Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC1.91□□□□□ -2.1
COL5A3P25940 RNU6-1180P-201ENST00000364935 107 ntBASIC1.91□□□□□ -2.1
COL5A3P25940 Y_RNA.354-201ENST00000365448 111 ntBASIC1.91□□□□□ -2.1
COL5A3P25940 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
COL5A3P25940 SNRPEP2-201ENST00000397592 279 ntBASIC1.91□□□□□ -2.1
COL5A3P25940 UBE2V1P9-201ENST00000414760 368 ntBASIC1.91□□□□□ -2.1
COL5A3P25940 MTCYBP45-201ENST00000435243 565 ntBASIC1.91□□□□□ -2.1
COL5A3P25940 HMGB1P45-201ENST00000435986 653 ntBASIC1.91□□□□□ -2.1
COL5A3P25940 AC097499.1-201ENST00000444277 208 ntBASIC1.91□□□□□ -2.1
COL5A3P25940 RPS29P29-201ENST00000456396 171 ntBASIC1.91□□□□□ -2.1
COL5A3P25940 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC1.91□□□□□ -2.1
COL5A3P25940 AC016550.1-201ENST00000505348 785 ntBASIC1.91□□□□□ -2.1
COL5A3P25940 AC008885.2-201ENST00000509506 930 ntBASIC1.91□□□□□ -2.1
COL5A3P25940 AC110792.2-201ENST00000510278 224 ntBASIC1.91□□□□□ -2.1
COL5A3P25940 RNU1-92P-201ENST00000517017 135 ntBASIC1.91□□□□□ -2.1
COL5A3P25940 LY96-202ENST00000518893 430 ntTSL 3 BASIC1.91□□□□□ -2.1
COL5A3P25940 AP003355.1-201ENST00000518956 587 ntBASIC1.91□□□□□ -2.1
COL5A3P25940 AC083923.1-201ENST00000523708 376 ntBASIC1.91□□□□□ -2.1
COL5A3P25940 CASP1-212ENST00000531166 300 ntTSL 5 BASIC1.91□□□□□ -2.1
COL5A3P25940 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.91□□□□□ -2.1
COL5A3P25940 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC1.91□□□□□ -2.1
COL5A3P25940 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
COL5A3P25940 AC012493.3-201ENST00000604494 112 ntBASIC1.91□□□□□ -2.1
COL5A3P25940 AC242426.3-203ENST00000606757 712 ntTSL 3 BASIC1.91□□□□□ -2.1
COL5A3P25940 AC078880.5-201ENST00000617845 421 ntBASIC1.91□□□□□ -2.1
COL5A3P25940 AL353770.2-201ENST00000620024 78 ntBASIC1.91□□□□□ -2.1
COL5A3P25940 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC1.91□□□□□ -2.1
COL5A3P25940 AP002907.1-201ENST00000606361 1430 ntBASIC1.9□□□□□ -2.1
COL5A3P25940 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC1.9□□□□□ -2.1
COL5A3P25940 AC006026.1-201ENST00000444025 1803 ntBASIC1.9□□□□□ -2.11
COL5A3P25940 MIR96-201ENST00000362288 78 ntBASIC1.9□□□□□ -2.11
COL5A3P25940 RNU6-792P-201ENST00000363490 107 ntBASIC1.9□□□□□ -2.11
COL5A3P25940 MIR607-201ENST00000385241 96 ntBASIC1.9□□□□□ -2.11
COL5A3P25940 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC1.9□□□□□ -2.11
COL5A3P25940 STAT4-203ENST00000409995 709 ntTSL 5 BASIC1.9□□□□□ -2.11
COL5A3P25940 AC244098.2-201ENST00000422068 99 ntBASIC1.9□□□□□ -2.11
COL5A3P25940 AC246680.2-201ENST00000422106 389 ntBASIC1.9□□□□□ -2.11
COL5A3P25940 OR51AB1P-201ENST00000429046 620 ntBASIC1.9□□□□□ -2.11
COL5A3P25940 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC1.9□□□□□ -2.11
COL5A3P25940 AC011891.1-201ENST00000437088 432 ntTSL 3 BASIC1.9□□□□□ -2.11
COL5A3P25940 AC099063.1-201ENST00000437128 324 ntTSL 5 BASIC1.9□□□□□ -2.11
COL5A3P25940 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC1.9□□□□□ -2.11
COL5A3P25940 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC1.9□□□□□ -2.11
COL5A3P25940 AL158053.1-201ENST00000441503 453 ntBASIC1.9□□□□□ -2.11
COL5A3P25940 snoU109.3-201ENST00000459477 145 ntBASIC1.9□□□□□ -2.11
COL5A3P25940 RPL32P14-201ENST00000463196 378 ntBASIC1.9□□□□□ -2.11
COL5A3P25940 AC092902.1-201ENST00000486999 259 ntBASIC1.9□□□□□ -2.11
COL5A3P25940 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC1.9□□□□□ -2.11
COL5A3P25940 AC112518.2-201ENST00000508565 425 ntBASIC1.9□□□□□ -2.11
COL5A3P25940 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC1.9□□□□□ -2.11
COL5A3P25940 RNU5A-7P-201ENST00000515979 116 ntBASIC1.9□□□□□ -2.11
COL5A3P25940 RNU1-61P-201ENST00000516107 151 ntBASIC1.9□□□□□ -2.11
COL5A3P25940 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC1.9□□□□□ -2.11
COL5A3P25940 SNRPGP15-201ENST00000600149 222 ntBASIC1.9□□□□□ -2.11
COL5A3P25940 AL109653.1-201ENST00000603091 248 ntBASIC1.9□□□□□ -2.11
COL5A3P25940 AC113194.1-201ENST00000606037 500 ntBASIC1.9□□□□□ -2.11
COL5A3P25940 AC006065.5-201ENST00000623427 349 ntBASIC1.9□□□□□ -2.11
COL5A3P25940 AL359740.1-201ENST00000624340 592 ntBASIC1.9□□□□□ -2.11
COL5A3P25940 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC1.9□□□□□ -2.11
COL5A3P25940 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.9□□□□□ -2.11
COL5A3P25940 MIR203B-201ENST00000636080 86 ntBASIC1.9□□□□□ -2.11
COL5A3P25940 AC106858.1-201ENST00000637497 429 ntBASIC1.9□□□□□ -2.11
COL5A3P25940 MTCO1P18-201ENST00000455518 1419 ntBASIC1.9□□□□□ -2.11
COL5A3P25940 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
COL5A3P25940 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
COL5A3P25940 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC1.9□□□□□ -2.11
COL5A3P25940 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC1.9□□□□□ -2.11
COL5A3P25940 MTND5P11-201ENST00000511037 1812 ntBASIC1.9□□□□□ -2.11
COL5A3P25940 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
COL5A3P25940 RNU6-354P-201ENST00000383862 107 ntBASIC1.89□□□□□ -2.11
COL5A3P25940 RNU6-610P-201ENST00000384264 107 ntBASIC1.89□□□□□ -2.11
COL5A3P25940 MIR1250-201ENST00000408098 113 ntBASIC1.89□□□□□ -2.11
COL5A3P25940 RNU2-25P-201ENST00000411041 191 ntBASIC1.89□□□□□ -2.11
COL5A3P25940 AC004022.2-201ENST00000413824 193 ntBASIC1.89□□□□□ -2.11
COL5A3P25940 AL159990.1-201ENST00000415119 337 ntTSL 3 BASIC1.89□□□□□ -2.11
COL5A3P25940 ZNF736P7Y-201ENST00000425158 820 ntBASIC1.89□□□□□ -2.11
COL5A3P25940 AC006548.1-201ENST00000427470 102 ntBASIC1.89□□□□□ -2.11
COL5A3P25940 TRIM60P8Y-201ENST00000436338 762 ntBASIC1.89□□□□□ -2.11
COL5A3P25940 AL159990.2-201ENST00000436491 337 ntTSL 3 BASIC1.89□□□□□ -2.11
COL5A3P25940 AC068135.1-201ENST00000446164 246 ntBASIC1.89□□□□□ -2.11
COL5A3P25940 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC1.89□□□□□ -2.11
COL5A3P25940 AC007395.1-201ENST00000451333 677 ntBASIC1.89□□□□□ -2.11
COL5A3P25940 RPL21P134-201ENST00000453468 483 ntBASIC1.89□□□□□ -2.11
COL5A3P25940 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
COL5A3P25940 RN7SL274P-201ENST00000492268 272 ntBASIC1.89□□□□□ -2.11
COL5A3P25940 AC008427.1-201ENST00000503102 655 ntBASIC1.89□□□□□ -2.11
COL5A3P25940 TRAV28-201ENST00000557548 323 ntBASIC1.89□□□□□ -2.11
COL5A3P25940 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC1.89□□□□□ -2.11
COL5A3P25940 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC1.89□□□□□ -2.11
COL5A3P25940 MIR3660-201ENST00000584845 100 ntBASIC1.89□□□□□ -2.11
COL5A3P25940 AC022709.1-201ENST00000615967 87 ntBASIC1.89□□□□□ -2.11
COL5A3P25940 AL158801.5-201ENST00000623123 465 ntBASIC1.89□□□□□ -2.11
COL5A3P25940 CR381572.1-201ENST00000625098 102 ntBASIC1.89□□□□□ -2.11
COL5A3P25940 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC1.89□□□□□ -2.11
COL5A3P25940 MTND5P3-201ENST00000438536 1800 ntBASIC1.89□□□□□ -2.11
COL5A3P25940 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
COL5A3P25940 SNORD56.4-201ENST00000363883 71 ntBASIC1.88□□□□□ -2.11
COL5A3P25940 RNU6-609P-201ENST00000365459 107 ntBASIC1.88□□□□□ -2.11
COL5A3P25940 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC1.88□□□□□ -2.11
COL5A3P25940 MIR525-201ENST00000384978 85 ntBASIC1.88□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 120.4 ms