Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 UBE2D3P2-201ENST00000424409 445 ntBASIC1.82□□□□□ -2.12
USP54Q70EL1 AL445669.1-201ENST00000426743 755 ntBASIC1.82□□□□□ -2.12
USP54Q70EL1 Z85994.2-201ENST00000434327 452 ntBASIC1.82□□□□□ -2.12
USP54Q70EL1 UBBP3-201ENST00000445497 241 ntBASIC1.82□□□□□ -2.12
USP54Q70EL1 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC1.82□□□□□ -2.12
USP54Q70EL1 AP002345.1-201ENST00000456493 928 ntBASIC1.82□□□□□ -2.12
USP54Q70EL1 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
USP54Q70EL1 AC092691.3-201ENST00000482766 510 ntTSL 3 BASIC1.82□□□□□ -2.12
USP54Q70EL1 AC034222.1-201ENST00000494052 532 ntBASIC1.82□□□□□ -2.12
USP54Q70EL1 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC1.82□□□□□ -2.12
USP54Q70EL1 AC006499.2-201ENST00000513470 337 ntBASIC1.82□□□□□ -2.12
USP54Q70EL1 RPPH1-2P-201ENST00000516688 293 ntBASIC1.82□□□□□ -2.12
USP54Q70EL1 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC1.82□□□□□ -2.12
USP54Q70EL1 AC087272.1-201ENST00000523624 533 ntBASIC1.82□□□□□ -2.12
USP54Q70EL1 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.82□□□□□ -2.12
USP54Q70EL1 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC1.82□□□□□ -2.12
USP54Q70EL1 AC023813.2-201ENST00000564321 469 ntBASIC1.82□□□□□ -2.12
USP54Q70EL1 AC110792.4-201ENST00000609843 298 ntBASIC1.82□□□□□ -2.12
USP54Q70EL1 AL161629.2-201ENST00000615347 275 ntBASIC1.82□□□□□ -2.12
USP54Q70EL1 OR5H6-202ENST00000641416 1032 ntAPPRIS P1 BASIC1.82□□□□□ -2.12
USP54Q70EL1 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
USP54Q70EL1 AC099654.7-201ENST00000635788 2127 ntBASIC1.81□□□□□ -2.12
USP54Q70EL1 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC1.81□□□□□ -2.12
USP54Q70EL1 MTATP6P31-201ENST00000406985 692 ntBASIC1.81□□□□□ -2.12
USP54Q70EL1 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC1.81□□□□□ -2.12
USP54Q70EL1 AL512661.1-201ENST00000434586 1253 ntBASIC1.81□□□□□ -2.12
USP54Q70EL1 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.81□□□□□ -2.12
USP54Q70EL1 AC007395.1-201ENST00000451333 677 ntBASIC1.81□□□□□ -2.12
USP54Q70EL1 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC1.81□□□□□ -2.12
USP54Q70EL1 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC1.81□□□□□ -2.12
USP54Q70EL1 COX6CP14-201ENST00000469580 174 ntBASIC1.81□□□□□ -2.12
USP54Q70EL1 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC1.81□□□□□ -2.12
USP54Q70EL1 MTCO1P47-201ENST00000523889 1271 ntBASIC1.81□□□□□ -2.12
USP54Q70EL1 AP001804.3-201ENST00000525146 880 ntBASIC1.81□□□□□ -2.12
USP54Q70EL1 AC025857.1-201ENST00000525252 377 ntBASIC1.81□□□□□ -2.12
USP54Q70EL1 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC1.81□□□□□ -2.12
USP54Q70EL1 NUTF2P8-201ENST00000604593 363 ntBASIC1.81□□□□□ -2.12
USP54Q70EL1 AC018755.4-201ENST00000619715 454 ntBASIC1.81□□□□□ -2.12
USP54Q70EL1 ZNF734P-201ENST00000419494 1534 ntBASIC1.81□□□□□ -2.12
USP54Q70EL1 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.81□□□□□ -2.12
USP54Q70EL1 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.81□□□□□ -2.12
USP54Q70EL1 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
USP54Q70EL1 RNU1-52P-201ENST00000384190 164 ntBASIC1.8□□□□□ -2.12
USP54Q70EL1 MIR627-201ENST00000384979 97 ntBASIC1.8□□□□□ -2.12
USP54Q70EL1 RNU4-78P-201ENST00000410940 126 ntBASIC1.8□□□□□ -2.12
USP54Q70EL1 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC1.8□□□□□ -2.12
USP54Q70EL1 RPL7P30-201ENST00000420888 709 ntBASIC1.8□□□□□ -2.12
USP54Q70EL1 FO393419.3-201ENST00000428741 282 ntBASIC1.8□□□□□ -2.12
USP54Q70EL1 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC1.8□□□□□ -2.12
USP54Q70EL1 AL034418.1-201ENST00000448675 860 ntBASIC1.8□□□□□ -2.12
USP54Q70EL1 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC1.8□□□□□ -2.12
USP54Q70EL1 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC1.8□□□□□ -2.12
USP54Q70EL1 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC1.8□□□□□ -2.12
USP54Q70EL1 AC087481.2-201ENST00000565492 330 ntBASIC1.8□□□□□ -2.12
USP54Q70EL1 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC1.8□□□□□ -2.12
USP54Q70EL1 XIAPP1-201ENST00000603162 600 ntBASIC1.8□□□□□ -2.12
USP54Q70EL1 BNIP3P7-201ENST00000605641 516 ntBASIC1.8□□□□□ -2.12
USP54Q70EL1 AC006329.2-201ENST00000611491 394 ntBASIC1.8□□□□□ -2.12
USP54Q70EL1 MIR6734-201ENST00000621166 68 ntBASIC1.8□□□□□ -2.12
USP54Q70EL1 MIR3199-2-201ENST00000636243 86 ntBASIC1.8□□□□□ -2.12
USP54Q70EL1 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC1.8□□□□□ -2.12
USP54Q70EL1 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.8□□□□□ -2.12
USP54Q70EL1 RNA5SP325-201ENST00000363756 130 ntBASIC1.8□□□□□ -2.12
USP54Q70EL1 RNU4-51P-201ENST00000364206 140 ntBASIC1.8□□□□□ -2.12
USP54Q70EL1 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC1.8□□□□□ -2.12
USP54Q70EL1 PRRC2CP1-201ENST00000404428 159 ntBASIC1.8□□□□□ -2.12
USP54Q70EL1 MIR1303-201ENST00000408625 86 ntBASIC1.8□□□□□ -2.12
USP54Q70EL1 RNU6-564P-201ENST00000410983 104 ntBASIC1.8□□□□□ -2.12
USP54Q70EL1 DPYD-AS2-201ENST00000422259 788 ntTSL 3 BASIC1.8□□□□□ -2.12
USP54Q70EL1 IFNA20P-201ENST00000436840 528 ntBASIC1.8□□□□□ -2.12
USP54Q70EL1 UBE2V1P13-201ENST00000436983 439 ntBASIC1.8□□□□□ -2.12
USP54Q70EL1 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC1.8□□□□□ -2.12
USP54Q70EL1 RNA5SP310-201ENST00000459084 116 ntBASIC1.8□□□□□ -2.12
USP54Q70EL1 OR5BM1P-201ENST00000512021 366 ntBASIC1.8□□□□□ -2.12
USP54Q70EL1 RNU6-1223P-201ENST00000517124 104 ntBASIC1.8□□□□□ -2.12
USP54Q70EL1 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC1.8□□□□□ -2.12
USP54Q70EL1 SNRPGP16-201ENST00000533275 226 ntBASIC1.8□□□□□ -2.12
USP54Q70EL1 AC066613.1-202ENST00000560727 630 ntTSL 5 BASIC1.8□□□□□ -2.12
USP54Q70EL1 AC023158.1-201ENST00000561632 1025 ntBASIC1.8□□□□□ -2.12
USP54Q70EL1 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.8□□□□□ -2.12
USP54Q70EL1 MTATP6P3-201ENST00000581686 676 ntBASIC1.8□□□□□ -2.12
USP54Q70EL1 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC1.8□□□□□ -2.12
USP54Q70EL1 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC1.8□□□□□ -2.12
USP54Q70EL1 AC110079.1-202ENST00000635213 138 ntBASIC1.8□□□□□ -2.12
USP54Q70EL1 CENPCP1-201ENST00000533085 2578 ntBASIC1.79□□□□□ -2.12
USP54Q70EL1 SGO1P2-201ENST00000429458 1589 ntBASIC1.79□□□□□ -2.12
USP54Q70EL1 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC1.79□□□□□ -2.12
USP54Q70EL1 SNORA40.6-201ENST00000391153 128 ntBASIC1.79□□□□□ -2.12
USP54Q70EL1 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC1.79□□□□□ -2.12
USP54Q70EL1 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC1.79□□□□□ -2.12
USP54Q70EL1 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC1.79□□□□□ -2.12
USP54Q70EL1 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC1.79□□□□□ -2.12
USP54Q70EL1 HMGN2P18-201ENST00000450680 270 ntBASIC1.79□□□□□ -2.12
USP54Q70EL1 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC1.79□□□□□ -2.12
USP54Q70EL1 PCNAP1-201ENST00000505363 709 ntBASIC1.79□□□□□ -2.12
USP54Q70EL1 RNU6-491P-201ENST00000516099 110 ntBASIC1.79□□□□□ -2.12
USP54Q70EL1 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC1.79□□□□□ -2.12
USP54Q70EL1 CASP1-212ENST00000531166 300 ntTSL 5 BASIC1.79□□□□□ -2.12
USP54Q70EL1 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC1.79□□□□□ -2.12
USP54Q70EL1 AC139103.1-201ENST00000534696 1030 ntBASIC1.79□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 86.1 ms