Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
HOXC9P31274 GABPAP-201ENST00000419271 1356 ntBASIC3.63□□□□□ -1.83
HOXC9P31274 TAB3P1-202ENST00000452645 1634 ntBASIC3.62□□□□□ -1.83
HOXC9P31274 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.62□□□□□ -1.83
HOXC9P31274 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC3.62□□□□□ -1.83
HOXC9P31274 RNU6-805P-201ENST00000365643 106 ntBASIC3.62□□□□□ -1.83
HOXC9P31274 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC3.62□□□□□ -1.83
HOXC9P31274 Y_RNA.553-201ENST00000384670 102 ntBASIC3.62□□□□□ -1.83
HOXC9P31274 RNA5SP293-201ENST00000410527 113 ntBASIC3.62□□□□□ -1.83
HOXC9P31274 AL137014.1-201ENST00000420490 1226 ntBASIC3.62□□□□□ -1.83
HOXC9P31274 MTCO2P34-201ENST00000421994 607 ntBASIC3.62□□□□□ -1.83
HOXC9P31274 SLC44A3-AS1-205ENST00000424505 612 ntBASIC3.62□□□□□ -1.83
HOXC9P31274 VN1R108P-201ENST00000431580 830 ntBASIC3.62□□□□□ -1.83
HOXC9P31274 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC3.62□□□□□ -1.83
HOXC9P31274 MTND1P28-201ENST00000435623 950 ntBASIC3.62□□□□□ -1.83
HOXC9P31274 MTCO1P19-201ENST00000443487 500 ntBASIC3.62□□□□□ -1.83
HOXC9P31274 USP9YP12-201ENST00000450481 570 ntBASIC3.62□□□□□ -1.83
HOXC9P31274 RN7SL75P-201ENST00000461926 281 ntBASIC3.62□□□□□ -1.83
HOXC9P31274 MTND4P2-201ENST00000507767 1203 ntBASIC3.62□□□□□ -1.83
HOXC9P31274 NDUFB4P9-201ENST00000511646 388 ntBASIC3.62□□□□□ -1.83
HOXC9P31274 SNORA31.20-201ENST00000517111 133 ntBASIC3.62□□□□□ -1.83
HOXC9P31274 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC3.62□□□□□ -1.83
HOXC9P31274 AP003497.1-201ENST00000528472 562 ntBASIC3.62□□□□□ -1.83
HOXC9P31274 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC3.62□□□□□ -1.83
HOXC9P31274 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC3.62□□□□□ -1.83
HOXC9P31274 AC040904.1-201ENST00000590850 223 ntBASIC3.62□□□□□ -1.83
HOXC9P31274 AC011451.2-201ENST00000604303 598 ntBASIC3.62□□□□□ -1.83
HOXC9P31274 AC104010.1-201ENST00000616889 150 ntBASIC3.62□□□□□ -1.83
HOXC9P31274 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC3.62□□□□□ -1.83
HOXC9P31274 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
HOXC9P31274 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC3.62□□□□□ -1.83
HOXC9P31274 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.62□□□□□ -1.83
HOXC9P31274 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
HOXC9P31274 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.61□□□□□ -1.83
HOXC9P31274 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.61□□□□□ -1.83
HOXC9P31274 FGF7P2-201ENST00000332473 296 ntBASIC3.61□□□□□ -1.83
HOXC9P31274 Y_RNA.201-201ENST00000364052 96 ntBASIC3.61□□□□□ -1.83
HOXC9P31274 U3.20-201ENST00000390909 217 ntBASIC3.61□□□□□ -1.83
HOXC9P31274 AL139039.1-201ENST00000401900 692 ntBASIC3.61□□□□□ -1.83
HOXC9P31274 AL138880.1-201ENST00000405824 642 ntBASIC3.61□□□□□ -1.83
HOXC9P31274 CCNG1P1-201ENST00000406783 885 ntBASIC3.61□□□□□ -1.83
HOXC9P31274 RAD23BP2-201ENST00000416003 1207 ntBASIC3.61□□□□□ -1.83
HOXC9P31274 AC009963.1-201ENST00000417265 157 ntBASIC3.61□□□□□ -1.83
HOXC9P31274 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC3.61□□□□□ -1.83
HOXC9P31274 AC079780.1-201ENST00000428259 207 ntBASIC3.61□□□□□ -1.83
HOXC9P31274 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC3.61□□□□□ -1.83
HOXC9P31274 OR4K11P-201ENST00000431829 904 ntBASIC3.61□□□□□ -1.83
HOXC9P31274 RPL21P112-201ENST00000434403 463 ntBASIC3.61□□□□□ -1.83
HOXC9P31274 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC3.61□□□□□ -1.83
HOXC9P31274 RPL7P28-201ENST00000437739 740 ntBASIC3.61□□□□□ -1.83
HOXC9P31274 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC3.61□□□□□ -1.83
HOXC9P31274 AC125238.1-201ENST00000448842 249 ntBASIC3.61□□□□□ -1.83
HOXC9P31274 AC234775.1-201ENST00000454247 670 ntBASIC3.61□□□□□ -1.83
HOXC9P31274 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC3.61□□□□□ -1.83
HOXC9P31274 FABP5P5-201ENST00000515537 406 ntBASIC3.61□□□□□ -1.83
HOXC9P31274 RNU6-1095P-201ENST00000516148 108 ntBASIC3.61□□□□□ -1.83
HOXC9P31274 RNU6-528P-201ENST00000516926 100 ntBASIC3.61□□□□□ -1.83
HOXC9P31274 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC3.61□□□□□ -1.83
HOXC9P31274 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC3.61□□□□□ -1.83
HOXC9P31274 AP000873.5-201ENST00000533906 236 ntBASIC3.61□□□□□ -1.83
HOXC9P31274 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC3.61□□□□□ -1.83
HOXC9P31274 AC135279.1-201ENST00000543493 504 ntBASIC3.61□□□□□ -1.83
HOXC9P31274 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC3.61□□□□□ -1.83
HOXC9P31274 ZNF519P3-201ENST00000557158 1032 ntBASIC3.61□□□□□ -1.83
HOXC9P31274 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC3.61□□□□□ -1.83
HOXC9P31274 AC087481.2-201ENST00000565492 330 ntBASIC3.61□□□□□ -1.83
HOXC9P31274 UBE2L4-201ENST00000587688 464 ntBASIC3.61□□□□□ -1.83
HOXC9P31274 AC079089.3-201ENST00000603094 673 ntBASIC3.61□□□□□ -1.83
HOXC9P31274 AC002550.2-201ENST00000621246 394 ntBASIC3.61□□□□□ -1.83
HOXC9P31274 AC010338.1-201ENST00000621823 717 ntBASIC3.61□□□□□ -1.83
HOXC9P31274 AL158801.5-201ENST00000623123 465 ntBASIC3.61□□□□□ -1.83
HOXC9P31274 AC079597.1-201ENST00000624306 508 ntBASIC3.61□□□□□ -1.83
HOXC9P31274 AC092608.2-201ENST00000624427 218 ntBASIC3.61□□□□□ -1.83
HOXC9P31274 AC048347.1-201ENST00000624621 427 ntBASIC3.61□□□□□ -1.83
HOXC9P31274 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC3.61□□□□□ -1.83
HOXC9P31274 MTCO1P9-201ENST00000505577 1534 ntBASIC3.6□□□□□ -1.83
HOXC9P31274 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC3.6□□□□□ -1.83
HOXC9P31274 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
HOXC9P31274 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
HOXC9P31274 MIR26A1-201ENST00000362205 77 ntBASIC3.6□□□□□ -1.83
HOXC9P31274 RNU6-359P-201ENST00000365466 108 ntBASIC3.6□□□□□ -1.83
HOXC9P31274 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC3.6□□□□□ -1.83
HOXC9P31274 RPS20P2-201ENST00000402520 389 ntBASIC3.6□□□□□ -1.83
HOXC9P31274 AMD1P2-201ENST00000412936 992 ntBASIC3.6□□□□□ -1.83
HOXC9P31274 MTCO3P12-201ENST00000416718 547 ntBASIC3.6□□□□□ -1.83
HOXC9P31274 SSXP9-201ENST00000417503 292 ntBASIC3.6□□□□□ -1.83
HOXC9P31274 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXC9P31274 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXC9P31274 UBE2V1P13-201ENST00000436983 439 ntBASIC3.6□□□□□ -1.83
HOXC9P31274 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC3.6□□□□□ -1.83
HOXC9P31274 USP9YP29-201ENST00000445112 563 ntBASIC3.6□□□□□ -1.83
HOXC9P31274 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXC9P31274 ST13P20-201ENST00000447996 1065 ntBASIC3.6□□□□□ -1.83
HOXC9P31274 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXC9P31274 AP1S2P1-201ENST00000457344 379 ntBASIC3.6□□□□□ -1.83
HOXC9P31274 RN7SL330P-201ENST00000469709 307 ntBASIC3.6□□□□□ -1.83
HOXC9P31274 AC010285.1-201ENST00000470580 392 ntBASIC3.6□□□□□ -1.83
HOXC9P31274 AC106872.2-201ENST00000494303 480 ntBASIC3.6□□□□□ -1.83
HOXC9P31274 AC068305.1-201ENST00000497406 726 ntBASIC3.6□□□□□ -1.83
HOXC9P31274 AC245166.1-201ENST00000521012 253 ntBASIC3.6□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms