.36□□□□□ -1.71
TRIM39Q9HCM9 AC044792.1-201ENST00000593294 196 ntBASIC4.36□□□□□ -1.71
TRIM39Q9HCM9 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC4.36□□□□□ -1.71
TRIM39Q9HCM9 AC113139.1-201ENST00000605049 239 ntBASIC4.36□□□□□ -1.71
TRIM39Q9HCM9 AC140113.4-201ENST00000622087 222 ntBASIC4.36□□□□□ -1.71
TRIM39Q9HCM9 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
TRIM39Q9HCM9 VPS8-228ENST00000628962 207 ntTSL 5 BASIC4.36□□□□□ -1.71
TRIM39Q9HCM9 AC006026.1-201ENST00000444025 1803 ntBASIC4.36□□□□□ -1.71
TRIM39Q9HCM9 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC4.36□□□□□ -1.71
TRIM39Q9HCM9 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC4.36□□□□□ -1.71
TRIM39Q9HCM9 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
TRIM39Q9HCM9 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC4.36□□□□□ -1.71
TRIM39Q9HCM9 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.36□□□□□ -1.71
TRIM39Q9HCM9 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC4.36□□□□□ -1.71
TRIM39Q9HCM9 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC4.35□□□□□ -1.71
TRIM39Q9HCM9 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC4.35□□□□□ -1.71
TRIM39Q9HCM9 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC4.35□□□□□ -1.71
TRIM39Q9HCM9 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC4.35□□□□□ -1.71
TRIM39Q9HCM9 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
TRIM39Q9HCM9 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC4.35□□□□□ -1.71
TRIM39Q9HCM9 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
TRIM39Q9HCM9 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC4.35□□□□□ -1.71
TRIM39Q9HCM9 MIR331-201ENST00000362302 94 ntBASIC4.35□□□□□ -1.71
TRIM39Q9HCM9 Y_RNA.167-201ENST00000363735 109 ntBASIC4.35□□□□□ -1.71
TRIM39Q9HCM9 RNA5SP509-201ENST00000364577 119 ntBASIC4.35□□□□□ -1.71
TRIM39Q9HCM9 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
TRIM39Q9HCM9 SNORA16.2-201ENST00000390991 127 ntBASIC4.35□□□□□ -1.71
TRIM39Q9HCM9 FAT1P1-201ENST00000406588 507 ntBASIC4.35□□□□□ -1.71
TRIM39Q9HCM9 RPS20P14-201ENST00000412545 360 ntBASIC4.35□□□□□ -1.71
TRIM39Q9HCM9 RPLP0P7-201ENST00000416050 667 ntBASIC4.35□□□□□ -1.71
TRIM39Q9HCM9 AL139396.1-201ENST00000421137 167 ntBASIC4.35□□□□□ -1.71
TRIM39Q9HCM9 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC4.35□□□□□ -1.71
TRIM39Q9HCM9 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC4.35□□□□□ -1.71
TRIM39Q9HCM9 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC4.35□□□□□ -1.71
TRIM39Q9HCM9 GTF2IP13-201ENST00000438487 386 ntBASIC4.35□□□□□ -1.71
TRIM39Q9HCM9 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC4.35□□□□□ -1.71
TRIM39Q9HCM9 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC4.35□□□□□ -1.71
TRIM39Q9HCM9 RPL31P60-201ENST00000478450 367 ntBASIC4.35□□□□□ -1.71
TRIM39Q9HCM9 RPL21P93-201ENST00000480465 489 ntBASIC4.35□□□□□ -1.71
TRIM39Q9HCM9 RNU2-69P-201ENST00000516061 100 ntBASIC4.35□□□□□ -1.71
TRIM39Q9HCM9 RNU6-277P-201ENST00000516272 106 ntBASIC4.35□□□□□ -1.71
TRIM39Q9HCM9 RNU6-1256P-201ENST00000516539 103 ntBASIC4.35□□□□□ -1.71
TRIM39Q9HCM9 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC4.35□□□□□ -1.71
TRIM39Q9HCM9 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC4.35□□□□□ -1.71
TRIM39Q9HCM9 AC135001.1-201ENST00000544546 283 ntBASIC4.35□□□□□ -1.71
TRIM39Q9HCM9 ARL6IP1P1-201ENST00000545836 610 ntBASIC4.35□□□□□ -1.71
TRIM39Q9HCM9 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC4.35□□□□□ -1.71
TRIM39Q9HCM9 AC090115.3-201ENST00000553218 849 ntBASIC4.35□□□□□ -1.71
TRIM39Q9HCM9 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC4.35□□□□□ -1.71
TRIM39Q9HCM9 MTCO3P23-201ENST00000561363 289 ntBASIC4.35□□□□□ -1.71
TRIM39Q9HCM9 ATP5J2P6-201ENST00000565203 266 ntBASIC4.35□□□□□ -1.71
TRIM39Q9HCM9 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
TRIM39Q9HCM9 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC4.35□□□□□ -1.71
TRIM39Q9HCM9 AC113403.1-201ENST00000604910 193 ntBASIC4.35□□□□□ -1.71
TRIM39Q9HCM9 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC4.35□□□□□ -1.71
TRIM39Q9HCM9 AC091979.2-201ENST00000607514 214 ntBASIC4.35□□□□□ -1.71
TRIM39Q9HCM9 AC007546.1-201ENST00000619452 559 ntBASIC4.35□□□□□ -1.71
TRIM39Q9HCM9 AC022418.1-201ENST00000624118 445 ntBASIC4.35□□□□□ -1.71
TRIM39Q9HCM9 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC4.35□□□□□ -1.71
TRIM39Q9HCM9 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
TRIM39Q9HCM9 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
TRIM39Q9HCM9 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC4.35□□□□□ -1.71
TRIM39Q9HCM9 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.35□□□□□ -1.71
TRIM39Q9HCM9 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC4.34□□□□□ -1.71
TRIM39Q9HCM9 AC015813.6-201ENST00000624409 5808 ntBASIC4.34□□□□□ -1.71
TRIM39Q9HCM9 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
TRIM39Q9HCM9 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms