Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC3.98□□□□□ -1.77
COL4A3Q01955 AL137792.2-201ENST00000443484 235 ntBASIC3.98□□□□□ -1.77
COL4A3Q01955 AL353691.1-201ENST00000451332 387 ntBASIC3.98□□□□□ -1.77
COL4A3Q01955 SNORD121B-201ENST00000458838 81 ntBASIC3.98□□□□□ -1.77
COL4A3Q01955 snoU13.7-201ENST00000459220 104 ntBASIC3.98□□□□□ -1.77
COL4A3Q01955 FTH1P9-201ENST00000513251 355 ntBASIC3.98□□□□□ -1.77
COL4A3Q01955 RNU7-51P-201ENST00000516560 62 ntBASIC3.98□□□□□ -1.77
COL4A3Q01955 RNU6-273P-201ENST00000516937 96 ntBASIC3.98□□□□□ -1.77
COL4A3Q01955 Y_RNA.720-201ENST00000517166 92 ntBASIC3.98□□□□□ -1.77
COL4A3Q01955 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC3.98□□□□□ -1.77
COL4A3Q01955 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC3.98□□□□□ -1.77
COL4A3Q01955 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC3.98□□□□□ -1.77
COL4A3Q01955 CYCSP30-201ENST00000546447 172 ntBASIC3.98□□□□□ -1.77
COL4A3Q01955 AC069240.1-201ENST00000548774 375 ntBASIC3.98□□□□□ -1.77
COL4A3Q01955 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC3.98□□□□□ -1.77
COL4A3Q01955 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC3.98□□□□□ -1.77
COL4A3Q01955 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC3.98□□□□□ -1.77
COL4A3Q01955 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC3.98□□□□□ -1.77
COL4A3Q01955 MIR3942-201ENST00000585264 109 ntBASIC3.98□□□□□ -1.77
COL4A3Q01955 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
COL4A3Q01955 AL137849.1-201ENST00000604767 169 ntBASIC3.98□□□□□ -1.77
COL4A3Q01955 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
COL4A3Q01955 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC3.98□□□□□ -1.77
COL4A3Q01955 AC011155.2-201ENST00000623202 216 ntBASIC3.98□□□□□ -1.77
COL4A3Q01955 AC244517.12-201ENST00000623581 663 ntBASIC3.98□□□□□ -1.77
COL4A3Q01955 AC005154.1-203ENST00000626245 451 ntTSL 5 BASIC3.98□□□□□ -1.77
COL4A3Q01955 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
COL4A3Q01955 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
COL4A3Q01955 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
COL4A3Q01955 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
COL4A3Q01955 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
COL4A3Q01955 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
COL4A3Q01955 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC3.98□□□□□ -1.77
COL4A3Q01955 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC3.97□□□□□ -1.77
COL4A3Q01955 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC3.97□□□□□ -1.77
COL4A3Q01955 AC066616.2-201ENST00000559334 1481 ntBASIC3.97□□□□□ -1.77
COL4A3Q01955 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
COL4A3Q01955 AL139276.1-201ENST00000311910 1001 ntBASIC3.97□□□□□ -1.77
COL4A3Q01955 RNU6-1309P-201ENST00000363305 108 ntBASIC3.97□□□□□ -1.77
COL4A3Q01955 SNORD113-7-201ENST00000363762 77 ntBASIC3.97□□□□□ -1.77
COL4A3Q01955 RNU6-1243P-201ENST00000364028 107 ntBASIC3.97□□□□□ -1.77
COL4A3Q01955 Y_RNA.378-201ENST00000365652 113 ntBASIC3.97□□□□□ -1.77
COL4A3Q01955 PARD3-204ENST00000374768 799 ntTSL 3 BASIC3.97□□□□□ -1.77
COL4A3Q01955 RNU6-308P-201ENST00000390957 107 ntBASIC3.97□□□□□ -1.77
COL4A3Q01955 SSXP10-201ENST00000402595 565 ntBASIC3.97□□□□□ -1.77
COL4A3Q01955 MIR548F5-201ENST00000408421 86 ntBASIC3.97□□□□□ -1.77
COL4A3Q01955 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC3.97□□□□□ -1.77
COL4A3Q01955 TRAPPC2P5-201ENST00000426293 308 ntBASIC3.97□□□□□ -1.77
COL4A3Q01955 RPL7L1P10-201ENST00000427790 463 ntBASIC3.97□□□□□ -1.77
COL4A3Q01955 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC3.97□□□□□ -1.77
COL4A3Q01955 FTH1P1-201ENST00000437933 532 ntBASIC3.97□□□□□ -1.77
COL4A3Q01955 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC3.97□□□□□ -1.77
COL4A3Q01955 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC3.97□□□□□ -1.77
COL4A3Q01955 MRPS31P2-201ENST00000451581 518 ntBASIC3.97□□□□□ -1.77
COL4A3Q01955 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC3.97□□□□□ -1.77
COL4A3Q01955 LEF1-218ENST00000512172 598 ntTSL 2 BASIC3.97□□□□□ -1.77
COL4A3Q01955 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.97□□□□□ -1.77
COL4A3Q01955 AP001804.3-201ENST00000525146 880 ntBASIC3.97□□□□□ -1.77
COL4A3Q01955 COX6CP5-201ENST00000527162 228 ntBASIC3.97□□□□□ -1.77
COL4A3Q01955 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC3.97□□□□□ -1.77
COL4A3Q01955 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC3.97□□□□□ -1.77
COL4A3Q01955 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
COL4A3Q01955 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
COL4A3Q01955 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC3.97□□□□□ -1.77
COL4A3Q01955 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC3.97□□□□□ -1.77
COL4A3Q01955 MIR4503-201ENST00000582187 83 ntBASIC3.97□□□□□ -1.77
COL4A3Q01955 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC3.97□□□□□ -1.77
COL4A3Q01955 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC3.97□□□□□ -1.77
COL4A3Q01955 7SK.7-201ENST00000603504 247 ntBASIC3.97□□□□□ -1.77
COL4A3Q01955 RNU1-30P-201ENST00000606575 163 ntBASIC3.97□□□□□ -1.77
COL4A3Q01955 AC092807.2-201ENST00000609367 243 ntBASIC3.97□□□□□ -1.77
COL4A3Q01955 Z82243.1-201ENST00000609432 473 ntBASIC3.97□□□□□ -1.77
COL4A3Q01955 AC091925.1-201ENST00000623204 462 ntBASIC3.97□□□□□ -1.77
COL4A3Q01955 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC3.97□□□□□ -1.77
COL4A3Q01955 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC3.97□□□□□ -1.77
COL4A3Q01955 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
COL4A3Q01955 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
COL4A3Q01955 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC3.97□□□□□ -1.77
COL4A3Q01955 DLD-204ENST00000437604 1859 ntTSL 2 BASIC3.97□□□□□ -1.77
COL4A3Q01955 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
COL4A3Q01955 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
COL4A3Q01955 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
COL4A3Q01955 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC3.97□□□□□ -1.77
COL4A3Q01955 MTND5P10-201ENST00000603719 1809 ntBASIC3.97□□□□□ -1.77
COL4A3Q01955 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
COL4A3Q01955 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC3.97□□□□□ -1.77
COL4A3Q01955 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
COL4A3Q01955 RNU1-108P-201ENST00000362556 161 ntBASIC3.97□□□□□ -1.77
COL4A3Q01955 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC3.97□□□□□ -1.77
COL4A3Q01955 RNU6-1293P-201ENST00000384077 107 ntBASIC3.97□□□□□ -1.77
COL4A3Q01955 RNU6-907P-201ENST00000390924 102 ntBASIC3.97□□□□□ -1.77
COL4A3Q01955 RNU2-15P-201ENST00000410692 191 ntBASIC3.97□□□□□ -1.77
COL4A3Q01955 RN7SKP247-201ENST00000411094 308 ntBASIC3.97□□□□□ -1.77
COL4A3Q01955 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC3.97□□□□□ -1.77
COL4A3Q01955 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC3.97□□□□□ -1.77
COL4A3Q01955 BTF3P15-201ENST00000455606 336 ntBASIC3.97□□□□□ -1.77
COL4A3Q01955 Y_RNA.653-201ENST00000459091 95 ntBASIC3.97□□□□□ -1.77
COL4A3Q01955 RNU7-180P-201ENST00000459240 63 ntBASIC3.97□□□□□ -1.77
COL4A3Q01955 RNU6-1208P-201ENST00000459588 107 ntBASIC3.97□□□□□ -1.77
COL4A3Q01955 AL133162.1-201ENST00000463228 453 ntBASIC3.97□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms