Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 HMGB1P36-201ENST00000487709 576 ntBASIC0.74□□□□□ -2.29
LINC00643Q86TS7 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC0.74□□□□□ -2.29
LINC00643Q86TS7 CFL2-206ENST00000556161 546 ntTSL 4 BASIC0.74□□□□□ -2.29
LINC00643Q86TS7 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC0.74□□□□□ -2.29
LINC00643Q86TS7 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC0.74□□□□□ -2.29
LINC00643Q86TS7 MIR4255-201ENST00000579351 72 ntBASIC0.74□□□□□ -2.29
LINC00643Q86TS7 AC024941.1-201ENST00000612250 334 ntBASIC0.74□□□□□ -2.29
LINC00643Q86TS7 AC010678.1-201ENST00000614118 713 ntBASIC0.74□□□□□ -2.29
LINC00643Q86TS7 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC0.74□□□□□ -2.29
LINC00643Q86TS7 MIR8057-201ENST00000620957 69 ntBASIC0.74□□□□□ -2.29
LINC00643Q86TS7 AC092881.1-201ENST00000638218 2733 ntBASIC0.74□□□□□ -2.29
LINC00643Q86TS7 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC0.74□□□□□ -2.29
LINC00643Q86TS7 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC0.74□□□□□ -2.29
LINC00643Q86TS7 MTND5P9-201ENST00000503854 1755 ntBASIC0.73□□□□□ -2.29
LINC00643Q86TS7 SNORA25.8-201ENST00000364831 128 ntBASIC0.73□□□□□ -2.29
LINC00643Q86TS7 MIR518A2-201ENST00000384966 87 ntBASIC0.73□□□□□ -2.29
LINC00643Q86TS7 MIR513A1-201ENST00000385138 129 ntBASIC0.73□□□□□ -2.29
LINC00643Q86TS7 SSXP10-201ENST00000402595 565 ntBASIC0.73□□□□□ -2.29
LINC00643Q86TS7 TXNP7-201ENST00000406296 293 ntBASIC0.73□□□□□ -2.29
LINC00643Q86TS7 MIR1323-201ENST00000408090 73 ntBASIC0.73□□□□□ -2.29
LINC00643Q86TS7 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC0.73□□□□□ -2.29
LINC00643Q86TS7 NUP35P1-201ENST00000422734 947 ntBASIC0.73□□□□□ -2.29
LINC00643Q86TS7 AC092634.2-201ENST00000428146 1010 ntBASIC0.73□□□□□ -2.29
LINC00643Q86TS7 RPL36P19-201ENST00000430744 301 ntBASIC0.73□□□□□ -2.29
LINC00643Q86TS7 AC010723.1-201ENST00000435111 540 ntTSL 3 BASIC0.73□□□□□ -2.29
LINC00643Q86TS7 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC0.73□□□□□ -2.29
LINC00643Q86TS7 CYCSP32-201ENST00000440548 321 ntBASIC0.73□□□□□ -2.29
LINC00643Q86TS7 BUD31P2-201ENST00000449374 300 ntBASIC0.73□□□□□ -2.29
LINC00643Q86TS7 AC117503.1-201ENST00000472241 394 ntBASIC0.73□□□□□ -2.29
LINC00643Q86TS7 AL358832.1-201ENST00000497800 389 ntBASIC0.73□□□□□ -2.29
LINC00643Q86TS7 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC0.73□□□□□ -2.29
LINC00643Q86TS7 LINC01495-201ENST00000532380 421 ntTSL 2 BASIC0.73□□□□□ -2.29
LINC00643Q86TS7 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC0.73□□□□□ -2.29
LINC00643Q86TS7 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC0.73□□□□□ -2.29
LINC00643Q86TS7 AC110588.1-201ENST00000559699 137 ntBASIC0.73□□□□□ -2.29
LINC00643Q86TS7 MIR4319-201ENST00000577285 85 ntBASIC0.73□□□□□ -2.29
LINC00643Q86TS7 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC0.73□□□□□ -2.29
LINC00643Q86TS7 DNAJC19P3-201ENST00000594491 331 ntBASIC0.73□□□□□ -2.29
LINC00643Q86TS7 AL353811.1-201ENST00000602851 736 ntTSL 5 BASIC0.73□□□□□ -2.29
LINC00643Q86TS7 AL670379.6-201ENST00000603753 252 ntBASIC0.73□□□□□ -2.29
LINC00643Q86TS7 AL670379.11-201ENST00000604059 253 ntBASIC0.73□□□□□ -2.29
LINC00643Q86TS7 AL670379.10-201ENST00000604330 253 ntBASIC0.73□□□□□ -2.29
LINC00643Q86TS7 AC008162.1-201ENST00000604718 254 ntBASIC0.73□□□□□ -2.29
LINC00643Q86TS7 AL670379.1-201ENST00000604752 252 ntBASIC0.73□□□□□ -2.29
LINC00643Q86TS7 AL670379.2-201ENST00000604983 252 ntBASIC0.73□□□□□ -2.29
LINC00643Q86TS7 AL670379.5-201ENST00000605253 252 ntBASIC0.73□□□□□ -2.29
LINC00643Q86TS7 AL670379.4-201ENST00000605279 254 ntBASIC0.73□□□□□ -2.29
LINC00643Q86TS7 AL670379.12-201ENST00000605291 253 ntBASIC0.73□□□□□ -2.29
LINC00643Q86TS7 AL670379.8-201ENST00000605353 252 ntBASIC0.73□□□□□ -2.29
LINC00643Q86TS7 AL670379.9-201ENST00000605428 253 ntBASIC0.73□□□□□ -2.29
LINC00643Q86TS7 AL670379.7-201ENST00000605823 252 ntBASIC0.73□□□□□ -2.29
LINC00643Q86TS7 AC103710.2-201ENST00000609912 942 ntBASIC0.73□□□□□ -2.29
LINC00643Q86TS7 AL138478.1-201ENST00000612252 832 ntBASIC0.73□□□□□ -2.29
LINC00643Q86TS7 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC0.73□□□□□ -2.29
LINC00643Q86TS7 OR5H6-203ENST00000642105 978 ntBASIC0.73□□□□□ -2.29
LINC00643Q86TS7 RNU6-1187P-201ENST00000364771 110 ntBASIC0.72□□□□□ -2.29
LINC00643Q86TS7 RNU4-53P-201ENST00000410828 140 ntBASIC0.72□□□□□ -2.29
LINC00643Q86TS7 RPL37P10-201ENST00000412884 288 ntBASIC0.72□□□□□ -2.29
LINC00643Q86TS7 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC0.72□□□□□ -2.29
LINC00643Q86TS7 AC004975.1-201ENST00000428733 208 ntBASIC0.72□□□□□ -2.29
LINC00643Q86TS7 Z98742.2-201ENST00000431564 187 ntBASIC0.72□□□□□ -2.29
LINC00643Q86TS7 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC0.72□□□□□ -2.29
LINC00643Q86TS7 AL109933.2-201ENST00000452651 260 ntBASIC0.72□□□□□ -2.29
LINC00643Q86TS7 SSXP1-201ENST00000453640 473 ntBASIC0.72□□□□□ -2.29
LINC00643Q86TS7 AL356272.1-201ENST00000454538 832 ntTSL 2 BASIC0.72□□□□□ -2.29
LINC00643Q86TS7 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC0.72□□□□□ -2.29
LINC00643Q86TS7 AL133372.1-201ENST00000493565 745 ntBASIC0.72□□□□□ -2.29
LINC00643Q86TS7 RNU6-250P-201ENST00000516958 103 ntBASIC0.72□□□□□ -2.29
LINC00643Q86TS7 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC0.72□□□□□ -2.29
LINC00643Q86TS7 AC034114.1-201ENST00000520293 285 ntBASIC0.72□□□□□ -2.29
LINC00643Q86TS7 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC0.72□□□□□ -2.29
LINC00643Q86TS7 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC0.72□□□□□ -2.29
LINC00643Q86TS7 AC087465.1-201ENST00000560574 245 ntBASIC0.72□□□□□ -2.29
LINC00643Q86TS7 AC233702.2-202ENST00000562547 291 ntBASIC0.72□□□□□ -2.29
LINC00643Q86TS7 AC023825.1-201ENST00000566704 1030 ntBASIC0.72□□□□□ -2.29
LINC00643Q86TS7 AC012435.1-202ENST00000568772 240 ntBASIC0.72□□□□□ -2.29
LINC00643Q86TS7 AC090912.2-203ENST00000581177 477 ntTSL 3 BASIC0.72□□□□□ -2.29
LINC00643Q86TS7 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC0.72□□□□□ -2.29
LINC00643Q86TS7 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC0.72□□□□□ -2.29
LINC00643Q86TS7 HSPE1P19-201ENST00000603327 295 ntBASIC0.72□□□□□ -2.29
LINC00643Q86TS7 AC013244.1-201ENST00000604279 193 ntBASIC0.72□□□□□ -2.29
LINC00643Q86TS7 AC012443.1-201ENST00000605605 231 ntBASIC0.72□□□□□ -2.29
LINC00643Q86TS7 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC0.72□□□□□ -2.29
LINC00643Q86TS7 AL356863.1-201ENST00000623378 1080 ntBASIC0.72□□□□□ -2.29
LINC00643Q86TS7 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC0.72□□□□□ -2.29
LINC00643Q86TS7 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC0.71□□□□□ -2.3
LINC00643Q86TS7 RNU6-452P-201ENST00000384406 107 ntBASIC0.71□□□□□ -2.3
LINC00643Q86TS7 SNORA67.6-201ENST00000391093 99 ntBASIC0.71□□□□□ -2.3
LINC00643Q86TS7 RNU6-516P-201ENST00000411381 104 ntBASIC0.71□□□□□ -2.3
LINC00643Q86TS7 AC023141.4-201ENST00000412031 328 ntBASIC0.71□□□□□ -2.3
LINC00643Q86TS7 OR6C66P-201ENST00000414917 930 ntBASIC0.71□□□□□ -2.3
LINC00643Q86TS7 SPA17P1-201ENST00000416656 452 ntBASIC0.71□□□□□ -2.3
LINC00643Q86TS7 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC0.71□□□□□ -2.3
LINC00643Q86TS7 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC0.71□□□□□ -2.3
LINC00643Q86TS7 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC0.71□□□□□ -2.3
LINC00643Q86TS7 AL050321.1-201ENST00000432363 400 ntBASIC0.71□□□□□ -2.3
LINC00643Q86TS7 AC023128.1-201ENST00000432431 799 ntTSL 3 BASIC0.71□□□□□ -2.3
LINC00643Q86TS7 MTND2P29-201ENST00000438595 412 ntBASIC0.71□□□□□ -2.3
LINC00643Q86TS7 AC107083.1-201ENST00000439643 279 ntBASIC0.71□□□□□ -2.3
LINC00643Q86TS7 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC0.71□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 113.4 ms