Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 SDR42E1P2-201ENST00000614861 481 ntBASIC3.83□□□□□ -1.8
PTCHD3Q3KNS1 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC3.83□□□□□ -1.8
PTCHD3Q3KNS1 AL360181.4-201ENST00000621752 134 ntBASIC3.83□□□□□ -1.8
PTCHD3Q3KNS1 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC3.83□□□□□ -1.8
PTCHD3Q3KNS1 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
PTCHD3Q3KNS1 RIOK3P1-201ENST00000418778 1528 ntBASIC3.83□□□□□ -1.8
PTCHD3Q3KNS1 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
PTCHD3Q3KNS1 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC3.83□□□□□ -1.8
PTCHD3Q3KNS1 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
PTCHD3Q3KNS1 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC3.83□□□□□ -1.8
PTCHD3Q3KNS1 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC3.83□□□□□ -1.8
PTCHD3Q3KNS1 SDAD1P2-201ENST00000441308 2028 ntBASIC3.83□□□□□ -1.8
PTCHD3Q3KNS1 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC3.83□□□□□ -1.8
PTCHD3Q3KNS1 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 UBE3AP2-201ENST00000429033 2259 ntBASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 CBX3P1-201ENST00000325243 554 ntBASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 Y_RNA.160-201ENST00000363677 92 ntBASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 RNU6-188P-201ENST00000364207 107 ntBASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 Y_RNA.279-201ENST00000364763 95 ntBASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 RNU6-61P-201ENST00000365528 109 ntBASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 MIR23B-201ENST00000384832 97 ntBASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 RNU6-903P-201ENST00000391270 109 ntBASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 AC114491.1-201ENST00000416095 246 ntBASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 SRIP2-201ENST00000428470 166 ntBASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 AC098614.3-201ENST00000438957 440 ntBASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 RANP8-201ENST00000444720 713 ntBASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 SNRPGP5-201ENST00000456003 220 ntBASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 AC010285.1-201ENST00000470580 392 ntBASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 RPL23AP11-201ENST00000475260 469 ntBASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 RPL39P36-201ENST00000490784 156 ntBASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 AC091885.1-201ENST00000506658 268 ntBASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 AC087369.1-201ENST00000520775 996 ntBASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 AC008489.1-201ENST00000524271 483 ntBASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 OR5AL2P-201ENST00000532185 920 ntBASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 YPEL5P3-201ENST00000547227 352 ntBASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 AC074050.1-201ENST00000563247 211 ntBASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 UBE2V2P2-201ENST00000587677 504 ntBASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 AP001029.3-201ENST00000588063 596 ntBASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 AC005255.1-201ENST00000593748 216 ntBASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 AC020914.4-201ENST00000597690 277 ntBASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 AL592436.1-201ENST00000605135 558 ntBASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 AC010133.1-201ENST00000615809 842 ntBASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 AC025034.2-201ENST00000623264 286 ntBASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 AC034229.5-201ENST00000624258 185 ntBASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 U6.114-201ENST00000636407 96 ntBASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 AC099654.5-201ENST00000636479 350 ntBASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 AC103710.2-202ENST00000641454 2853 ntBASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
PTCHD3Q3KNS1 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC3.81□□□□□ -1.8
PTCHD3Q3KNS1 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
PTCHD3Q3KNS1 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
PTCHD3Q3KNS1 AL157700.1-201ENST00000561973 1432 ntBASIC3.81□□□□□ -1.8
PTCHD3Q3KNS1 SNORA7.2-201ENST00000364446 145 ntBASIC3.81□□□□□ -1.8
PTCHD3Q3KNS1 SNORD115-7-201ENST00000365306 82 ntBASIC3.81□□□□□ -1.8
PTCHD3Q3KNS1 SMIM11P1-201ENST00000369586 178 ntBASIC3.81□□□□□ -1.8
PTCHD3Q3KNS1 RNU6-1029P-201ENST00000384109 107 ntBASIC3.81□□□□□ -1.8
PTCHD3Q3KNS1 SNORA36C-201ENST00000384289 132 ntBASIC3.81□□□□□ -1.8
PTCHD3Q3KNS1 SOD2P1-201ENST00000396543 562 ntBASIC3.81□□□□□ -1.8
PTCHD3Q3KNS1 RNU6-193P-201ENST00000410977 107 ntBASIC3.81□□□□□ -1.8
PTCHD3Q3KNS1 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.81□□□□□ -1.8
PTCHD3Q3KNS1 AL513185.2-201ENST00000425543 193 ntBASIC3.81□□□□□ -1.8
PTCHD3Q3KNS1 CALM2P2-201ENST00000428512 440 ntBASIC3.81□□□□□ -1.8
PTCHD3Q3KNS1 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC3.81□□□□□ -1.8
PTCHD3Q3KNS1 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC3.81□□□□□ -1.8
PTCHD3Q3KNS1 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC3.81□□□□□ -1.8
PTCHD3Q3KNS1 AC020550.1-201ENST00000447385 163 ntBASIC3.81□□□□□ -1.8
PTCHD3Q3KNS1 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC3.81□□□□□ -1.8
PTCHD3Q3KNS1 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC3.81□□□□□ -1.8
PTCHD3Q3KNS1 AP000852.1-201ENST00000472460 573 ntBASIC3.81□□□□□ -1.8
PTCHD3Q3KNS1 AC069499.1-201ENST00000489433 509 ntBASIC3.81□□□□□ -1.8
PTCHD3Q3KNS1 RPL21P129-201ENST00000491732 478 ntBASIC3.81□□□□□ -1.8
PTCHD3Q3KNS1 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC3.81□□□□□ -1.8
PTCHD3Q3KNS1 MLLT10P2-201ENST00000506434 249 ntBASIC3.81□□□□□ -1.8
PTCHD3Q3KNS1 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
PTCHD3Q3KNS1 FTH1P9-201ENST00000513251 355 ntBASIC3.81□□□□□ -1.8
PTCHD3Q3KNS1 AC025465.4-201ENST00000513422 638 ntBASIC3.81□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 83.2 ms