Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 AP003399.1-201ENST00000637534 361 ntBASIC3.09□□□□□ -1.91
CCDC43Q96MW1 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC3.09□□□□□ -1.91
CCDC43Q96MW1 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.09□□□□□ -1.92
CCDC43Q96MW1 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC3.09□□□□□ -1.92
CCDC43Q96MW1 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC3.09□□□□□ -1.92
CCDC43Q96MW1 PCF11-AS1-201ENST00000602322 1516 ntBASIC3.09□□□□□ -1.92
CCDC43Q96MW1 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
CCDC43Q96MW1 SNORA80A-201ENST00000363922 136 ntBASIC3.08□□□□□ -1.92
CCDC43Q96MW1 RN7SKP266-201ENST00000410232 287 ntBASIC3.08□□□□□ -1.92
CCDC43Q96MW1 RNU2-33P-201ENST00000410344 192 ntBASIC3.08□□□□□ -1.92
CCDC43Q96MW1 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC3.08□□□□□ -1.92
CCDC43Q96MW1 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC3.08□□□□□ -1.92
CCDC43Q96MW1 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC3.08□□□□□ -1.92
CCDC43Q96MW1 GSTA11P-201ENST00000452866 669 ntBASIC3.08□□□□□ -1.92
CCDC43Q96MW1 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC3.08□□□□□ -1.92
CCDC43Q96MW1 AC087588.1-201ENST00000462203 316 ntBASIC3.08□□□□□ -1.92
CCDC43Q96MW1 AC003982.1-202ENST00000469928 248 ntBASIC3.08□□□□□ -1.92
CCDC43Q96MW1 RPS20P22-201ENST00000473700 357 ntBASIC3.08□□□□□ -1.92
CCDC43Q96MW1 SUMO2P6-201ENST00000505273 288 ntBASIC3.08□□□□□ -1.92
CCDC43Q96MW1 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC3.08□□□□□ -1.92
CCDC43Q96MW1 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC3.08□□□□□ -1.92
CCDC43Q96MW1 MEPE-206ENST00000511670 550 ntTSL 4 BASIC3.08□□□□□ -1.92
CCDC43Q96MW1 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC3.08□□□□□ -1.92
CCDC43Q96MW1 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC3.08□□□□□ -1.92
CCDC43Q96MW1 OR5BM1P-201ENST00000512021 366 ntBASIC3.08□□□□□ -1.92
CCDC43Q96MW1 RNU6-390P-201ENST00000516259 103 ntBASIC3.08□□□□□ -1.92
CCDC43Q96MW1 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC3.08□□□□□ -1.92
CCDC43Q96MW1 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC3.08□□□□□ -1.92
CCDC43Q96MW1 AL391261.3-201ENST00000557194 520 ntBASIC3.08□□□□□ -1.92
CCDC43Q96MW1 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC3.08□□□□□ -1.92
CCDC43Q96MW1 CASC16-202ENST00000563844 610 ntTSL 3 BASIC3.08□□□□□ -1.92
CCDC43Q96MW1 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC3.08□□□□□ -1.92
CCDC43Q96MW1 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC3.08□□□□□ -1.92
CCDC43Q96MW1 HMGN2P15-201ENST00000585707 270 ntBASIC3.08□□□□□ -1.92
CCDC43Q96MW1 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC3.08□□□□□ -1.92
CCDC43Q96MW1 MTND4LP5-201ENST00000605152 292 ntBASIC3.08□□□□□ -1.92
CCDC43Q96MW1 AL627309.6-201ENST00000606857 840 ntBASIC3.08□□□□□ -1.92
CCDC43Q96MW1 AL136370.1-201ENST00000608166 691 ntBASIC3.08□□□□□ -1.92
CCDC43Q96MW1 AL356596.1-201ENST00000624230 379 ntBASIC3.08□□□□□ -1.92
CCDC43Q96MW1 SCARNA15.3-201ENST00000626315 122 ntBASIC3.08□□□□□ -1.92
CCDC43Q96MW1 SCARNA4.1-201ENST00000628597 123 ntBASIC3.08□□□□□ -1.92
CCDC43Q96MW1 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC3.08□□□□□ -1.92
CCDC43Q96MW1 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
CCDC43Q96MW1 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC3.08□□□□□ -1.92
CCDC43Q96MW1 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.08□□□□□ -1.92
CCDC43Q96MW1 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC3.08□□□□□ -1.92
CCDC43Q96MW1 AC022336.2-201ENST00000568966 2538 ntBASIC3.08□□□□□ -1.92
CCDC43Q96MW1 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
CCDC43Q96MW1 OR5J1P-201ENST00000313544 939 ntBASIC3.07□□□□□ -1.92
CCDC43Q96MW1 RNU6-1180P-201ENST00000364935 107 ntBASIC3.07□□□□□ -1.92
CCDC43Q96MW1 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC3.07□□□□□ -1.92
CCDC43Q96MW1 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
CCDC43Q96MW1 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC3.07□□□□□ -1.92
CCDC43Q96MW1 AL139281.1-201ENST00000422120 335 ntBASIC3.07□□□□□ -1.92
CCDC43Q96MW1 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC3.07□□□□□ -1.92
CCDC43Q96MW1 AL445669.1-201ENST00000426743 755 ntBASIC3.07□□□□□ -1.92
CCDC43Q96MW1 GTF2IP20-201ENST00000431663 360 ntBASIC3.07□□□□□ -1.92
CCDC43Q96MW1 AC109583.1-201ENST00000432156 268 ntBASIC3.07□□□□□ -1.92
CCDC43Q96MW1 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC3.07□□□□□ -1.92
CCDC43Q96MW1 RSU1P2-202ENST00000437884 485 ntBASIC3.07□□□□□ -1.92
CCDC43Q96MW1 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC3.07□□□□□ -1.92
CCDC43Q96MW1 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
CCDC43Q96MW1 MTCO3P45-201ENST00000443036 613 ntBASIC3.07□□□□□ -1.92
CCDC43Q96MW1 RPL12P25-201ENST00000455592 494 ntBASIC3.07□□□□□ -1.92
CCDC43Q96MW1 AP001486.1-201ENST00000463339 476 ntBASIC3.07□□□□□ -1.92
CCDC43Q96MW1 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC3.07□□□□□ -1.92
CCDC43Q96MW1 RPL23AP11-201ENST00000475260 469 ntBASIC3.07□□□□□ -1.92
CCDC43Q96MW1 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
CCDC43Q96MW1 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC3.07□□□□□ -1.92
CCDC43Q96MW1 RNU1-103P-201ENST00000516502 125 ntBASIC3.07□□□□□ -1.92
CCDC43Q96MW1 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC3.07□□□□□ -1.92
CCDC43Q96MW1 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC3.07□□□□□ -1.92
CCDC43Q96MW1 UBTFL10-201ENST00000528532 562 ntBASIC3.07□□□□□ -1.92
CCDC43Q96MW1 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC3.07□□□□□ -1.92
CCDC43Q96MW1 AC128657.1-201ENST00000549459 145 ntBASIC3.07□□□□□ -1.92
CCDC43Q96MW1 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC3.07□□□□□ -1.92
CCDC43Q96MW1 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC3.07□□□□□ -1.92
CCDC43Q96MW1 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC3.07□□□□□ -1.92
CCDC43Q96MW1 MTND1P8-201ENST00000571424 950 ntBASIC3.07□□□□□ -1.92
CCDC43Q96MW1 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC3.07□□□□□ -1.92
CCDC43Q96MW1 MIR3605-201ENST00000583214 100 ntBASIC3.07□□□□□ -1.92
CCDC43Q96MW1 AF131215.7-201ENST00000602443 707 ntBASIC3.07□□□□□ -1.92
CCDC43Q96MW1 AC136601.2-201ENST00000604356 474 ntBASIC3.07□□□□□ -1.92
CCDC43Q96MW1 AC097468.3-201ENST00000607956 456 ntBASIC3.07□□□□□ -1.92
CCDC43Q96MW1 FTX_3.1-201ENST00000610451 147 ntBASIC3.07□□□□□ -1.92
CCDC43Q96MW1 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC3.07□□□□□ -1.92
CCDC43Q96MW1 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC3.07□□□□□ -1.92
CCDC43Q96MW1 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC3.07□□□□□ -1.92
CCDC43Q96MW1 ZNF519P1-201ENST00000449011 1626 ntBASIC3.07□□□□□ -1.92
CCDC43Q96MW1 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC3.07□□□□□ -1.92
CCDC43Q96MW1 Z82195.2-201ENST00000612348 18351 ntBASIC3.07□□□□□ -1.92
CCDC43Q96MW1 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC3.06□□□□□ -1.92
CCDC43Q96MW1 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.06□□□□□ -1.92
CCDC43Q96MW1 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
CCDC43Q96MW1 RNU6-723P-201ENST00000383973 107 ntBASIC3.06□□□□□ -1.92
CCDC43Q96MW1 AL031121.1-201ENST00000406553 254 ntBASIC3.06□□□□□ -1.92
CCDC43Q96MW1 AL359704.1-201ENST00000411586 781 ntBASIC3.06□□□□□ -1.92
CCDC43Q96MW1 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC3.06□□□□□ -1.92
CCDC43Q96MW1 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC3.06□□□□□ -1.92
CCDC43Q96MW1 FAM103A2P-201ENST00000444122 354 ntBASIC3.06□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 124.9 ms